Contig 014081:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018I15Sequence534003145 (2)ref|XP_011084194.1|2e-35PREDICTED: transcription factor bHLH78-like [Sesamum indicum]652014081 (3)emb|CDP10270.1|8e-22unnamed protein product [Coffea canephora]
JMFF025N10Sequence502003145 (2)ref|XP_011084194.1|1e-27PREDICTED: transcription factor bHLH78-like [Sesamum indicum]629014081 (3)emb|CDP10270.1|9e-21unnamed protein product [Coffea canephora]
JMSF042J10Sequence169021156616014081 (3)emb|CDP10270.1|6e-19unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMFF025N10+                                                                    TC
rJMFF018I15+                                                           GGNGATGGCTC
                      ____________________________________________________________
consensus                                                              GGNGATGGCTC
 
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rJMFF025N10+          AGAACATGTTNTCATCAGAGGCCTCAGGATCNCCAATCCCATACTNTTTTCAATTTNTGC
rJMFF018I15+          AGAACATGTTTTCATCAGAGGCCTCAGGATCACCAATCCCATACTNTTTTCAATTTCTGC
rJMSF042J10+                                                        TTTTCAATCTCTGC
                      ____________________________________________________________
consensus             AGAACATGTTTTCATCAGAGGCCTCAGGATCACCAATCCCATACTNTTTTCAATTTCTGC
 
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rJMFF025N10+          CATCCATTTCACTCCTTCCTAAAGGATCAGAAGTCCCTTTTCCCATTAACAGCAGTAGAA
rJMFF018I15+          CATCCATTTCACTCCTTCCTAAAGGATCAGAAGTCCCTTTTCCCATTAACAGCAGTAGAA
rJMSF042J10+          CATCCATTTCACTCCTTCCTAAAGGATCAGAAGTCCCTTTTCCCATTAACAGCAGTAGAA
                      ____________________________________________________________
consensus             CATCCATTTCACTCCTTCCTAAAGGATCAGAAGTCCCTTTTCCCATTAACAGCAGTAGAA
 
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rJMFF025N10+          ATNTTGGCCTGGCATTGCCTCCTATGGACACTTTTNTTGAGCCTGCTTTTCAGGTACCAG
rJMFF018I15+          ATNTTGGCCTGGCATTGCCTCCTATGGACACTTTTNTTGAGCCTGCTTTTCAGGTACCAG
rJMSF042J10+          ATCTTGGCCTGGCATTGCCTCCTATGGACACTTTTCTTGAGCCTGCTTNTCAGGTACCNG
                      ____________________________________________________________
consensus             ATCTTGGCCTGGCATTGCCTCCTATGGACACTTTTCTTGAGCCTGCTTTTCAGGTACCAG
 
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rJMFF025N10+          GTTTNTTTGAGGATGATNTCAATACTGTTGTCCAGATGGGTTTTGGCCAAAACCAGTCAC
rJMFF018I15+          GTTTNTTTGAGGATGATNTCAATACTGTTGTCCAGATGGGTTTTGGCCAAAACCAGTCAC
rJMSF042J10+          GTTTCTTTGAGGATGATCTCAATACTGTTGTCCAGATGGGTTTTGGCCAAAACCNGTCNC
                      ____________________________________________________________
consensus             GTTTCTTTGAGGATGATCTCAATACTGTTGTCCAGATGGGTTTTGGCCAAAACCAGTCAC
 
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rJMFF025N10+          AAAATTTTCATGGAACTGTGGGTGCTTTTGAAATGAAAGTTGAGCTATGATCNCNCAACA
rJMFF018I15+          AAAATTTTCATGGAACTGTGGGTGCTTTTGAAATGAAAGTTGAGCTATGATCNCACAACA
rJMSF042J10+          AAAATTTTCATGGAACTGTGGGTGCTTNTGAAATGAAAGTTGAGCTATGATCNCNCAACN
                      ____________________________________________________________
consensus             AAAATTTTCATGGAACTGTGGGTGCTTTTGAAATGAAAGTTGAGCTATGATCNCACAACA
 
