Contig 014027:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF021F15Sequence675003502 (3)ref|XP_010547688.1|3e-58PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mito802014027 (2)ref|XP_009791312.1|1e-113PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mito
JMSF033B09Sequence692003502 (3)ref|XP_010547688.1|3e-65PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mito759014027 (2)ref|XP_009791312.1|3e-102PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mito

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF021F15+                                     TGACTATGATGATCCTGNAAATACGGTATCAGT
                      ____________________________________________________________
consensus                                        TGACTATGATGATCCTGNAAATACGGTATCAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF021F15+          TCATGCTACAACAGCTCATCATTCTGAAAGTGTAATCCTGGAGTTGCAGCCTTCTGAAAG
rJMSF033B09+                              ATTCTGAAAGTGTAATCCTGGAGTTGCAGCCTTCTGAAAG
                      ____________________________________________________________
consensus             TCATGCTACAACAGCTCATCATTCTGAAAGTGTAATCCTGGAGTTGCAGCCTTCTGAAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF021F15+          AGGCTTGCAGGGTCAGATTATAGAATCAGATCTAGTTTTATGGACTGTTGGATCAAAACC
rJMSF033B09+          AGGC-TGCAGGGTCAGATTATAGAATCAGATCTAGTTTTATGGACTGTTGGATCAAAACC
                      ____________________________________________________________
consensus             AGGCTTGCAGGGTCAGATTATAGAATCAGATCTAGTTTTATGGACTGTTGGATCAAAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF021F15+          ACTACTTCCTGAGATAGAACATGACGATTATCCCTATGAACTTCCTCTTAATGGTCGAGG
rJMSF033B09+          ACTACTTCCTGAGATAGAACATGACGATTATCCCTATGAACTTCCTCTTAATGGTCGAGG
                      ____________________________________________________________
consensus             ACTACTTCCTGAGATAGAACATGACGATTATCCCTATGAACTTCCTCTTAATGGTCGAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF021F15+          GCAGGCAGAAACAGATGAAACCCTCCAAGTTAAGGGTCATCCACGCATATTTGCAGTTGG
rJMSF033B09+          GCAGGCAGAAACAGATGAAACCCTCCAAGTTAAGGGTCATCCACGCATATTTGCAGTTGG
                      ____________________________________________________________
consensus             GCAGGCAGAAACAGATGAAACCCTCCAAGTTAAGGGTCATCCACGCATATTTGCAGTTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF021F15+          TGATGCTTCTGCATTAAGGGACACAAATGGAAAATTGCTTCCTGCCACTGCACAGGTTGC
rJMSF033B09+          TGATGCTTCTGCATTAAGGGACACAAATGGAAAATTGCTTCCTGCCACTGCACAGGTTGC
                      ____________________________________________________________
consensus             TGATGCTTCTGCATTAAGGGACACAAATGGAAAATTGCTTCCTGCCACTGCACAGGTTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF021F15+          TTTCCAGCAGTCTGATTTTGCAGGGTGGAATTTGTGGGCTGCTATCAATGGTCGGCCACT
rJMSF033B09+          TTTCCAGCAGTCTGATTTTGCAGGGTGGAATTTGTGGGCTGCTATCAATGGTCGGCCACT
                      ____________________________________________________________
consensus             TTTCCAGCAGTCTGATTTTGCAGGGTGGAATTTGTGGGCTGCTATCAATGGTCGGCCACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF021F15+          ACTGCCATTTAGGTTTCAAAATTTAGGTGAAATGATGACTCTTGGTAAGTACGACGCTGC
rJMSF033B09+          ACTGCCATTTAGGTTTCAAAATTTAGGTGAAATGATGACTCTTGGTAAGTACGACGCTGC
                      ____________________________________________________________
consensus             ACTGCCATTTAGGTTTCAAAATTTAGGTGAAATGATGACTCTTGGTAAGTACGACGCTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF021F15+          TGTTTCACCTAGTTTTGTTGATGGAGTTACCCTGGATGGTCTCGTTGGGCACACTGCGAG
rJMSF033B09+          TGTTTCACCTAGTTTTGTTGATGGAGTTACCCTGGATGGTCTCGTTGGGCACACTGCGAG
                      ____________________________________________________________
consensus             TGTTTCACCTAGTTTTGTTGATGGAGTTACCCTGGATGGTCTCGTTGGGCACACTGCGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF021F15+          GAAAATAGCGTACTTGATCAGATTACCAACCAATGAGCACCGTGTAAAAGTGGGGGTCAG
rJMSF033B09+          GAAAATAGCGTACTTGATCAGATTACCAACCAATGAGCACCGTGTAAAAGTGGGGGTCAG
                      ____________________________________________________________
consensus             GAAAATAGCGTACTTGATCAGATTACCAACCAATGAGCACCGTGTAAAAGTGGGGGTCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF021F15+          TTGGCTGGCAAAATCAACGGTGGATTCAGTTGCATCACTGCAGAATATGCTTAGTAAAGT
rJMSF033B09+          TTGGCTGGCAAAATCAACGGTGGATTCAGTTGCATCACTGCAGAATATGCTTAGTAAAGT
                      ____________________________________________________________
consensus             TTGGCTGGCAAAATCAACGGTGGATTCAGTTGCATCACTGCAGAATATGCTTAGTAAAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF021F15+          CCTTTCAGGAAATTAGGTGTTATGGATTACCCGCATGAAGATTGTTTTTCTTTTTTAGTG
rJMSF033B09+          CCTTTCAGGAAATTAGGTGTTATGGATTACCCGCATGAAGATTGTTTTTCTTTTTTAGTG
                      ____________________________________________________________
consensus             CCTTTCAGGAAATTAGGTGTTATGGATTACCCGCATGAAGATTGTTTTTCTTTTTTAGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF021F15+          CACTTTACAAACTCTGCTCCAGACCCTTTTGCTTAATGGAAAATGCTTCTATTTGATACA
rJMSF033B09+          CACTTTACAAACTCTGCTCCAGACCCTTTTGCTTAATGGAAAATGCTTCTATTTGATACA
                      ____________________________________________________________
consensus             CACTTTACAAACTCTGCTCCAGACCCTTTTGCTTAATGGAAAATGCTTCTATTTGATACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF021F15+          ACTTTATTATTGTGAATATAAATTTGTATATTCCACATTCTTCTCTGTA           
rJMSF033B09+          ACTTTATTATTGTGAATATAAATTTGTATATTCCACATTCTTCTCTGTATGGTGACAAAA
                      ____________________________________________________________
consensus             ACTTTATTATTGTGAATATAAATTTGTATATTCCACATTCTTCTCTGTATGGTGACAAAA