Contig 014073:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF018A08-                                       GAAATTTGTCACCCAACTCTTCTATTCTTTTC
JMSF041M17-                                       GAAATTTGTCACCCAACTCTTCTATTCTTTTC
                      ____________________________________________________________
consensus                                         GAAATTTGTCACCCAACTCTTCTATTCTTTTC
 
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JMSF018A08-           GTTTCTTGGCGGCCCTTTCCCAGTTTTCAGCATTACAAAACCAGAATTCAAAGAACGCCT
JMSF041M17-           GTTTCTTGGCGGCCCTTTCCCAGTTTTCAGCATTACAAAACCAGAATTCAAAGAACGCCT
                      ____________________________________________________________
consensus             GTTTCTTGGCGGCCCTTTCCCAGTTTTCAGCATTACAAAACCAGAATTCAAAGAACGCCT
 
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JMSF018A08-           CTCCCTCTCCCGAACCCAAACCCAGAATCAAGAAGGGGTTGGTAAAGTTTCCGCTTTTGA
JMSF041M17-           CTCCCTCTCCCGAACCCAAACCCAGAATCAAGAAGGGGTTGGTAAAGTTTCCGCTTTTGA
                      ____________________________________________________________
consensus             CTCCCTCTCCCGAACCCAAACCCAGAATCAAGAAGGGGTTGGTAAAGTTTCCGCTTTTGA
 
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JMSF018A08-           GAAAAATGAGCCTCAGAAATGGCTTCAAGGCCCGGCGATCTCTGTACCATTTATGGAAGG
JMSF041M17-           GAAAAATGAGCCTCAGAAATGGCTTCAAGGCCCGGCGATCTCTGTACCATTTATGGAAGG
                      ____________________________________________________________
consensus             GAAAAATGAGCCTCAGAAATGGCTTCAAGGCCCGGCGATCTCTGTACCATTTATGGAAGG
 
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JMSF018A08-           AATCCTCCGCCGTAGATTCGGTCGGAGCGTCGAAGCTTCTTCGGACCCATCATTGCCACC
JMSF041M17-           AATCCTCCGCCGTAGATTCGGTCGGAGCGTCGAAGCTTCTTCGGACCCATCATTGCCACC
                      ____________________________________________________________
consensus             AATCCTCCGCCGTAGATTCGGTCGGAGCGTCGAAGCTTCTTCGGACCCATCATTGCCACC
 
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JMSF018A08-           AGCAAGCTAAAGTGTATTATCGGTTCCCTCAATCCATTTTAAAAAAGACCAAGGAGGTTG
JMSF041M17-           AGCAAGCTAAAGTGTATTATCGGTTCCCTCAATCCATTTTAAAAAAGACCAAGGAGGTTG
                      ____________________________________________________________
consensus             AGCAAGCTAAAGTGTATTATCGGTTCCCTCAATCCATTTTAAAAAAGACCAAGGAGGTTG
 
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JMSF018A08-           AGCTCTCGGTTCCCAGCATAATTTCTCTACCGTTCTCCTCCCGGAGTAGCTCCACCGCCG
JMSF041M17-           AGCTCTCGGTTCCCAGCATAATTTCTCTACCGTTCTCCTCCCGGAGTAGCTCCACCGCCG
                      ____________________________________________________________
consensus             AGCTCTCGGTTCCCAGCATAATTTCTCTACCGTTCTCCTCCCGGAGTAGCTCCACCGCCG
 
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JMSF018A08-           CCGCCGCCGCGA                                                
JMSF041M17-           CCGCCGCCGCGAAGGCTGGATTGGTCGGGTGGTACTTAGAATTGTTGAAGACGCGGCCTA
                      ____________________________________________________________
consensus             CCGCCGCCGCGAAGGCTGGATTGGTCGGGTGGTACTTAGAATTGTTGAAGACGCGGCCTA
 
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JMSF041M17-           TTCTCACCAAGAGCATCACCTGTGCTGTTATCTACACCGCCGCCGATTTTTCATCTCAGA
rJMSF018A08+               ACCAAGAGCATCACCTGTGCTGTTATCTACACCGCCGCCGATTTTTCATCTCAGA
rJMSF041M17+                                        TCTACACCGCCGCCGATTTTTCATCTCAGA
                      ____________________________________________________________
consensus             TTCTCACCAAGAGCATCACCTGTGCTGTTATCTACACCGCCGCCGATTTTTCATCTCAGA
 
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JMSF041M17-           TACTTTCA-GGTTCATCATTAGAGCAGTTTGATCTTGTAAGGACACTACGCATGGCTGGT
rJMSF018A08+          TACTTTCA-GGTTCATCATTAGAGCAGTTTGATCTNGTAAGGACACTACGCATGGCTGGT
rJMSF041M17+          TACTTTCAGGGTTCATCATTAGAGCAGTTTGATCTTGTAAGGACACTACGCATGGCTGGT
                      ____________________________________________________________
consensus             TACTTTCA-GGTTCATCATTAGAGCAGTTTGATCTTGTAAGGACACTACGCATGGCTGGT
 
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JMSF041M17-           TATGGGATGGTGATTTTAGGGCCTTCCCTGCATTATTGGTTCAACTTTATTTCAATGGCT
rJMSF018A08+          TATGGGATGGTGATTTTAGGGCCTTCCCTGCATTATTGGTTCAACTTTATTTCAATGGCT
rJMSF041M17+          TATGGGATGGTGATTTTAGGGCCTTCCCTGCATTATTGGTTCAACTTTATTTCAATGGCT
                      ____________________________________________________________
consensus             TATGGGATGGTGATTTTAGGGCCTTCCCTGCATTATTGGTTCAACTTTATTTCAATGGCT
 