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rJMFF025N10+          GTCAAAAACTGTTCCNCCATTCATTTTAAGGCCCCAATTGGGAGAGGCTTTTGTATATGT
rJMFF018I15+          GTCAAAAACTGTTCCNCCATTCATTTTAAGGCCCCAATTGGGAGAGGCTTTTGTATATGT
rJMSF042J10+          GTCAAAAACTGTTCCNCCNTTCATTTTAAGGCCCCAATTGGGAGAGGCTTTTGTATATGT
                      ____________________________________________________________
consensus             GTCAAAAACTGTTCCNCCATTCATTTTAAGGCCCCAATTGGGAGAGGCTTTTGTATATGT
 
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rJMFF025N10+          ACAGGAGACTTGGCCGTTCAACAGAGAGGATCAGAGGAATTNTGGATTCAAGAAAAAGAG
rJMFF018I15+          ACAGGAGACTTGGCCGTTCAACAGAGAGGATCAGAGGAATTNTGGATTCAAGAAAAAGAG
rJMSF042J10+          ACNGGNGACTTGGCCGTTCAACAGAGAGGATCAGAGGAATTNTGGATTCAAGAAAAAGAG
                      ____________________________________________________________
consensus             ACAGGAGACTTGGCCGTTCAACAGAGAGGATCAGAGGAATTNTGGATTCAAGAAAAAGAG
 
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rJMFF025N10+          AATTTTTCCCCCATCCATTNTTGTTCCATAATTAATTTAGCCATTACTCAGNTGATTATT
rJMFF018I15+          AATTTTTCCCCCATCCATTNTTGTTCCATAATTAATTTAGCCATTACTCAGNTGATTATT
rJMSF042J10+          AATTTTTCCCCCATCCNTTCTTGTTCCATAATTAATTTAGCCNTTACTCAGCTGATTATT
                      ____________________________________________________________
consensus             AATTTTTCCCCCATCCATTCTTGTTCCATAATTAATTTAGCCATTACTCAGCTGATTATT
 
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rJMFF025N10+          ATGATTTTTTGCTTTTTTTTTTTACATTGAAAAAATTGGAGAAGGATTAGAGATCATATT
rJMFF018I15+          ATGATTTTTTGCTTTTTTTTTTTACATTGAAAAAATTGGAGAAGGATTAGAGATCATATT
rJMSF042J10+          ATGATTTTTTGCTTTTTTTTTTTACATTGAAAAAATTGGAGGAGGATTAGAGATCATATT
                      ____________________________________________________________
consensus             ATGATTTTTTGCTTTTTTTTTTTACATTGAAAAAATTGGAGAAGGATTAGAGATCATATT
 
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rJMFF025N10+          GTTGTGAGAACTCCAGAAATTTCACATGTAACATATTGTAGCTGATGATAAGATGTGTGT
rJMFF018I15+          GTTGTGAGAACTCCAGAAATTTCACATGTAACATATTGTAGCTGATGATAAGATGTGTGT
rJMSF042J10+          GTTGTGAGAACTCCAGAAATTTCACATGTAACATATTGTAGCTGATGATAAGATGTGTGT
                      ____________________________________________________________
consensus             GTTGTGAGAACTCCAGAAATTTCACATGTAACATATTGTAGCTGATGATAAGATGTGTGT
 
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rJMFF025N10+          CCAAGGGTTGGTTGANGAGAGGGAAGA                                 
rJMFF018I15+          CCAAGGGTTGGTTGATGAGAGGGAAGATAGNATNTAACTCA                   
rJMSF042J10+          CCAAGGGTTGGTTGATGAGAGGGAAGATAGTATGTAACTCATTGTANTATCNAACCACAT
                      ____________________________________________________________
consensus             CCAAGGGTTGGTTGATGAGAGGGAAGATAGTATGTAACTCATTGTANTATCNAACCACAT