Contig 014032:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF023K24Sequence628017830ref|XP_009598218.1|2e-26PREDICTED: protein DCL, chloroplastic [Nicotiana tomentosiformis]766014032 (3)ref|XP_009791824.1|1e-51PREDICTED: protein DCL, chloroplastic [Nicotiana sylvestris]
JMSF034N12Sequence716014032 (3)ref|XP_009598218.1|9e-92PREDICTED: protein DCL, chloroplastic [Nicotiana tomentosiformis]759014032 (3)ref|XP_009791824.1|5e-76PREDICTED: protein DCL, chloroplastic [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF034N12- GGCAAACTATGGCTGCTCCG
                      ____________________________________________________________
consensus GGCAAACTATGGCTGCTCCG
 
. : . : . : . : . : . :
JMSF034N12- CTGCTCTTCAGGGTCGCGTCGCTTCTCCGACTGCGGTTCTACCACCACCAGCAAAGCCGT
                      ____________________________________________________________
consensus CTGCTCTTCAGGGTCGCGTCGCTTCTCCGACTGCGGTTCTACCACCACCAGCAAAGCCGT
 
. : . : . : . : . : . :
JMSF034N12- GGCCTCTGCTTCGGTCTCCTTAATCGCCGACTGTTTTGCGCTTCTACTGAGCCTTCTCAG
                      ____________________________________________________________
consensus GGCCTCTGCTTCGGTCTCCTTAATCGCCGACTGTTTTGCGCTTCTACTGAGCCTTCTCAG
 
. : . : . : . : . : . :
JMSF034N12- ACACCCGAGGACTCATCTTCTGCGGGCCAGAACCCGGACACCACCGTGCTCAGGGTGAAC
                      ____________________________________________________________
consensus ACACCCGAGGACTCATCTTCTGCGGGCCAGAACCCGGACACCACCGTGCTCAGGGTGAAC
 
. : . : . : . : . : . :
JMSF034N12- GAGCCGCCTCGGTTCCCGAGGTGGTCGGAACTAGATTACCAGAAATGGAAAGAGAAAGAA
                      ____________________________________________________________
consensus GAGCCGCCTCGGTTCCCGAGGTGGTCGGAACTAGATTACCAGAAATGGAAAGAGAAAGAA
 
. : . : . : . : . : . :
JMSF034N12- GCTGAGATACTCCAAGACATCAAGCCCGTCATTTCCCTCGTCAAAGATATTATTCACTCT
                      ____________________________________________________________
consensus GCTGAGATACTCCAAGACATCAAGCCCGTCATTTCCCTCGTCAAAGATATTATTCACTCT
 
. : . : . : . : . : . :
JMSF034N12- ACTAGGTATTTGGATGGAGAACGCCTTACAGCTGAAGATGAAAAAATTGTGGTAGAGAAG
rJMSF023K24+ ACAGCTGAAGATGAAAAAATTGTGGTAGAGAAG
rJMSF034N12+ TAGGTATTTGGATGGAGAACGCCTTACAGCTGAAGATGAAAAAATTGTGGTAGAGAAG
                      ____________________________________________________________
consensus ACTAGGTATTTGGATGGAGAACGCCTTACAGCTGAAGATGAAAAAATTGTGGTAGAGAAG
 
. : . : . : . : . : . :
JMSF034N12- CTTCTTGCTCATCACCCTCATTGTGAAGATAAAATTGGCTGTGGCCTTGATTCAATTATG
rJMSF023K24+ CTTCTTGCTCATCACCCTCATTGTGAAGATAAAATTGGCTGTGGCCTTGATTCAATTATG
rJMSF034N12+ CTTCTTGCTCATCACCCTCATTGTGAAGATAAAATTGGCTGTGGCCTTGATTCAATTATG
                      ____________________________________________________________
consensus CTTCTTGCTCATCACCCTCATTGTGAAGATAAAATTGGCTGTGGCCTTGATTCAATTATG
 
. : . : . : . : . : . :
JMSF034N12- GTTGATCGTCATCCCCAATTCAGACAGTCGAGGTGCCTCTTCGTGGTGAGAACAGACGGC
rJMSF023K24+ GTTGATCGTCATCCCCAATTCAGACAGTCGAGGTGCCTCTTCGTGGTGAGAACAGACGGC
rJMSF034N12+ GTTGATCGTCATCCCCAATTCAGACAGTCGAGGTGCCTCTTCGTGGTGAGAACAGACGGC
                      ____________________________________________________________
consensus GTTGATCGTCATCCCCAATTCAGACAGTCGAGGTGCCTCTTCGTGGTGAGAACAGACGGC
 
