Contig 014024:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005D21Sequence466014024 (16)ref|XP_010265550.1|2e-39PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Nelumbo nucifer693014024 (16)ref|XP_006427956.1|9e-97hypothetical protein CICLE_v10026373mg [Citrus clementina] ref|XP_006464501.1| P
JMFF022D02Sequence514014024 (16)ref|XP_009336369.1|1e-46PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Pyrus x bretsch741014024 (16)ref|XP_006359022.1|2e-75PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial-like [Solanum tu
JMFF031I16Sequence607014024 (16)ref|XP_006359022.1|9e-73PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial-like [Solanum tu704014024 (16)ref|XP_006359022.1|3e-72PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial-like [Solanum tu
JMFF032J03Sequence561014024 (16)ref|XP_009336369.1|2e-55PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Pyrus x bretsch747014024 (16)ref|XP_006427956.1|9e-81hypothetical protein CICLE_v10026373mg [Citrus clementina] ref|XP_006464501.1| P
JMSF021P23Sequence639014024 (16)ref|XP_008354618.1|2e-68PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Malus domestica750014024 (16)ref|XP_006427956.1|3e-82hypothetical protein CICLE_v10026373mg [Citrus clementina] ref|XP_006464501.1| P
JMSF025K02Sequence676014024 (16)ref|XP_009591524.1|3e-57PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Nicotiana tomen765014024 (16)ref|XP_006359022.1|2e-77PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial-like [Solanum tu
JMSF032N05Sequence677014024 (16)ref|XP_009591524.1|1e-78PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Nicotiana tomen693014024 (16)ref|XP_009786800.1|9e-65PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Nicotiana sylve
JMSF047N16Sequence669014024 (16)ref|XP_009591524.1|9e-78PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Nicotiana tomen746014024 (16)ref|XP_006427956.1|2e-76hypothetical protein CICLE_v10026373mg [Citrus clementina] ref|XP_006464501.1| P

Alignment

This contig is upended


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JMSF021P23-                                    GAGAAAGGGCAAAGGAAAGTGTTTCAGCTCCGACG
JMFF022D02-                                              AAAGTAAAGTGTTTCAGCTCCGACG
JMFF005D21-                                       AAAGGGCAAAGGAAAGTGTTTCAGCTCCGACG
JMFF032J03-                                       AAAGGGCAAAGGAAAGTGTTTCAGCTCCGACG
JMSF047N16-                                    GAGAAAGGGCAAAGGAAAGTGTTTCAGCTCCGACG
JMSF032N05-                                    GAGAAAGGGCAAAGGAAAGTGTTTCAGCTCCGACG
JMSF025K02-                                    GAGAAAGGGCAAAGGAAAGTGTTTCAGCTCCGACG
                      ____________________________________________________________
consensus                                      GAGAAAGGGCAAAGGAAAGTGTTTCAGCTCCGACG
 
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JMSF021P23-           CAGAGAGTGATAGACGACGATCCTAAGCAGCTTTCGTTCTTTCGCAATGGCTTTCGCTTC
JMFF022D02-           CAGAGAGTGATAGACGACGATCCTAAGCAGCTTTCGTTCTTTCGCAATGGCTTTCGCTTC
JMFF005D21-           CAGAGAGTGATAGACGACGATCCTAAGCAGCTTTCGTTCTTTCGCAATGGCTTTCGCTTC
JMFF032J03-           CAGAGAGTGATAGACGACGATCCTAAGCAGCTTTCGTTCTTTCGCAATGGCTTTCGCTTC
JMSF047N16-           CAGAGAGTGATAGACGACGATCCTAAGCAGCTTTCGTTCTTTCGCAATGGCTTTCGCTTC
JMSF032N05-           CAGAGAGTGATAGACGACGATCCTAAGCAGCTTTCGTTCTTTCGCAATGGCTTTCGCTTC
JMSF025K02-           CAGAGAGTGATAGACGACGATCCTAAGCAGCTTTCGTTCTTTCGCAATGGCTTTCGCTTC
                      ____________________________________________________________
consensus             CAGAGAGTGATAGACGACGATCCTAAGCAGCTTTCGTTCTTTCGCAATGGCTTTCGCTTC
 
