Contig 014065:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF040I01Sequence589014065 (2)ref|XP_009759723.1|148PREDICTED: uncharacterized protein LOC104212204 [Nicotiana sylvestris]731014065 (2)ref|XP_009759723.1|162PREDICTED: uncharacterized protein LOC104212204 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF040I01-                                                                  GGTCC
                      ____________________________________________________________
consensus                                                                    GGTCC
 
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JMSF040I01-           TCTTCAATTCATTCCAAAATAAACCAAAAAAAGAAAACACAACACAACATCTCTCTCTCA
                      ____________________________________________________________
consensus             TCTTCAATTCATTCCAAAATAAACCAAAAAAAGAAAACACAACACAACATCTCTCTCTCA
 
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JMSF040I01-           CACACACAGAGCTAAAAACAAGAAAAAATGGAGATAGAACAAATAACCCCACAAATAGTT
                      ____________________________________________________________
consensus             CACACACAGAGCTAAAAACAAGAAAAAATGGAGATAGAACAAATAACCCCACAAATAGTT
 
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JMSF040I01-           GGCAAGAAACTATGGAACATTGTGAGGATAGTTTTCTACATGGTGAGGAAAGGCGTTTCG
                      ____________________________________________________________
consensus             GGCAAGAAACTATGGAACATTGTGAGGATAGTTTTCTACATGGTGAGGAAAGGCGTTTCG
 
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JMSF040I01-           AAGAGCAAGCTAATTCACCTTAACCTCCAACTCGCCCTTCAACTCATGCTAAAGCGAGGC
rJMSF040I01+                                                           TAAAGCGAGGC
                      ____________________________________________________________
consensus             AAGAGCAAGCTAATTCACCTTAACCTCCAACTCGCCCTTCAACTCATGCTAAAGCGAGGC
 
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JMSF040I01-           AAACTCGCCGCCGGCAAGGCGCTGAGCCACCACTACTCCGCCCTCATCACCTGCCGCTCC
rJMSF040I01+          AAACTCGCCGCCGGCAAGGCGCTGAGCCACCANTACTCCGCCCTCATCACCTGCCGCTCC
                      ____________________________________________________________
consensus             AAACTCGCCGCCGGCAAGGCGCTGAGCCACCACTACTCCGCCCTCATCACCTGCCGCTCC
 
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JMSF040I01-           CACCACTCCGTCAGAGTCTTCACCGGCCACGCCCCGCACGACTACGAGTTCAGCTGCAGC
rJMSF040I01+          CACCACTCCGTCAGAGTNTTCACCGGCCACGCCCCGCACGACTACGAGTTCAGCTGCAGC
                      ____________________________________________________________
consensus             CACCACTCCGTCAGAGTCTTCACCGGCCACGCCCCGCACGACTACGAGTTCAGCTGCAGC
 
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JMSF040I01-           AACACCCCCGCCGCCTTGTTCCACCACCACGCCAGCAAGCGGAGCAGGAACCACCGCCGC
rJMSF040I01+          AACACCCCCGCCGCCTTGTTCCACCACCACGCCAGCAAGCGGAGCAGGAACCACCGCCGC
                      ____________________________________________________________
consensus             AACACCCCCGCCGCCTTGTTCCACCACCACGCCAGCAAGCGGAGCAGGAACCACCGCCGC
 
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JMSF040I01-           GAAAACAAGATCGACGCCGATGTTTTCCAGAGGGTTTTCGAGATGCTGAACGACCGTCCC
rJMSF040I01+          GAAAACAAGATNGACGCCGATGTTTTCCAGAGGGTTTTCGAGATGCTGAACGACCGTCCC
                      ____________________________________________________________
consensus             GAAAACAAGATCGACGCCGATGTTTTCCAGAGGGTTTTCGAGATGCTGAACGACCGTCCC
 
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JMSF040I01-           GAGGCGGCGGTTGATGGGTCTCCTTTCACGGCGCTGCCGGGGTTCGGGCGGACCCCCACG
rJMSF040I01+          GAGGCGGCGGTTGATGGGTCTCCTTTCACGGCGCTGCCGGGGTTCGGGCGGACCCCCACG
                      ____________________________________________________________
consensus             GAGGCGGCGGTTGATGGGTCTCCTTTCACGGCGCTGCCGGGGTTCGGGCGGACCCCCACG
 
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JMSF040I01-           GTGAGGCAGCTGCGAGTGACGGATTCGCCCTTCCCGTTGAAGGA                
rJMSF040I01+          GTGAGGCAGCTGCGAGTGACGGATTCGCCCTTCCCGTTGAAGGATTCCGAGGAGATCAAC
                      ____________________________________________________________
consensus             GTGAGGCAGCTGCGAGTGACGGATTCGCCCTTCCCGTTGAAGGATTCCGAGGAGATCAAC
 
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rJMSF040I01+          TCCCAGGTGGATATGGACGCCGAGGAGTTCATCAGGAAGTTCTATACACAATTGAATNTA
                      ____________________________________________________________
consensus             TCCCAGGTGGATATGGACGCCGAGGAGTTCATCAGGAAGTTCTATACACAATTGAATNTA
 
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rJMSF040I01+          CAAAGCAAGAAAGCCGCTCTTGAATCTCCATCCCCATATCACATCAGAGCTCGATGAACA
                      ____________________________________________________________
consensus             CAAAGCAAGAAAGCCGCTCTTGAATCTCCATCCCCATATCACATCAGAGCTCGATGAACA
 
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rJMSF040I01+          GAAAACTGAAACTNTGATCAAGAATNTCCGGTGAAGATGATGATGTGAATTACGACGAGG
                      ____________________________________________________________
consensus             GAAAACTGAAACTNTGATCAAGAATNTCCGGTGAAGATGATGATGTGAATTACGACGAGG
 
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rJMSF040I01+          TTTTCCATGGTTCTCTTGCAACATTTGCAAACATGTCACACTGTTTTTCCATGGAAGATC
                      ____________________________________________________________
consensus             TTTTCCATGGTTCTCTTGCAACATTTGCAAACATGTCACACTGTTTTTCCATGGAAGATC
 
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rJMSF040I01+          AAGATCACCTCAAACAAACCATCATNTTCAACAAAGTCACGTGCCTCCCACATGCCCTTA
                      ____________________________________________________________
consensus             AAGATCACCTCAAACAAACCATCATNTTCAACAAAGTCACGTGCCTCCCACATGCCCTTA
 
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rJMSF040I01+          ATTTCGAGCAATTTCCACTTTTTTTTTTCTTTTCTTTTCCCCCCACTGAGACAGTGAGGG
                      ____________________________________________________________
consensus             ATTTCGAGCAATTTCCACTTTTTTTTTTCTTTTCTTTTCCCCCCACTGAGACAGTGAGGG