clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF021F15 | Sequence | 675 | 003502 (3) | ref|XP_010547688.1| | 3e-58 | PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mito | 802 | 014027 (2) | ref|XP_009791312.1| | 1e-113 | PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mito |
JMSF033B09 | Sequence | 692 | 003502 (3) | ref|XP_010547688.1| | 3e-65 | PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mito | 759 | 014027 (2) | ref|XP_009791312.1| | 3e-102 | PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mito |
This contig is upended
. : . : . : . : . : . :
rJMSF021F15+ TGACTATGATGATCCTGNAAATACGGTATCAGT
____________________________________________________________
consensus TGACTATGATGATCCTGNAAATACGGTATCAGT
. : . : . : . : . : . :
rJMSF021F15+ TCATGCTACAACAGCTCATCATTCTGAAAGTGTAATCCTGGAGTTGCAGCCTTCTGAAAG
rJMSF033B09+ ATTCTGAAAGTGTAATCCTGGAGTTGCAGCCTTCTGAAAG
____________________________________________________________
consensus TCATGCTACAACAGCTCATCATTCTGAAAGTGTAATCCTGGAGTTGCAGCCTTCTGAAAG
. : . : . : . : . : . :
rJMSF021F15+ AGGCTTGCAGGGTCAGATTATAGAATCAGATCTAGTTTTATGGACTGTTGGATCAAAACC
rJMSF033B09+ AGGC-TGCAGGGTCAGATTATAGAATCAGATCTAGTTTTATGGACTGTTGGATCAAAACC
____________________________________________________________
consensus AGGCTTGCAGGGTCAGATTATAGAATCAGATCTAGTTTTATGGACTGTTGGATCAAAACC
. : . : . : . : . : . :
rJMSF021F15+ ACTACTTCCTGAGATAGAACATGACGATTATCCCTATGAACTTCCTCTTAATGGTCGAGG
rJMSF033B09+ ACTACTTCCTGAGATAGAACATGACGATTATCCCTATGAACTTCCTCTTAATGGTCGAGG
____________________________________________________________
consensus ACTACTTCCTGAGATAGAACATGACGATTATCCCTATGAACTTCCTCTTAATGGTCGAGG
. : . : . : . : . : . :
rJMSF021F15+ GCAGGCAGAAACAGATGAAACCCTCCAAGTTAAGGGTCATCCACGCATATTTGCAGTTGG
rJMSF033B09+ GCAGGCAGAAACAGATGAAACCCTCCAAGTTAAGGGTCATCCACGCATATTTGCAGTTGG
____________________________________________________________
consensus GCAGGCAGAAACAGATGAAACCCTCCAAGTTAAGGGTCATCCACGCATATTTGCAGTTGG
. : . : . : . : . : . :
rJMSF021F15+ TGATGCTTCTGCATTAAGGGACACAAATGGAAAATTGCTTCCTGCCACTGCACAGGTTGC
rJMSF033B09+ TGATGCTTCTGCATTAAGGGACACAAATGGAAAATTGCTTCCTGCCACTGCACAGGTTGC
____________________________________________________________
consensus TGATGCTTCTGCATTAAGGGACACAAATGGAAAATTGCTTCCTGCCACTGCACAGGTTGC
. : . : . : . : . : . :
rJMSF021F15+ TTTCCAGCAGTCTGATTTTGCAGGGTGGAATTTGTGGGCTGCTATCAATGGTCGGCCACT
rJMSF033B09+ TTTCCAGCAGTCTGATTTTGCAGGGTGGAATTTGTGGGCTGCTATCAATGGTCGGCCACT
____________________________________________________________
consensus TTTCCAGCAGTCTGATTTTGCAGGGTGGAATTTGTGGGCTGCTATCAATGGTCGGCCACT
. : . : . : . : . : . :
rJMSF021F15+ ACTGCCATTTAGGTTTCAAAATTTAGGTGAAATGATGACTCTTGGTAAGTACGACGCTGC
rJMSF033B09+ ACTGCCATTTAGGTTTCAAAATTTAGGTGAAATGATGACTCTTGGTAAGTACGACGCTGC
____________________________________________________________
consensus ACTGCCATTTAGGTTTCAAAATTTAGGTGAAATGATGACTCTTGGTAAGTACGACGCTGC
. : . : . : . : . : . :
rJMSF021F15+ TGTTTCACCTAGTTTTGTTGATGGAGTTACCCTGGATGGTCTCGTTGGGCACACTGCGAG
rJMSF033B09+ TGTTTCACCTAGTTTTGTTGATGGAGTTACCCTGGATGGTCTCGTTGGGCACACTGCGAG
____________________________________________________________
consensus TGTTTCACCTAGTTTTGTTGATGGAGTTACCCTGGATGGTCTCGTTGGGCACACTGCGAG
. : . : . : . : . : . :
rJMSF021F15+ GAAAATAGCGTACTTGATCAGATTACCAACCAATGAGCACCGTGTAAAAGTGGGGGTCAG
rJMSF033B09+ GAAAATAGCGTACTTGATCAGATTACCAACCAATGAGCACCGTGTAAAAGTGGGGGTCAG
____________________________________________________________
consensus GAAAATAGCGTACTTGATCAGATTACCAACCAATGAGCACCGTGTAAAAGTGGGGGTCAG
. : . : . : . : . : . :
rJMSF021F15+ TTGGCTGGCAAAATCAACGGTGGATTCAGTTGCATCACTGCAGAATATGCTTAGTAAAGT
rJMSF033B09+ TTGGCTGGCAAAATCAACGGTGGATTCAGTTGCATCACTGCAGAATATGCTTAGTAAAGT
____________________________________________________________
consensus TTGGCTGGCAAAATCAACGGTGGATTCAGTTGCATCACTGCAGAATATGCTTAGTAAAGT
. : . : . : . : . : . :
rJMSF021F15+ CCTTTCAGGAAATTAGGTGTTATGGATTACCCGCATGAAGATTGTTTTTCTTTTTTAGTG
rJMSF033B09+ CCTTTCAGGAAATTAGGTGTTATGGATTACCCGCATGAAGATTGTTTTTCTTTTTTAGTG
____________________________________________________________
consensus CCTTTCAGGAAATTAGGTGTTATGGATTACCCGCATGAAGATTGTTTTTCTTTTTTAGTG
. : . : . : . : . : . :
rJMSF021F15+ CACTTTACAAACTCTGCTCCAGACCCTTTTGCTTAATGGAAAATGCTTCTATTTGATACA
rJMSF033B09+ CACTTTACAAACTCTGCTCCAGACCCTTTTGCTTAATGGAAAATGCTTCTATTTGATACA
____________________________________________________________
consensus CACTTTACAAACTCTGCTCCAGACCCTTTTGCTTAATGGAAAATGCTTCTATTTGATACA
. : . : . : . : . : . :
rJMSF021F15+ ACTTTATTATTGTGAATATAAATTTGTATATTCCACATTCTTCTCTGTA
rJMSF033B09+ ACTTTATTATTGTGAATATAAATTTGTATATTCCACATTCTTCTCTGTATGGTGACAAAA
____________________________________________________________
consensus ACTTTATTATTGTGAATATAAATTTGTATATTCCACATTCTTCTCTGTATGGTGACAAAA