Contig 014084:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF039P02Sequence654014084 (4)emb|CDP02459.1|1e-89unnamed protein product [Coffea canephora]862014084 (4)emb|CDP02459.1|3e-118unnamed protein product [Coffea canephora]
JMSF042N20Sequence827014084 (4)emb|CDP02459.1|3e-118unnamed protein product [Coffea canephora]718014084 (4)emb|CDP02459.1|1e-72unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF039P02-               GGGAAGAGAATAAAAAATCTGTGTTGTTTCTTGACTTCGACGCTAAATCTAACTCG
JMSF042N20-                                     GTTGTTTCTTGACTTCGACGCTAAATCTAACTCG
rJMSF039P02+                                                                     G
                      ____________________________________________________________
consensus                 GGGAAGAGAATAAAAAATCTGTGTTGTTTCTTGACTTCGACGCTAAATCTAACTCG
 
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JMSF039P02-           GAGATAGGATTTATCAAATCTCGGCATCGTTGATCGTCTTCATTCTGCACATAATCACTA
JMSF042N20-           GAGATAGGATTTATCAAATCTCGGCATCGTTGATCGTCTTCATTCTGCACATAATCACTA
rJMSF039P02+          GAGATAGGATTTATCAAATCTCGGCATCGTTGATCGTCTTCATTCTGCACATAATCACTA
                      ____________________________________________________________
consensus             GAGATAGGATTTATCAAATCTCGGCATCGTTGATCGTCTTCATTCTGCACATAATCACTA
 
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JMSF039P02-           TGAATTGCGTCGATTTTCGGCTCAAAGAACTGGACGTGGAGCACTTTGAGATACGAGAGG
JMSF042N20-           TGAATTGCGTCGATTTTCGGCTCAAAGAACTGGACGTGGAGCACTTTGAGATACGAGAGG
rJMSF039P02+          TGAATTGCGTCGATTTTCGGCTCAAAGAACTGGACGTGGAGCACTTTGAGATACGAGAGG
                      ____________________________________________________________
consensus             TGAATTGCGTCGATTTTCGGCTCAAAGAACTGGACGTGGAGCACTTTGAGATACGAGAGG
 
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JMSF039P02-           TTCTGCGATGCATTTTGCATACAGTTTTATTCCACAGAGCATTAGGCCTGGTGCGGCCAA
JMSF042N20-           TTCTGCGATGCATTTTGCATACAGTTTTATTCCACAGAGCATTAGGCCTGGTGCGGCCAA
rJMSF039P02+          TTCTGCGATGCATTTTGCATACAGTTTTATTCCACAGAGCATTAGGCCTGGTGCGGCCAA
                      ____________________________________________________________
consensus             TTCTGCGATGCATTTTGCATACAGTTTTATTCCACAGAGCATTAGGCCTGGTGCGGCCAA
 
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JMSF039P02-           AGGACATTGATTTGGAGCTTTTTGATATTACATATGTTCAATGTGGTGATGTTGAGGTCG
JMSF042N20-           AGGACATTGATTTGGAGCTTTTTGATATTACATATGTTCAATGTGGTGATGTTGAGGTCG
rJMSF039P02+          AGGACATTGATTTGGAGCTTTTTGATATTACATATGTTCAATGTGGTGATGTTGAGGTCG
                      ____________________________________________________________
consensus             AGGACATTGATTTGGAGCTTTTTGATATTACATATGTTCAATGTGGTGATGTTGAGGTCG
 
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JMSF039P02-           AGAAGAAAATAGATGAGAAGATTGAGCACTTCATTGAAAGGGTGGAGAAGCACCCCAACA
JMSF042N20-           AGAAGAAAATAGATGAGAAGATTGAGCACTTCATTGAAAGGGTGGAGAAGCACCCCAACA
rJMSF039P02+          AGAAGAAAATAGATGAGAAGATTGAGCACTTCATTGAAAGGGTGGAGAAGCACCCCAACA
                      ____________________________________________________________
consensus             AGAAGAAAATAGATGAGAAGATTGAGCACTTCATTGAAAGGGTGGAGAAGCACCCCAACA
 
