Contig 014083:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF040D08+                                                                  GAGG
                      ____________________________________________________________
consensus                                                                     GAGG
 
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rJMFF040D08+          CCAGTAAAAAGGAACCATTGTAATCAAGTGCAGTCATTTCTAACAGCAAATTTTGCCAGC
rJMSF042M15+                                                         AAATTTTGCCAGC
                      ____________________________________________________________
consensus             CCAGTAAAAAGGAACCATTGTAATCAAGTGCAGTCATTTCTAACAGCAAATTTTGCCAGC
 
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rJMFF040D08+          ACAACAAATACAATCATTAGTAATATGATGCAAATAGTAATACACCCTACCCAGG-AAAG
rJMFF023H19+                            AGTAATATGATGCAAATAGTAATACNCCCTACCCAGGNAAAG
rJMSF042M15+          ACAACAAATACAATCATTAGTAATATGATGCAANTAGTAATACACCCTNCCCAGG-AAAG
                      ____________________________________________________________
consensus             ACAACAAATACAATCATTAGTAATATGATGCAAATAGTAATACACCCTACCCAGG-AAAG
 
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rJMFF040D08+          TCAAACAGGGGAGTGAAAAAGTGTGCAGTATTTTTGGGGGGTTTGTAATAACTACTAGAT
rJMFF023H19+          TCAAACAGGGGAGTGAAAAAGTGTGCAGTATTTTTGGGGGGTTTGTAATAACTACTAGAT
rJMSF042M15+          TCAAACAGGGGAGTGAAAAAGTGTGCAGTATTTTTGGGGGGTTTGTAATAACTACTAGAT
                      ____________________________________________________________
consensus             TCAAACAGGGGAGTGAAAAAGTGTGCAGTATTTTTGGGGGGTTTGTAATAACTACTAGAT
 
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rJMFF040D08+          ATACAAGAATAGATTTTAGCCATATGTTTTATTCTCCCAATGAAGAGCCAAAAACTGGCC
rJMFF023H19+          ATACAAGAATAGATTTTAGCCATATGTTTTATTCTCCCAATGAAGAGCCAAAAACTGGCC
rJMSF042M15+          ATACAAGAATAGATTTTAGCCATATGTTTTATTCTCCCAATGAAGAGCCAAAAACTGGCC
                      ____________________________________________________________
consensus             ATACAAGAATAGATTTTAGCCATATGTTTTATTCTCCCAATGAAGAGCCAAAAACTGGCC
 
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rJMFF040D08+          CTGATTGGGAAGACAGTACAGTTTAGAATATAAATTCCGGTGGTAAAGCTAAAGGTTGCA
rJMFF023H19+          CTGATTGGGAAGACAGTACAGTTTAGAATATAAATTCCGGTGGTAAAGCTAAATGTTGCA
rJMSF042M15+          CTGATTGGGAAGACAGTACAGTTTAGAATATAAATTCCGGTGGTAAAGCTAAAGGTTGCA
                      ____________________________________________________________
consensus             CTGATTGGGAAGACAGTACAGTTTAGAATATAAATTCCGGTGGTAAAGCTAAAGGTTGCA
 
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rJMFF040D08+          GCAAGTGGGGCGGTGGATAAGTTGGAGAATGAGAATGGTAAACAGCTATATAGCAAAGGT
rJMFF023H19+          GCAAGTGGGGCGGTGGATAAGTTGGAGAATGAGAATGGTAAACAGCTATATAGCAAAGGT
rJMSF042M15+          GCAAGTGGGGCGGTGGATAAGTTGGAGAATGAGAATGGTAAACAGCTATATAGCAAAGGT
                      ____________________________________________________________
consensus             GCAAGTGGGGCGGTGGATAAGTTGGAGAATGAGAATGGTAAACAGCTATATAGCAAAGGT
 
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rJMFF040D08+          TTGACCTGCACTGCTCCATAATGAAATAGACAGCAACGATAGAGGCAGACACTGAGGCAT
rJMFF023H19+          TTGACCTGCACTGCTCCATAATGAAATAGACAGCAACGATAGAGGCAGACACTGAGGCAT
rJMSF042M15+          TTGACCTGCACTGCTCCATAATGAAATAGACAGCAACGATAGAGGCAGACACTGAGGCAT
                      ____________________________________________________________
consensus             TTGACCTGCACTGCTCCATAATGAAATAGACAGCAACGATAGAGGCAGACACTGAGGCAT
 
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rJMFF040D08+          GTATAGTGAAAAGACGATCGAATACGGAGTGTTTNGAAAGGGGAAGGATGATAAAGACAG
rJMFF023H19+          GTATAGTGAAAAGACGATCGAATACGGAGTGTTTTGAAAGGGGAAGGATGATAAAGACAG
rJMSF042M15+          GTATAGTGAAAAGACGATCGAATACGGAGTGTTTTGAAAGGGGAAGGATGATAAAGACAG
                      ____________________________________________________________
consensus             GTATAGTGAAAAGACGATCGAATACGGAGTGTTTTGAAAGGGGAAGGATGATAAAGACAG
 
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rJMFF040D08+          GTAGATCTAGTGGGCTAAAATGCAGCAGCGGGACGGCATTTTATGGTAGAGATGAGTTAG
rJMFF023H19+          GTAGATCTAGTGGGCTAAAATGCAGCAGCGGGACGGCATTTTATGGTAGAGATGAGTTAG
rJMSF042M15+          GTAGATCTAGTGGGCTAAAATGCAGCAGCGGGACGGCATTTTATGGTAGAGATGAGTTAG
                      ____________________________________________________________
consensus             GTAGATCTAGTGGGCTAAAATGCAGCAGCGGGACGGCATTTTATGGTAGAGATGAGTTAG
 
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rJMFF040D08+          TGGGGATCGGAATGGGATTCATCTAGAAGACCTACGGATGATAAGTCCACCTTATATTTG
rJMFF023H19+          TGGGGATCGGAATGGGATTCATCTAGAAGACCTACGGATGATAAGTCCACCTTATATTTG
rJMSF042M15+          TGGGGATCGGAATGGGATTCATCTAGAAGACCTNCGGATGATAAGTCCACCTNATATTTG
                      ____________________________________________________________
consensus             TGGGGATCGGAATGGGATTCATCTAGAAGACCTACGGATGATAAGTCCACCTTATATTTG
 
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rJMFF040D08+          TCTTTTTCTTTCCGGAAATAATATTAGTTTATATAATTTACTCATAGCCCCAATGGGAAG
rJMFF023H19+          TCTTTTTCTTTCCGGAAATAATATTAGTTTATATAATTTACTCATAGCCCCAATGGGAAG
rJMSF042M15+          TCTTTTTCTTTCCGGAAATAATATTAGTTTATATAATTTACTCATAGCCCCAATGGGAAG
                      ____________________________________________________________
consensus             TCTTTTTCTTTCCGGAAATAATATTAGTTTATATAATTTACTCATAGCCCCAATGGGAAG
 
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rJMFF040D08+          TACATGTAACTGATACTGATGGGAAGCT                                
rJMFF023H19+          TACATGTAACTGATACTGATGGGAAGCTTATCTATCTCCTTTACTACTATGTCATGCCT 
rJMSF042M15+          TACATNTAACTGATACTGATGGGAAGCTTATCTATCTCCTNTACTACTATGTCATGCCTA
                      ____________________________________________________________
consensus             TACATGTAACTGATACTGATGGGAAGCTTATCTATCTCCTTTACTACTATGTCATGCCTA