. : . : . : . : . : . :
JMSF034N12- GGATGGATAGATTTCTCCTACCACAAGTGTCTCAGATGGTATGTTCGCGATAGGTATCCA
rJMSF023K24+ GGATGGATAGATTTCTCCTACCACAAGTGTCTCAGATGGTATGTTCGCGATAGGTATCCA
rJMSF034N12+ GGATGGATAGATTTCTCCTACCACAAGTGTCTCAGATGGTATGTTCGCGATAGGTATCCA
                      ____________________________________________________________
consensus GGATGGATAGATTTCTCCTACCACAAGTGTCTCAGATGGTATGTTCGCGATAGGTATCCA
 
. : . : . : . : . : . :
JMSF034N12- TCCTTTGCCGAAATATTTATTAGAAAACATTTGAAAATGGGAAGTTAACTCTCGTCATCT
rJMSF023K24+ TCCTTTGCCGAAATATTTATTAGAAAACATTTGAAAATGGGAAGTTAACTCTCGTCATCT
rJMSF034N12+ TCCTTTGCCGAAATATTTATTAGAAAACATTTGAAAATGGGAAGTTAACTCTCGTCATCT
                      ____________________________________________________________
consensus TCCTTTGCCGAAATATTTATTAGAAAACATTTGAAAATGGGAAGTTAACTCTCGTCATCT
 
. : . : . : . : . : . :
JMSF034N12- CGATCGAGCACCAAGAAGCTGTAATGCTGTGGGTATTGGTTTGGCATACATTTTTGTAGC
rJMSF023K24+ CGATCGAGCACCAAGAAGCTGTAATGCTGTGGGTATTGGTTTGGCATACATTTTTGTAG-
rJMSF034N12+ CGATCGAGCACCAAGAAGCTGTAATGCTGTGGGTATTGGTTTGGCATACATTTTTGTAGC
                      ____________________________________________________________
consensus CGATCGAGCACCAAGAAGCTGTAATGCTGTGGGTATTGGTTTGGCATACATTTTTGTAGC
 
. : . : . : . : . : . :
JMSF034N12- AT
rJMSF023K24+ --CATTTGACCCACACATAGCCAAATACATGCTGCAGACCATCACCTTCACGGTAGTTTA
rJMSF034N12+ ATCATTTGACCCACACATAGCCAAATACATGCTGCAGACCATCACCTTCACGGTAGTTTA
                      ____________________________________________________________
consensus ATCATTTGACCCACACATAGCCAAATACATGCTGCAGACCATCACCTTCACGGTAGTTTA
 
. : . : . : . : . : . :
rJMSF023K24+ ATTGGCGGGACATGGAAAATGAATGTAGTAAATGTTAATTAGTTGGGATGTTGACTGTCC
rJMSF034N12+ ATTGGCGGGACATGGAAAATGAATGTAGTAAATGTTAATTAGTTGGGATGTTGACTGTCC
                      ____________________________________________________________
consensus ATTGGCGGGACATGGAAAATGAATGTAGTAAATGTTAATTAGTTGGGATGTTGACTGTCC
 
. : . : . : . : . : . :
rJMSF023K24+ CGGCGAATACTTGCGTTGCATTTATTCTGCCGTGGCATTGCACAAGTAATTCTGGCAATG
rJMSF034N12+ CGGCGAATACTTGCGTTGCATTTATTCTGCCGTGGCATTGCACAAGTAATTCTGGCAATG
                      ____________________________________________________________
consensus CGGCGAATACTTGCGTTGCATTTATTCTGCCGTGGCATTGCACAAGTAATTCTGGCAATG
 
. : . : . : . : . : . :
rJMSF023K24+ ACATGATTAGGTGGGCTGATGATATTTGTGT
rJMSF034N12+ ACATGATTAGGTGGGCTGATGATATTTGTGTTGGAAGTTGATGAACACAACACAGGACAT
                      ____________________________________________________________
consensus ACATGATTAGGTGGGCTGATGATATTTGTGTTGGAAGTTGATGAACACAACACAGGACAT