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JMSF021P23-           TCGATTCCTTTCCAGATCTAGCCGTCAGTTATGTAGTAGCCAGATCATCACGCGGCCAGA
JMFF022D02-           TCGATTCCTTTCCAGATCTAGCCGTCAGTTATGTAGTAGCCAGATCATCACGCGGCCAGA
JMFF005D21-           TCGATTCCTTTCCAGATCTAGCCGTCAGTTATGTAGTAGCCAGATCATCACGCGGCCAGA
JMFF032J03-           TCGATTCCTTTCCAGATCTAGCCGTCAGTTATGTAGTAGCCAGATCATCACGCGGCCAGA
JMSF047N16-           TCGATTCCTTTCCAGATCTAGCCGTCAGTTATGTAGTAGCCAGATCATCACGCGGCCAGA
JMSF032N05-           TCGATTCCTTTCCAGATCTAGCCGTCAGTTATGTAGTAGCCAGATCATCACGCGGCCAGA
JMSF025K02-           TCGATTCCTTTCCAGATCTAGCCGTCAGTTATGTAGTAGCCAGATCATCACGCGGCCAGA
                      ____________________________________________________________
consensus             TCGATTCCTTTCCAGATCTAGCCGTCAGTTATGTAGTAGCCAGATCATCACGCGGCCAGA
 
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JMSF021P23-           TAGTGCCATTCCAATTCGTTCCTTTGCCAAAGGAGCTGGTGCTCCAGCAGCACTTAA-GG
JMFF022D02-           TAGTGCCATTCCAATTCGTTCCTTTGCCAAAGGAGCTGGTGCTCCAGCAGCACTTAAGGG
JMFF005D21-           TAGTGCCATTCCAATTCGTTCCTTTGCCAAAGGAGCTGGTGCTCCAGCAGCACTTAAGGG
JMFF032J03-           TAGTGCCATTCCAATTCGTTCCTTTGCCAAAGGAGCTGGTGCTCCAGCAGCACTTAAGGG
JMSF047N16-           TAGTGCCATTCCAATTCGTTCCTTTGCCAAAGGAGCTGGTGCTCCAGCAGCACTTAAGGG
JMSF032N05-           TAGTGCCATTCCAATTCGTTCCTTTGCCAAAGGAGCTGGTGCTCCAGCAGCACTTAAGGG
JMSF025K02-           TAGTGCCATTCCAATTCGTTCCTTTGCCAAAGGAGCTGGTGCTCCAGCAGCACTTAAGGG
                      ____________________________________________________________
consensus             TAGTGCCATTCCAATTCGTTCCTTTGCCAAAGGAGCTGGTGCTCCAGCAGCACTTAAGGG
 
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JMSF021P23-           CGACGAAATGTTGAAGAATGTCTTTCTTGAGGTCAAGAAGAAATTTGAGACTGCAATTGG
JMFF022D02-           CGACGAAATGTTGAAGAATGTCTTTCTTGAGGTCAAGAAGAAATTTGAGACTGCAATTGG
JMFF005D21-           CGACGAAATGTTGAAGAATGTCTTTCTTGAGGTCAAGAAGAAATTTGAGACTGCAATTGG
JMFF032J03-           CGACGAAATGTTGAAGAATGTCTTTCTTGAGGTCAAGAAGAAATTTGAGACTGCAATTGG
JMSF047N16-           CGACGAAATGTTGAAGAATGTCTTTCTTGAGGTCAAGAAGAAATTTGAGACTGCAATTGG
JMSF032N05-           CGACGAAATGTTGAAGAATGTCTTTCTTGAGGTCAAGAAGAAATTTGAGACTGCAATTGG
JMSF025K02-           CGACGAAATGTTGAAGAATGTCTTTCTTGAGGTCAAGAAGAAATTTGAGACTGCAATTGG
rJMFF005D21+                                           CAAGAAGAAATTTGAGACTGCAATTGG
                      ____________________________________________________________
consensus             CGACGAAATGTTGAAGAATGTCTTTCTTGAGGTCAAGAAGAAATTTGAGACTGCAATTGG
 
