Contig 014026:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN017E15Sequence402014026 (4)
JMSF020K09Sequence434014026 (4)ref|XP_010315556.1|9e-04PREDICTED: sacsin [Solanum lycopersicum]376014026 (4)ref|XP_004158223.1|7e-04PREDICTED: LOW QUALITY PROTEIN: sacsin-like [Cucumis sativus]
JMSF033A11Sequence445014026 (4)

Alignment

This contig is upended


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rJMSF020K09+                         GACCCGATACCCAACCAAAGGACAATCGCCAGCACCGGAGCATCG
JMFN017E15-                             CCGATACCCAACCAAAGGACGATCGCCAGGACCGGAGCATCG
JMSF020K09-                             CCGATACCCAACCAAAGGACAATCGCCAGCACCGGAGCATCG
                      ____________________________________________________________
consensus                            GACCCGATACCCAACCAAAGGACAATCGCCAGCACCGGAGCATCG
 
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rJMSF020K09+          GCGGTGGCGCTGAGGGATTTCCACCGGCCGATCACGCGATCATTGAAGGCGGTGCATCGA
JMFN017E15-           GCGGTGGCGCTTAGGGATTTCCACCGGCCGATCACGCGATCATTGAAGGAGGTGCATCGG
JMSF020K09-           GCGGTGGCGCTGAGGGATTTCCACCGGCCGATCACGCGATCATTGAAGGCGGTGCATCGA
                      ____________________________________________________________
consensus             GCGGTGGCGCTGAGGGATTTCCACCGGCCGATCACGCGATCATTGAAGGCGGTGCATCGA
 
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rJMSF020K09+          CGCAAAACATCTTCGTCGGCTACAGCAATGGCGGGATCATTTCGCGGAGGAGATTTCCGT
JMFN017E15-           CTCAAAACATCGTCGTCGGCTACAGCAATGGCGGGATCATTTCGCGGAGGAGATTTCCGT
JMSF020K09-           CGCAAAACATCTTCGTCGGCTACAGCAATGGCGGGATCATTTCGCGGAGGAGATTTCCGT
                      ____________________________________________________________
consensus             CGCAAAACATCTTCGTCGGCTACAGCAATGGCGGGATCATTTCGCGGAGGAGATTTCCGT
 
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rJMSF020K09+          TTCAGTAGCACCTCCCGGATCCTCCGTGTCAGATCGACTTTCTGACCAAAATCTTCCAGA
JMFN017E15-           TTCAGTAGCACCTCCCGGATCCTCCGTGTCAGATCGACTTTCTGACCAAAATCTTCCAGA
JMSF020K09-           TTCAGTAGCACCTCCCGGATCCTCCGTGTCAGATCGACTTTCTGACCAAAATCTTCCAGA
                      ____________________________________________________________
consensus             TTCAGTAGCACCTCCCGGATCCTCCGTGTCAGATCGACTTTCTGACCAAAATCTTCCAGA
 
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rJMSF020K09+          ATGGCCGACTCCACCGGCGAAATGTCCATCTCTTCCAATTATGGAACCCAAAAGCTAAGT
JMFN017E15-           ATGGCCGACTCCACCGGCGAAATGTCCATCTCTTCCAATTATGGAACCCAAAAGCTAAGT
JMSF020K09-           ATGGCCGACTCCACCGGCGAAATGTCCATCTCTTCCAATTATGGAACCCAAAAGCTAAGT
rJMSF033A11+                                                      AACCCAAAAGCTAAGT
                      ____________________________________________________________
consensus             ATGGCCGACTCCACCGGCGAAATGTCCATCTCTTCCAATTATGGAACCCAAAAGCTAAGT
 
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rJMSF020K09+          GTTCTTATGCCATTGATTATTTGGTGAAAATCAACATATGAATTTGCCTTTATCATCATC
JMFN017E15-           GTTATTATGCCATTGATTATTTGGTGAAAATCAACATATGAATTTGCCTTTATCATCATC
JMSF020K09-           GTTCTTATGCCATTGATTATTTGGTGAAAATCAACATATGAATTTGCCTTTATCATCATC
rJMSF033A11+          GTTCTTATGCCATTGATTATCTGGTGCAAATCAACATATGAATCCGCCNTTATCATCATC
                      ____________________________________________________________
consensus             GTTCTTATGCCATTGATTATTTGGTGAAAATCAACATATGAATTTGCCTTTATCATCATC
 
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rJMSF020K09+          TTAATCTTGTTTGGTTTTAAGACTTTGATA                              
JMFN017E15-           TTAATCTTGTTTGGTTTTAAGACTTTGATAATTAAATTTTTCAGATCTAAGATTT     
JMSF020K09-           TTAATCTTGTTTGGTTTTAAGACTTTGATAATTAAACTTTTCAGATCTAAGATTTTGAGC
rJMSF033A11+          TTNATCTCGTTTGATTTTAAGACTTTGATANTTGAACTCNTCAGATCTAAGATTTNGANC
                      ____________________________________________________________
consensus             TTAATCTTGTTTGGTTTTAAGACTTTGATAATTAAACTTTTCAGATCTAAGATTTTGAGC
 
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JMSF020K09-           ATGCTTGAATAGTTGGACT                                         
rJMSF033A11+          ATGCNNGAATANTTGGACTCTNATAATAACNTGCTCATCAAATTAGCTTTCCCGGGTTNA
                      ____________________________________________________________
consensus             ATGCTTGAATAGTTGGACTCTNATAATAACNTGCTCATCAAATTAGCTTTCCCGGGTTNA
 
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rJMSF033A11+          TACNCGCATAATTTTAATCACGTTTTGGATCCTATGCATGNTCATGGTTTAACAANGGTA
                      ____________________________________________________________
consensus             TACNCGCATAATTTTAATCACGTTTTGGATCCTATGCATGNTCATGGTTTAACAANGGTA
 
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rJMSF033A11+          NTNANNTTCGAANGNGTATGNTCNTAANNTTTTGAGCTGTGCAAAGTTCCNGAANNTNNT
                      ____________________________________________________________
consensus             NTNANNTTCGAANGNGTATGNTCNTAANNTTTTGAGCTGTGCAAAGTTCCNGAANNTNNT