Contig 014025:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007O03Sequence324000781 (6)ref|XP_009770039.1|7e-34PREDICTED: large subunit GTPase 1 homolog [Nicotiana sylvestris]694014025 (5)ref|XP_002264570.1|6e-53PREDICTED: large subunit GTPase 1 homolog [Vitis vinifera]
JMSF018H08Sequence250000781 (6)ref|XP_006487858.1|99.8PREDICTED: uncharacterized protein LOC102630795 [Citrus sinensis]746014025 (5)ref|XP_002264570.1|2e-63PREDICTED: large subunit GTPase 1 homolog [Vitis vinifera]
JMSF027C18Sequence607000781 (6)ref|XP_009770039.1|4e-62PREDICTED: large subunit GTPase 1 homolog [Nicotiana sylvestris]750014025 (5)ref|XP_002264570.1|8e-65PREDICTED: large subunit GTPase 1 homolog [Vitis vinifera]
JMSF032D24Sequence697000781 (6)ref|XP_004156028.1|6e-97PREDICTED: large subunit GTPase 1 homolog [Cucumis sativus]564014025 (5)ref|XP_009335155.1|7e-18PREDICTED: large subunit GTPase 1 homolog [Pyrus x bretschneideri]
JMSF032O08Sequence674000781 (6)ref|XP_004156028.1|4e-106PREDICTED: large subunit GTPase 1 homolog [Cucumis sativus]699014025 (5)ref|XP_002264570.1|3e-48PREDICTED: large subunit GTPase 1 homolog [Vitis vinifera]

Alignment

This contig is upended


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rJMSF018H08+                                                           AAACCGAGTTC
rJMSF027C18+                                                        GGCAAACCGAGTTC
                      ____________________________________________________________
consensus                                                           GGCAAACCGAGTTC
 
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rJMSF007O03+                                                  CAAGCCAAAGCCATATGAAC
rJMSF018H08+          CTAGAAAAGTTATAGGGGATGTCTATAAAATTTCTTTGCCCAAGCCAAAGCCATATGAAC
rJMSF027C18+          CTAGAAAAGTTATAGAGGATGTCTATAAAATTTCTTTGCCCAAGCCAAAGCCATATGAAC
                      ____________________________________________________________
consensus             CTAGAAAAGTTATAGGGGATGTCTATAAAATTTCTTTGCCCAAGCCAAAGCCATATGAAC
 
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rJMSF007O03+          CACAATCACGTCCACCTTTGGCATCAGAACTTTTGAGAGCCTATTGTGCATCCCGGGGAT
rJMSF018H08+          CACAATCACGTCCACCTTTGGCATCAGAACTTTTGAGAGCCTATTGTGCATCCCGGGGAT
rJMSF027C18+          CACAATCACGTCCACCTTTGGCATCAGAACTTTTGAGAGCCTATTGTGCATCCCGGGGAT
rJMSF032O08+                               CATCAGAACTTTTGAGAGCCTATTGTGCATCCCGGGGAT
                      ____________________________________________________________
consensus             CACAATCACGTCCACCTTTGGCATCAGAACTTTTGAGAGCCTATTGTGCATCCCGGGGAT
 
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rJMSF007O03+          ATGTTGCTGCAAGTGGACTGCCTGATGAAACTAGAGCCGCCCGCCAAATTTTGAAGGACT
rJMSF018H08+          ATGTTGCTGCAAGTGGACTGCCTGATGAAACTAGAGCCGCCCGCCAAATTTTGAAGGACT
rJMSF027C18+          ATGTTGCTGCAAGTGGACTGCCTGATGAAACTAGAGCCGCCCGCCAAATTTTGAAGGACT
rJMSF032O08+          ATGTTGCTGCAAGTGGACTGCCTGATGAAACTAGAGCCGCCCGCCAAATTTTGAAGGACT
                      ____________________________________________________________
consensus             ATGTTGCTGCAAGTGGACTGCCTGATGAAACTAGAGCCGCCCGCCAAATTTTGAAGGACT
 
