Contig 014032:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF023K24Sequence628017830ref|XP_009598218.1|2e-26PREDICTED: protein DCL, chloroplastic [Nicotiana tomentosiformis]766014032 (3)ref|XP_009791824.1|1e-51PREDICTED: protein DCL, chloroplastic [Nicotiana sylvestris]
JMSF034N12Sequence716014032 (3)ref|XP_009598218.1|9e-92PREDICTED: protein DCL, chloroplastic [Nicotiana tomentosiformis]759014032 (3)ref|XP_009791824.1|5e-76PREDICTED: protein DCL, chloroplastic [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF034N12-                                                   GGCAAACTATGGCTGCTCCG
                      ____________________________________________________________
consensus                                                     GGCAAACTATGGCTGCTCCG
 
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JMSF034N12-           CTGCTCTTCAGGGTCGCGTCGCTTCTCCGACTGCGGTTCTACCACCACCAGCAAAGCCGT
                      ____________________________________________________________
consensus             CTGCTCTTCAGGGTCGCGTCGCTTCTCCGACTGCGGTTCTACCACCACCAGCAAAGCCGT
 
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JMSF034N12-           GGCCTCTGCTTCGGTCTCCTTAATCGCCGACTGTTTTGCGCTTCTACTGAGCCTTCTCAG
                      ____________________________________________________________
consensus             GGCCTCTGCTTCGGTCTCCTTAATCGCCGACTGTTTTGCGCTTCTACTGAGCCTTCTCAG
 
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JMSF034N12-           ACACCCGAGGACTCATCTTCTGCGGGCCAGAACCCGGACACCACCGTGCTCAGGGTGAAC
                      ____________________________________________________________
consensus             ACACCCGAGGACTCATCTTCTGCGGGCCAGAACCCGGACACCACCGTGCTCAGGGTGAAC
 
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JMSF034N12-           GAGCCGCCTCGGTTCCCGAGGTGGTCGGAACTAGATTACCAGAAATGGAAAGAGAAAGAA
                      ____________________________________________________________
consensus             GAGCCGCCTCGGTTCCCGAGGTGGTCGGAACTAGATTACCAGAAATGGAAAGAGAAAGAA
 
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JMSF034N12-           GCTGAGATACTCCAAGACATCAAGCCCGTCATTTCCCTCGTCAAAGATATTATTCACTCT
                      ____________________________________________________________
consensus             GCTGAGATACTCCAAGACATCAAGCCCGTCATTTCCCTCGTCAAAGATATTATTCACTCT
 
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JMSF034N12-           ACTAGGTATTTGGATGGAGAACGCCTTACAGCTGAAGATGAAAAAATTGTGGTAGAGAAG
rJMSF023K24+                                     ACAGCTGAAGATGAAAAAATTGTGGTAGAGAAG
rJMSF034N12+            TAGGTATTTGGATGGAGAACGCCTTACAGCTGAAGATGAAAAAATTGTGGTAGAGAAG
                      ____________________________________________________________
consensus             ACTAGGTATTTGGATGGAGAACGCCTTACAGCTGAAGATGAAAAAATTGTGGTAGAGAAG
 
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JMSF034N12-           CTTCTTGCTCATCACCCTCATTGTGAAGATAAAATTGGCTGTGGCCTTGATTCAATTATG
rJMSF023K24+          CTTCTTGCTCATCACCCTCATTGTGAAGATAAAATTGGCTGTGGCCTTGATTCAATTATG
rJMSF034N12+          CTTCTTGCTCATCACCCTCATTGTGAAGATAAAATTGGCTGTGGCCTTGATTCAATTATG
                      ____________________________________________________________
consensus             CTTCTTGCTCATCACCCTCATTGTGAAGATAAAATTGGCTGTGGCCTTGATTCAATTATG
 
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JMSF034N12-           GTTGATCGTCATCCCCAATTCAGACAGTCGAGGTGCCTCTTCGTGGTGAGAACAGACGGC
rJMSF023K24+          GTTGATCGTCATCCCCAATTCAGACAGTCGAGGTGCCTCTTCGTGGTGAGAACAGACGGC
rJMSF034N12+          GTTGATCGTCATCCCCAATTCAGACAGTCGAGGTGCCTCTTCGTGGTGAGAACAGACGGC
                      ____________________________________________________________
consensus             GTTGATCGTCATCCCCAATTCAGACAGTCGAGGTGCCTCTTCGTGGTGAGAACAGACGGC
 