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JMSF021P23-           GGTCCTCCGAAAGGAGAAGATCACCATAGATCCTGAAGACACTGCTGCTGTGACTCAATA
JMFF022D02-           GGTCCTCCGAAAGGAGAAGATCACCATAGATCCTGAAGACACTGCTGCTGTGACTCAATA
JMFF005D21-           GGTCCTCCGAAAGGAGAAGATCACCATAGATCCTGAAGACACTGCTGCTGTGACTCAATA
JMFF032J03-           GGTCCTCCGAAAGGAGAAGATCACCATAGATCCTGAAGACACTGCTGCTGTGACTCAATA
JMSF047N16-           GGTCCTCCGAAAGGAGAAGATCACCATAGATCCTGAAGACACTGCTGCTGTGACTCAATA
JMSF032N05-           GGTCCTCCGAAAGGAGAAGATCACCATAGATCCTGAAGACACTGCTGCTGTGACTCAATA
JMSF025K02-           GGTCCTCCGAAAGGAGAAGATCACCATAGATCCTGAAGACACTGCTGCTGTGACTCA--A
rJMFF005D21+          GGTCCTCCGAAAGGAGAAGATCACCATAGATCCTGAAGACACTGCTGCTGTGACTCAATA
rJMSF021P23+                                              AGACACTGCTGCTGTGACTCAATA
rJMSF025K02+                               CACCATAGATCCTGAAGACACTGCTGCTGTGACTCA--A
rJMFF032J03+                                                        GCTGTGACTCAATA
                      ____________________________________________________________
consensus             GGTCCTCCGAAAGGAGAAGATCACCATAGATCCTGAAGACACTGCTGCTGTGACTCAATA
 
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JMSF021P23-           TGCCAAAGTCATGAAGACTGTAAGGGAAAAGGCAAATCTCCAATCAGAGTCTGAAAAGAT
JMFF022D02-           TGCCAAAGTCATGAAGACTGTAAGGGAAAAGGCAAATCTCCAATCAGAGTCTGAAAAGAT
JMFF005D21-           TGCCAAAGTCATGAAGACTGTAAGGGAAAAGGCAAATCTCCAATCAGAGTCTGAAAAGAT
JMFF032J03-           TGCCAAAGTCATGAAGACTGTAAGGGAAAAGGCAAATCTCCAATCAGAGTCTGAAAAGAT
JMSF047N16-           TGCCAAAGTCATGAAGACTGTAAGGGAAAAGGCAAATCTCCAATCAGAGTCTGAAAAGAT
JMSF032N05-           TGCCAAAGTCATGAAGACTGTAAGGGAAAAGGCAAATCTCCAATCAGAGTCTGAAAAGAT
JMSF025K02-           TGCCAAAGTCATGAAGACTGTAAGGGAAAAGGCAAATCTCCAATCAGAGTCTGAAAAGAT
rJMFF005D21+          TGCCAAAGTCATGAAGACTGTAAGGGAAAAGGCAAATCTCCAATCAGAGTCTGAAAAGAT
rJMSF021P23+          TGCCAAAGTCATGAAGACTGTAAGGGAAAAGGCAAATCTCCAATCAGAGTCTGAAAAGAT
JMFF031I16-                                  GGGAAAAGGCAAATCTCCAATCAGAGTCTGAAAAGAT
rJMSF025K02+          TGCCAAAGTCATGAAGACTGTAAGGGAAAAGGCAAATCTCCAATCAGAGTCTGAAAAGAT
rJMFF031I16+                                 GGGAAAAGGCAAATCTCCAATCAGAGTCTGAAAAGAT
rJMFF032J03+          TGCCAAAGTCATGAAGACTGTAAGGGAAAAGGCAAATCTCCAATCAGAGTCTGAAAAGAT
rJMFF022D02+               AAGTCATGAAGACTGTAAGGGAAAAGGCAAATNTCCAATCAGAGTCTGAAAAGAT
rJMSF047N16+               AAGTCATGAAGACTGTAAGGGAAAAGGCAAATCTCCAATCAGAGTCTGAAAAGAT
                      ____________________________________________________________
consensus             TGCCAAAGTCATGAAGACTGTAAGGGAAAAGGCAAATCTCCAATCAGAGTCTGAAAAGAT
 