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JMSF039P02-           AGAAGAATGAGATCTGTTTATCCTTCTATGAAGTCAAGAACAAGCAGGCAACGTGGTTCT
JMSF042N20-           AGAAGAATGAGATCTGTTTATCCTTCTATGAAGTCAAGAACAAGCAGGCAACGTGGTTCT
rJMSF039P02+          AGAAGAATGAGATCTGTTTATCCTTCTATGAAGTCAAGAACAAGCAGGCAACGTGGTTCT
rJMSF042N20+            AAGAATGAGATCTGTTTATCCTTCTATGAAGTCAAGAACAAGCAGGCAACGTGGTTCT
                      ____________________________________________________________
consensus             AGAAGAATGAGATCTGTTTATCCTTCTATGAAGTCAAGAACAAGCAGGCAACGTGGTTCT
 
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JMSF039P02-           CAAACAAAGTTGAACGTCTCTACTGGGAACAGTGGTACATAAATTTGAATGTTGCTCAGC
JMSF042N20-           CAAACAAAGTTGAACGTCTCTACTGGGAACAGTGGTACATAAATTTGAATGTTGCTCAGC
rJMSF039P02+          CAAACAAAGTTGAACGTCTCTACTGGGAACAGTGGTACATAAATTTGAATGTTGCTCAGC
rJMSF042N20+          CAAACAAAGTTGAACGTCTCTACTGGGAACAGTGGTACATAAATTTGAATGTTGCTCAGC
                      ____________________________________________________________
consensus             CAAACAAAGTTGAACGTCTCTACTGGGAACAGTGGTACATAAATTTGAATGTTGCTCAGC
 
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JMSF039P02-           ACCCAAAAGCACATTCTAGCAAATCTCATCACTCCAAAGCAGTATTTGATCCTGGAGAGA
JMSF042N20-           ACCCAAAAGCACATTCTAGCAAATCTCATCACTCCAAAGCAGTATTTGATCCTGGAGAGA
rJMSF039P02+          ACCCAAAAGCACATTCTAGCAAATCTCATCACTCCAAAGCAGTATTTGATCCTGGAGAGA
rJMSF042N20+          ACCCAAAAGCACATTCTAGCAAATCTCATCACTCCAAAGCAGTATTTGATCCTGGAGAGA
                      ____________________________________________________________
consensus             ACCCAAAAGCACATTCTAGCAAATCTCATCACTCCAAAGCAGTATTTGATCCTGGAGAGA
 
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JMSF039P02-           GTACATCTGAGGAGAGGAATGCTCGGCGAGCAGCACTAGAATTGTCTCTTCGTGAAGTTC
JMSF042N20-           GTACATCTGAGGAGAGGAATGCTCGGCGAGCAGCACTAGAATTGTCTCTTCGTGAAGTTC
rJMSF039P02+          GTACATCTGAGGAGAGGAATGCTCGGCGAGCAGCACTAGAATTGTCTCTTCGTGAAGTTC
rJMSF042N20+          GTACATCTGAGGAGAGGAATGCTCGGCGAGCAGCACTAGAATTGTCTCTTCGTGAAGTTC
                      ____________________________________________________________
consensus             GTACATCTGAGGAGAGGAATGCTCGGCGAGCAGCACTAGAATTGTCTCTTCGTGAAGTTC
 
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JMSF039P02-           TGTTTCAGATAATCAAATTTGTAAATGAAAAAAAGGACCATGTTCCCTCGGTACCAAA  
JMSF042N20-           TGTTTCAGATAATCAAATTTGTAAATGAAAAAAAGGACCATGTTCCCTCGGTACCAAATC
rJMSF039P02+          TGTTTCAGATAATCAAATTTGTAAATGAAAAAAAGGACCATGTTCCCTCGGTACCAAATC
rJMSF042N20+          TGTTTCAGATAATCAAATTTGTAAATGAAAAAAAGGACCATGTTCCCTCGGTACCAAATC
                      ____________________________________________________________
consensus             TGTTTCAGATAATCAAATTTGTAAATGAAAAAAAGGACCATGTTCCCTCGGTACCAAATC
 