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rJMSF007O03+          ATGTTGACGGGAAGCTTCCCCACTTTGAAATGCCACCTGGAATGCCGAACGAGGAAGAAG
rJMSF018H08+          ATGTTGACGGGAAGCTTCCCCACTTTGAAATGCCACCTGGAATGCCGAACGAGGAAGAAG
rJMSF027C18+          ATGTTGACGGGAAGCTTCCCCACTTTGAAATGCCACCTGGAATGCCGAACGAGGAAGAAG
rJMSF032D24+                               ACTTTGAAATGCCACCTGGAATGCCGAACGAGGAAGAAG
rJMSF032O08+          ATGTTGACGGGAAGCTTCCCCACTTTGAAATGCCACCTGGAATGCCGAACGAGGAAGAAG
                      ____________________________________________________________
consensus             ATGTTGACGGGAAGCTTCCCCACTTTGAAATGCCACCTGGAATGCCGAACGAGGAAGAAG
 
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rJMSF007O03+          ATGGTGAAGAGGACGCTGCTGATACAGATGACGACGTTGATGATGCTGGACCCAGCCTGT
rJMSF018H08+          ATGGTGAAGAGGACGCTGCTGATACAGATGACGACGTTGATGATGCTGGACCCAGCCTGT
rJMSF027C18+          ATGGTGAAGAGGACGCTGCTGATACAGATGACGACGTTGATGATGCTGGACCCAGCCTGT
rJMSF032D24+          ATGGTGAAGAGGACGCTGCTGATACAGATGACGACGTTGATGATGCTGGACCCAGCCTGT
rJMSF032O08+          ATGGTGAAGAGGACGCTGCTGATACAGATGACGACGTTGATGATGCTGGACCCAGCCTGT
                      ____________________________________________________________
consensus             ATGGTGAAGAGGACGCTGCTGATACAGATGACGACGTTGATGATGCTGGACCCAGCCTGT
 
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rJMSF007O03+          CAGACCATGATTCCTCTGATGTTGAAGACCCTTCAGTAAGTGAACTAGAAGATGCACCAA
rJMSF018H08+          CAGACCATGATTCCTCTGATGTTGAAGACCCTTCAGTAAGTGAACTAGAAGATGCACCAA
rJMSF027C18+          CAGACCATGATTCCTCTGATGTTGAAGACCCTTCAGTAAGTGAACTAGAAGATGCACCAA
rJMSF032D24+          CAGACCATGATTCCTCTGATGTTGAAGACCCTTCAGTAAGTGAACTAGAAGATGCACCAA
rJMSF032O08+          CAGACCATGATTACTCTGATGTTGAAGACCCTTCAGTAAGTGAACTAGAAGATGCACCAA
                      ____________________________________________________________
consensus             CAGACCATGATTCCTCTGATGTTGAAGACCCTTCAGTAAGTGAACTAGAAGATGCACCAA
 
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rJMSF007O03+          GCCTTGACCACATTCTGAATGATCTAAACACATTCGACATCACTAATGGGCTAGCTGCTT
rJMSF018H08+          GCCTTGACCACATTCTGAATGATCTAAACACATTCGACATCACTAATGGGCTAGCTGCTT
rJMSF027C18+          GCCTTGACCACATTCTGAATGATCTAAACACATTCGACATCACTAATGGGCTAGCTGCTT
rJMSF032D24+          GCCTTGACCACATTCTGAATGATCTAAACACATTCGACATCACTAATGGGCTAGCTGCTT
rJMSF032O08+          GCCTTGACCACATTCTGAATGATCTAAACACATTCGACATCACTAATGGGCTAGCTGCTT
                      ____________________________________________________________
consensus             GCCTTGACCACATTCTGAATGATCTAAACACATTCGACATCACTAATGGGCTAGCTGCTT
 
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rJMSF007O03+          CTAGTAAAGCAACTGTTAAAAAGAAGCCAACAAGGGCACCCCATAAACAGCATAAGAAGC
rJMSF018H08+          CTAGTAAAGCAACTGTTAAAAAGAAGCCAACAAGGGCACCCCATAAACAGCATAAGAAGC
rJMSF027C18+          CTAGTAAAGCAACTGTTAAAAAGAAGCCAACAAGGGCACCCCATAAACAGCATAAGAAGC
rJMSF032D24+          CTAGTAAAGCAACTGTTAAAAAGAAGCCAACAAGGGCACCCCATAAACAGCATAAGAAGC
rJMSF032O08+          CTAGTAAAGCAACTGTTAAAAAGAAGCCAACAAGGGCACCCCATAAACAGCATAAGAAGC
                      ____________________________________________________________
consensus             CTAGTAAAGCAACTGTTAAAAAGAAGCCAACAAGGGCACCCCATAAACAGCATAAGAAGC
 