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JMSF021P23-           CAAAGAAGCTATTGATACACAAACAAATGAGATTCCAGATGCTCGGACTTATCTGTTGAC
JMFF022D02-           CAAAGAAGCTATTGATACACAAACAAATGAGATTCCAGATGCTCGGACTTATCTGTTGAC
JMFF005D21-           CAAAGAAGCTATTGATACACAAACAAATGAGATTCCAGATGCTCGGACTTATCTGTTGAC
JMFF032J03-           CAAAGAAGCTATTGATACACAAACAAATGAGATTCCAGATGCTCGGACTTATCTGTTGAC
JMSF047N16-           CAAAGAAGCTATTGATACACAAACAAATGAGATTCCAGATGCTCGGACTTATCTGTTGAC
JMSF032N05-           CAAAGAAGCTATTGATACACAAACAAATGAGATTCCAGATGCTCGGACTTATCTGTTGAC
JMSF025K02-           CAAAGAAGCTATTGATACACAAACAAATGAGATTCCAGATGCTCGGACTTATCTGTTGAC
rJMFF005D21+          CAAAGAAGCTATTGATACACAAACAAATGAGATTCCAGATGCTCGGACTTATCTGTTGAC
rJMSF021P23+          CAAAGAAGCTATTGATACACAAACAAATGAGATTCCAGATGCTCGGACTTATCTGTTGAC
JMFF031I16-           CAAAGAAGCTATTGATACACAAACAAATGAGATTCCAGATGCTCGGACTTATCTGTTGAC
rJMSF025K02+          CAAAGAAGCTATTGATACACAAACAAATGAGATTCCAGATGCTCGGACTTATCTGTTGAC
rJMFF031I16+          CAAAGAAGCTATTGATACACAAACAAATGAGATTCCAGATGCTCGGACTTATCTGTTGAC
rJMFF032J03+          CAAAGAAGCTATTGATACACAAACAAATGAGATTCCAGATGCTCGGACTTATCTGTTGAC
rJMFF022D02+          CAAAGAAGCTATTGATACACAAACAAATGAGATTCCAGATGCTCGGACTTATCTGTTGAC
rJMSF047N16+          CAANGAAGCTATTGATACACAAACAAATGAGATTCCAGATGCTCGGACTTATCTGTTGAC
rJMSF032N05+                                     TGAGATTCCAGATGCTCGGACTTATCTGTTGAC
                      ____________________________________________________________
consensus             CAAAGAAGCTATTGATACACAAACAAATGAGATTCCAGATGCTCGGACTTATCTGTTGAC
 
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JMSF021P23-           ACTGAAAGAGATAAGGATTAAGAGTGGCCTTCCTGATGAGCATGGCATTGAGGAAAAGAT
JMFF022D02-           ACTGAAAGAGATAAGGATTAAGAGTGGCCTTCCTGATGAGCGTGGCATTGAGGAAAAGAT
JMFF005D21-           ACTGAAAGAGATAA                                              
JMFF032J03-           ACTGAAAGAGATAAGGATTAAGAGTGGCCTTCCTGATGAGCATGGCATTGAGGAAAAGAT
JMSF047N16-           ACTGAAAGAGATAAGGATTAAGAGTGGCCTTCCTGATGAGCATGGCATTGAGGAAAAGAT
JMSF032N05-           ACTGAAAGAGATAAGGATTAAGAGTGGCCTTCCTGATGAGCATGGCATTGAGGAAAAGAT
JMSF025K02-           ACTGAAAGAGATAAGGATTAAGAGTGGCCTTCCTGATGAGCATGGCATTGAGGAAAAGAT
rJMFF005D21+          ACTGAAAGAGATAAGGATTAAGAGTGGCCTTCCTGATGAGCATGGCATTGAGGAAAAGAT
rJMSF021P23+          ACTGAAAGAGATAAGGATTAAGAGTGGCCTTCCTGATGAGCATGGCATTGAGGAAAAGAT
JMFF031I16-           ACTGAAAGAGATAAGGATTAAGAGTGGCCTTCCTGATGAGCATGGCATTGAGGAAAAGAT
rJMSF025K02+          ACTGAAAGAGATAAGGATTAAGAGTGGCCTTCCTGATGAGCATGGCATTGAGGAAAAGAT
rJMFF031I16+          ACTGAAAGAGATAAGGATTAAGAGTGGCCTTCCTGATGAGCATGGCATTGAGGAAAAGAT
rJMFF032J03+          ACTGAAAGAGATAAGGATTAAGAGTGGCCTTCCTGATGAGCATGGCATTGAGGAAAAGAT
rJMFF022D02+          ACTGAAAGAGATAAGGATTAAGAGTGGCCTTCCTGATGAGCGTGGCATTGAGGAAAAGAT
rJMSF047N16+          ACTGAAAGAGATAAGGATTAAGAGTGGCCTTCCTGATGAGCATGGCATTGAGGAAAAGAT
rJMSF032N05+          ACTGAAAGAGATAAGGATTAAGAGTGGCCTTCCTGATGAGCATGGCATTGAGGAAAAGAT
                      ____________________________________________________________
consensus             ACTGAAAGAGATAAGGATTAAGAGTGGCCTTCCTGATGAGCATGGCATTGAGGAAAAGAT
 