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JMSF042N20-           TTGAGGGTGTCTCATTTCCCTATGAGATCACTATCTCAAGTTCATCAGATTCCGCATTTG
rJMSF039P02+          TTGAGGGTGTCTCATTTCCCTATGAGATCACTATCTCAAGTTCATCAGATTCCGCATTTG
rJMSF042N20+          TTGAGGGTGTCTCATTTCCCTATGAGATCACTATCTCAAGTTCATCAGATTCCGCATTTG
                      ____________________________________________________________
consensus             TTGAGGGTGTCTCATTTCCCTATGAGATCACTATCTCAAGTTCATCAGATTCCGCATTTG
 
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JMSF042N20-           GGATGGAAATGTTCAAGAGGATGCTCCAGACTGGACATCCAAGCATTCTCAGTTGAGAAG
rJMSF039P02+          GGATGGAAATGTTCAAGAGGATGCTCCAGACTGGACATCCAAGCATTCTCAGTTGAGAAG
rJMSF042N20+          GGATGGAAATGTTCAAGAGGATGCTCCAGACTGGACATCCAAGCATTCTCAGTTGAGAAG
                      ____________________________________________________________
consensus             GGATGGAAATGTTCAAGAGGATGCTCCAGACTGGACATCCAAGCATTCTCAGTTGAGAAG
 
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JMSF042N20-           CTATGCCCATTATCTCCTTGGTTGATAAAGGTAAAATTGTTGCTTAATCTACTGATCCGG
rJMSF039P02+          CTATGCCCATTATCTCCTTGGTTGATAAAGGTAAAATTGTTGCTTAATCTACTGATCCGG
rJMSF042N20+          CTATGCCCATTATCTCCTTGGTTGATAAAGGTAAAATTGTTGCTTAATCTACTGATCCGG
                      ____________________________________________________________
consensus             CTATGCCCATTATCTCCTTGGTTGATAAAGGTAAAATTGTTGCTTAATCTACTGATCCGG
 
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JMSF042N20-           AACATGAACAGT                                                
rJMSF039P02+          AACATGAACAGTTTGGGCTGAAGTTGGTGAGGTGGCTTTCTGTGGTTGAACAGTAGACAG
rJMSF042N20+          AACATGAACAGTTTGGGCTGAAGTTGGTGAGGTGGCTTTCTGTGGTTGAACAGTAGACAG
                      ____________________________________________________________
consensus             AACATGAACAGTTTGGGCTGAAGTTGGTGAGGTGGCTTTCTGTGGTTGAACAGTAGACAG
 
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rJMSF039P02+          TAAACATTAGTAAATATTTAT                                       
rJMSF042N20+          TAAACATTAGTAAATATTTATTGTACATACAGTGTGTATTTATCTACCAATGGAGATCTC
                      ____________________________________________________________
consensus             TAAACATTAGTAAATATTTATTGTACATACAGTGTGTATTTATCTACCAATGGAGATCTC
 
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rJMSF042N20+          TTTTTCATGCTTCTCGTTTCTATCTACCACTAAACTATATGATGAGGGTACCCCTTAATA
                      ____________________________________________________________
consensus             TTTTTCATGCTTCTCGTTTCTATCTACCACTAAACTATATGATGAGGGTACCCCTTAATA
 
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rJMSF042N20+          TTGAGGGAGCATTTTTCACTTGAANCCATGGGCTTAATAGATGCCTTTAGGGTTCATCTA
                      ____________________________________________________________
consensus             TTGAGGGAGCATTTTTCACTTGAANCCATGGGCTTAATAGATGCCTTTAGGGTTCATCTA