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rJMSF007O03+          CACAGAAGAAGAAAGACCGCAGCTGGAGAGTCCAGAACGACGGCGGTGATGGCATGCCAG
rJMSF018H08+          CACAGAAGAAGAAAGACCGCAGCTGGAGAGTCCAGAACGACGGCGGTGATGGCATGCCAG
rJMSF027C18+          CACAGAAGAAGAAAGACCGCAGCTGGAGAGTCCAGAACGACGGCGGTGATGGCATGCCAG
rJMSF032D24+          CACAGAAGAAGAAAGACCGCAGCTGGAGAGTCCAGAACGACGGCGGTGATGGCATGCCAG
rJMSF032O08+          CACAGAAGAAGAAAGACCGCAGCTGGAGAGTCCAGAACGACGGCGGTGATGGCATGCTAG
                      ____________________________________________________________
consensus             CACAGAAGAAGAAAGACCGCAGCTGGAGAGTCCAGAACGACGGCGGTGATGGCATGCCAG
 
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rJMSF007O03+          CTGTAAGGGTTCTCCAAAAGCCAGTTAATACAGGCCCGTTAAACATCTGAACCTATTATC
rJMSF018H08+          CTGTAAGGGTTCTCCAAAAGCCAGTTAATACAGGCCCGTTAAACATCTGAACCTATTATC
rJMSF027C18+          CTGTAAGGGTTCTCCAAAAGCCAGTTAATACAGGCCCGTTAAACATCTGAACCTATTATC
rJMSF032D24+          CTGTAAGGGTTCTCCAAAAGCCAGTTAATACAGGCCCGTTAAACATCTGAACCTATTATC
rJMSF032O08+          CTGTAAGGGTTCTCCAAAAGCCAGTTAATACAGGCCCGTTAAACATCTGAACCTATTATC
                      ____________________________________________________________
consensus             CTGTAAGGGTTCTCCAAAAGCCAGTTAATACAGGCCCGTTAAACATCTGAACCTATTATC
 
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rJMSF007O03+          AAGAGATATTTCTTGTTGATTGAATCGAAACAAAAGAAAAACCACGTAGACCTGCTGCCG
rJMSF018H08+          AAGAGATATTTCTTGTTGATTGAATCGAAACAAAAGAAAAACCACGTAGACCTGCTGCCG
rJMSF027C18+          AAGAGATATTTCTTGTTGATTGAATCGAAACAAAAGAAAAACCACGTAGACCTGCTGCCG
rJMSF032D24+          AAGAGATATTTCTTGTTGATTGAATCGAAACAAAAGAAAAACCACGTAGACCTGCTGCCG
rJMSF032O08+          AAGAGATATTTCTTGTTGATTGAATCGAAACAAAAGAAAAACCACGTAGACCTGCTGCCG
                      ____________________________________________________________
consensus             AAGAGATATTTCTTGTTGATTGAATCGAAACAAAAGAAAAACCACGTAGACCTGCTGCCG
 
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rJMSF007O03+          CCTGTAGCAGTTGACTTCACCTGGTAGTTGACAGTTTTGTTGTAGGTCGTTTGTTTGTCA
rJMSF018H08+          CCTGTAGCAGTTGACTTCACCTGGTAGTTGACAGTTTTGTTGTAGGTCGTTTGTTTGTCA
rJMSF027C18+          CCTGTAGCAGTTGACTTCACCTGGTAGTTGACAGTTTTGTTGTAGGTCGTTTGTTTGTCA
rJMSF032D24+          CCTGTAGCAGTTGACTTCACCTGGTAGTTGACAGTTTTGTTGTAGGTCGTTTGTTTGTCA
rJMSF032O08+          CCTGTAGCAGTTGACTTCACCTGGTAGTTGACAGTTTTGTTGTAGGTCGTTTGTTTGTCA
                      ____________________________________________________________
consensus             CCTGTAGCAGTTGACTTCACCTGGTAGTTGACAGTTTTGTTGTAGGTCGTTTGTTTGTCA
 
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rJMSF007O03+          TCATATTTATGATT                                              
rJMSF018H08+          TCATATTTATGATT                                              
rJMSF027C18+          TCATATTTATGATT                                              
rJMSF032D24+          TCATATTTATGATTTGTTAAGTGAAATGAATAGATAATACAATGC               
rJMSF032O08+          TCATATTTATGATTTGTTAAGTGAAATGAATAGATAATACAATGCTTTCAGAGCAATCTT
                      ____________________________________________________________
consensus             TCATATTTATGATTTGTTAAGTGAAATGAATAGATAATACAATGCTTTCAGAGCAATCTT