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JMSF021P23-           GATGAATGCTTTGGATAAGGTAGAGAAAGAACTCAAGAAGCCACTACTGAGGAATGACAA
JMFF022D02-           GATGAATGC                                                   
JMFF032J03-           GATGAATGCTTTGGATAAGGTAGAGAAAGAACTCAAGAAGCCACTACTG           
JMSF047N16-           GATGAATGCTTTGGATAAGGTAGAGAAAGAACTCAAGAAGCCACTACTGAGGAATGACAA
JMSF032N05-           GATGAATGCTTTGGATAAGGTAGAGAAAGAACTCAAGAAGCCACTACTGAGGAATGACAA
JMSF025K02-           GATGAATGCTTTGGATAAGGTAGAGAAAGAACTCAAGAAGCCACTACTGAGGAATGACAA
rJMFF005D21+          GATGAATGCTTTGGATAAGGTAGAGAAAGAACTCAAGAAGCCACTACTGAGGAATGACAA
rJMSF021P23+          GATGAATGCTTTGGATAAGGTAGAGAAAGAACTCAAGAAGCCACTACTGAGGAATGACAA
JMFF031I16-           GATGAATGCTTTGGATAAGGTAGAGAAAGAACTCAAGAAGCCACTACTGAGGAATGACAA
rJMSF025K02+          GATGAATGCTTTGGATAAGGTAGAGAAAGAACTCAAGAAGCCACTACTGAGGAATGACAA
rJMFF031I16+          GATGAATGCTTTGGATAAGGTAGAGAAAGAACTCAAGAAGCCACTACTGAGGAATGACAA
rJMFF032J03+          GATGAATGCTTTGGATAAGGTAGAGAAAGAACTCAAGAAGCCACTACTGAGGAATGACAA
rJMFF022D02+          GATGAATGCTTTGGATAAGGTAGAGAAAGAACTCAAGAAGCCACTACTGAGGAATGACAA
rJMSF047N16+          GATGAATGCTTTGGATAAGGTAGAGAAAGAACTCAAGAAGCCACTACTGAGGAATGACAA
rJMSF032N05+          GATGAATGCTTTGGATAAGGTAGAGAAAGAACTCAAGAAGCCACTACTGAGGAATGACAA
                      ____________________________________________________________
consensus             GATGAATGCTTTGGATAAGGTAGAGAAAGAACTCAAGAAGCCACTACTGAGGAATGACAA
 
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JMSF021P23-           AAAGGGAATCGCACTCCTCACAGCAGAGTTCGATAAGATCAACCAGAAAATTGGCATCAG
JMSF047N16-           AAAGGGAATCGCACTCCTCACAGCAGAGTTCGATAAGATCAACCAGAAAATTGGCATCAG
JMSF032N05-           AAAGGGAATCGCACTCCTCACAGCAGAGTTCGATAAGATCAACCAGAAAATTGGCATCAG
JMSF025K02-           AAAGGGAATCGCACTCCTCACAGCAGAGTTCGATAAGATCAACCAGAAAATTGGCATCAG
rJMFF005D21+          AAAGGGAATCGCACTCCTCACAGCAGAGTTCGATAAGATCAACCAGAAAATTGGCATCAG
rJMSF021P23+          AAAGGGAATCGCACTCCTCACAGCAGAGTTCGATAAGATCAACCAGAAAATTGGCATCAG
JMFF031I16-           AAAGGGAATCGCACTCCTCACAGCAGAGTTCGATAAGATCAACCAGAAAATTGGCATCAG
rJMSF025K02+          AAAGGGAATCGCACTCCTCACAGCAGAGTTCGATAAGATCAACCAGAAAATTGGCATCAG
rJMFF031I16+          AAAGGGAATCGCACTCCTCACAGCAGAGTTCGATAAGATCAACCAGAAAATTGGCATCAG
rJMFF032J03+          AAAGGGAATCGCACTCCTCACAGCAGAGTTCGATAAGATCAACCAGAAAATTGGCATCAG
rJMFF022D02+          AAAGGGAATCGCACTCCTCACAGCAGAGTTCGATAAGATCAACCAGAAAATTGGCATCAG
rJMSF047N16+          AAAGGGAATCGCACTCCTCACAGCAGAGTTCGATAAGATCAACCAGAAAATTGGCATCAG
rJMSF032N05+          AAAGGGAATCGCACTCCTCACAGCAGAGTTCGATAAGATCAACCAGAAAATTGGCATCAG
                      ____________________________________________________________
consensus             AAAGGGAATCGCACTCCTCACAGCAGAGTTCGATAAGATCAACCAGAAAATTGGCATCAG
 