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JMSF041M17-           TTTCCAAAGCGCGATCTTAGATCAACATTGACAAAGATGGCTATGGGGCAGACTGTATTT
rJMSF018A08+          TTTCCAAAGCGCGATCTTAGATCAACATTGACAAAGATGGCTATGGGGCAGACTGTATTT
rJMSF041M17+          TTTCCAAAGCGCGATCTTAGATCAACATTGACAAAGATGGCTATGGGGCAGACTGTATTT
                      ____________________________________________________________
consensus             TTTCCAAAGCGCGATCTTAGATCAACATTGACAAAGATGGCTATGGGGCAGACTGTATTT
 
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JMSF041M17-           GGACCTATCATGACTGCTGTTTTCTTCTCTGTAAATTCTGCTTTGCAAGGTGAAAATGGT
rJMSF018A08+          GGACCTATCATGACTGCTGTTTTCTTCTCTGTAAATTCTGCTTTGCAAGGTGAAAATGGT
rJMSF041M17+          GGACCTATCATGACTGCTGTTTTCTTCTCTGTAAATTCTGCTTTGCAAGGTGAAAATGGT
                      ____________________________________________________________
consensus             GGACCTATCATGACTGCTGTTTTCTTCTCTGTAAATTCTGCTTTGCAAGGTGAAAATGGT
 
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JMSF041M17-           GCTGAGATTCTTGCCAGACTAAAGCGGG                                
rJMSF018A08+          GCTGAGATTCTTGCCAGACTAAAGCGGGATGTGATTCCCACGATGAAAAGCGGTTTTATG
rJMSF041M17+          GCTGAGATTCTTGCCAGACTAAAGCGGGATGTGATTCCCACGATGAAAAGCGGTTTTATG
                      ____________________________________________________________
consensus             GCTGAGATTCTTGCCAGACTAAAGCGGGATGTGATTCCCACGATGAAAAGCGGTTTTATG
 
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rJMSF018A08+          TTCTGGCCAATGTGTGATTTCATCACATTCAGATTCATCCCCGTCCATCTACAGCCACTT
rJMSF041M17+          TTCTGGCCAATGTGTGATTTCATCACATTCAGATTCATCCCCGTCCATCTACAGCCACTT
                      ____________________________________________________________
consensus             TTCTGGCCAATGTGTGATTTCATCACATTCAGATTCATCCCCGTCCATCTACAGCCACTT
 
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rJMSF018A08+          GTTAGCAACTCGTTTTCGTATATATGGAATGTATACCTGACTTATACAGCGAGCAAAGAG
rJMSF041M17+          GTTAGCAACTCGTTTTCGTATATATGGAATGTATACCTGACTTATACAGCGAGCAAAGAG
                      ____________________________________________________________
consensus             GTTAGCAACTCGTTTTCGTATATATGGAATGTATACCTGACTTATACAGCGAGCAAAGAG
 
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rJMSF018A08+          AAGGTAGCCACAGCATGATCCTGTTAATAGTAGTCATCAGAGTTCGTTTTTTCCTCTTTC
rJMSF041M17+          AAGGTAGCCACAGCATGATCCTGTTAATAGTAGTCATCAGAGTTCGTTTTTTCCTCTTTC
                      ____________________________________________________________
consensus             AAGGTAGCCACAGCATGATCCTGTTAATAGTAGTCATCAGAGTTCGTTTTTTCCTCTTTC
 
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rJMSF018A08+          TCTCGGGCTGTCTGCTCGAAGGCATTCTGGAAGCGGAATTGTTAGTGACACGTTACATTG
rJMSF041M17+          TCTCGGGCTGTCTGCTCGAAGGCATTCTGGAAGCGGAATTGTTAGTGACACGTTACATTG
                      ____________________________________________________________
consensus             TCTCGGGCTGTCTGCTCGAAGGCATTCTGGAAGCGGAATTGTTAGTGACACGTTACATTG
 
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rJMSF018A08+          GTAGTTGATGCCAGAAGACGCAACGCTCTAGCCTAGAACAGCTACGAGGATACTTAGATA
rJMSF041M17+          GTAGTTGATGCCAGAAGACGCAACGCTCTAGCCTAGAACAGCTACGAGGATACTTAGATA
                      ____________________________________________________________
consensus             GTAGTTGATGCCAGAAGACGCAACGCTCTAGCCTAGAACAGCTACGAGGATACTTAGATA
 
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rJMSF018A08+          CCCGTTATAATGCAGATCCAATCTATGGAGCAACAAAACTTACATTTTTGTATTGTTTTT
rJMSF041M17+          CCCGTTATAATGCAGATCCAATCTATGGAGCAACAAAACTTACATTTTTGTATTGTTTTT
                      ____________________________________________________________
consensus             CCCGTTATAATGCAGATCCAATCTATGGAGCAACAAAACTTACATTTTTGTATTGTTTTT
 
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rJMSF018A08+          CATACCTTTCATTTTGTTAACTTTTGATCTGAATTTCTACCTGTACCATTT         
rJMSF041M17+          CATACCTTTCATTTTGTTAACTTTTGATCTGAATTTCTACCTGTACCATTTTCTTGCTGT
                      ____________________________________________________________
consensus             CATACCTTTCATTTTGTTAACTTTTGATCTGAATTTCTACCTGTACCATTTTCTTGCTGT