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JMSF034N12-           GGATGGATAGATTTCTCCTACCACAAGTGTCTCAGATGGTATGTTCGCGATAGGTATCCA
rJMSF023K24+          GGATGGATAGATTTCTCCTACCACAAGTGTCTCAGATGGTATGTTCGCGATAGGTATCCA
rJMSF034N12+          GGATGGATAGATTTCTCCTACCACAAGTGTCTCAGATGGTATGTTCGCGATAGGTATCCA
                      ____________________________________________________________
consensus             GGATGGATAGATTTCTCCTACCACAAGTGTCTCAGATGGTATGTTCGCGATAGGTATCCA
 
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JMSF034N12-           TCCTTTGCCGAAATATTTATTAGAAAACATTTGAAAATGGGAAGTTAACTCTCGTCATCT
rJMSF023K24+          TCCTTTGCCGAAATATTTATTAGAAAACATTTGAAAATGGGAAGTTAACTCTCGTCATCT
rJMSF034N12+          TCCTTTGCCGAAATATTTATTAGAAAACATTTGAAAATGGGAAGTTAACTCTCGTCATCT
                      ____________________________________________________________
consensus             TCCTTTGCCGAAATATTTATTAGAAAACATTTGAAAATGGGAAGTTAACTCTCGTCATCT
 
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JMSF034N12-           CGATCGAGCACCAAGAAGCTGTAATGCTGTGGGTATTGGTTTGGCATACATTTTTGTAGC
rJMSF023K24+          CGATCGAGCACCAAGAAGCTGTAATGCTGTGGGTATTGGTTTGGCATACATTTTTGTAG-
rJMSF034N12+          CGATCGAGCACCAAGAAGCTGTAATGCTGTGGGTATTGGTTTGGCATACATTTTTGTAGC
                      ____________________________________________________________
consensus             CGATCGAGCACCAAGAAGCTGTAATGCTGTGGGTATTGGTTTGGCATACATTTTTGTAGC
 
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JMSF034N12-           AT                                                          
rJMSF023K24+          --CATTTGACCCACACATAGCCAAATACATGCTGCAGACCATCACCTTCACGGTAGTTTA
rJMSF034N12+          ATCATTTGACCCACACATAGCCAAATACATGCTGCAGACCATCACCTTCACGGTAGTTTA
                      ____________________________________________________________
consensus             ATCATTTGACCCACACATAGCCAAATACATGCTGCAGACCATCACCTTCACGGTAGTTTA
 
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rJMSF023K24+          ATTGGCGGGACATGGAAAATGAATGTAGTAAATGTTAATTAGTTGGGATGTTGACTGTCC
rJMSF034N12+          ATTGGCGGGACATGGAAAATGAATGTAGTAAATGTTAATTAGTTGGGATGTTGACTGTCC
                      ____________________________________________________________
consensus             ATTGGCGGGACATGGAAAATGAATGTAGTAAATGTTAATTAGTTGGGATGTTGACTGTCC
 
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rJMSF023K24+          CGGCGAATACTTGCGTTGCATTTATTCTGCCGTGGCATTGCACAAGTAATTCTGGCAATG
rJMSF034N12+          CGGCGAATACTTGCGTTGCATTTATTCTGCCGTGGCATTGCACAAGTAATTCTGGCAATG
                      ____________________________________________________________
consensus             CGGCGAATACTTGCGTTGCATTTATTCTGCCGTGGCATTGCACAAGTAATTCTGGCAATG
 
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rJMSF023K24+          ACATGATTAGGTGGGCTGATGATATTTGTGT                             
rJMSF034N12+          ACATGATTAGGTGGGCTGATGATATTTGTGTTGGAAGTTGATGAACACAACACAGGACAT
                      ____________________________________________________________
consensus             ACATGATTAGGTGGGCTGATGATATTTGTGTTGGAAGTTGATGAACACAACACAGGACAT