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JMSF021P23-           CCGAG                                                       
JMSF047N16-           CCGAGAAAACCTGCCCAAGTATGAAGAACAATTG                          
JMSF032N05-           CCGAGAAAACCTGCCCAAGTATGAAGAACAATTGGAAATGAA                  
JMSF025K02-           CCGAGAAAACCTGCCCAAGTATGAAGAACAATTGGAAATGAAG                 
rJMFF005D21+          CCGAGAAAACCTGCCCAAGTATGAAGAACAATTGGAAATGAAGGTTGCTAAAGCTCAATT
rJMSF021P23+          CCGAGAAAACCTGCCCAAGTATGAAGAACAATTGGAAATGAAGGTTGCTAAAGCTCAATT
JMFF031I16-           CCGAGAAAACCTGCCCAAGTATGAAGAACAATTGGAAATGAAGGTTGCTAAAGCTCAATT
rJMSF025K02+          CCGAGAAAACCTGCCCAAGTATGAAGAACAATTGGAAATGAAGGTTGCTAAAGCTCAATT
rJMFF031I16+          CCGAGAAAACCTGCCCAAGTATGAAGAACAATTGGAAATGAAGGTTGCTAAAGCTCAATT
rJMFF032J03+          CCGAGAAAACCTGCCCAAGTATGAAGAACAATTGGAAATGAAGGTTGCTAAAGCTCAATT
rJMFF022D02+          CCGAGAAAACCTGCCCAAGTATGAAGAACAATTGGAAATGAAGGTTGCTAAAGCTCAATT
rJMSF047N16+          CCGAGAAAACCTGCCCAAGTATGAAGAACAATTGGAAATGAAGGTTGCTAAAGCTCAATT
rJMSF032N05+          CCGAGAAAACCTGCCCAAGTATGAAGAACAATTGGAAATGAAGGTTGCTAAAGCTCAATT
                      ____________________________________________________________
consensus             CCGAGAAAACCTGCCCAAGTATGAAGAACAATTGGAAATGAAGGTTGCTAAAGCTCAATT
 
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rJMFF005D21+          AGAAGAATTGAAAAAGGATGCCCTTGAGGCAATGGAAACTCAGAAGAAGAGGGAGGAGTT
rJMSF021P23+          AGAAGAATTGAAAAAGGATGCCCTTGAGGCAATGGAAACTCAGAAGAAGAGGGAGGAGTT
JMFF031I16-           AGAAGAATTGAAAAAGGATGCCCTTGAGGCAATGGAAACTCAGAAGAAGAGGGAGGAGTT
rJMSF025K02+          AGAAGAATTGAAAAAGGATGCCCTTGAGGCAATGGAAACTCAGAAGAAGAGGGAGGAGTT
rJMFF031I16+          AGAAGAATTGAAAAAGGATGCCCTTGAGGCAATGGAAACTCAGAAGAAGAGGGAGGAGTT
rJMFF032J03+          AGAAGAATTGAAAAAGGATGCCCTTGAGGCAATGGAAACTCAGAAGAAGAGGGAGGAGTT
rJMFF022D02+          AGAAGAATTGAAAAAGGATGCCCTTGAGGCAATGGAAACTCAGAAGAAGAGGGAGGAGTT
rJMSF047N16+          AGAAGAATTGAAAAAGGATGCCCTTGAGGCAATGGAAACTCAGAAGAAGAGGGAGGAGTT
rJMSF032N05+          AGAAGAATTGAAAAAGGATGCCCTTGAGGCAATGGAAACTCAGAAGAAGAGGGAGGAGTT
                      ____________________________________________________________
consensus             AGAAGAATTGAAAAAGGATGCCCTTGAGGCAATGGAAACTCAGAAGAAGAGGGAGGAGTT
 
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rJMFF005D21+          CAATGATGAGGAAATGCCTGAAGTGAAGTCTTTGGACATTAGAAACTTTCTCTAAGAACA
rJMSF021P23+          CAATGATGAGGAAATGCCTGAAGTGAAGTCTTTGGACATTAGAAACTTTCTCTAAGAACA
JMFF031I16-           CAATGATGAGGAAATGCCTGAAGTGAAGTCTTTGGACATTAGAAACTTTCTCTAAGAACA
rJMSF025K02+          CAATGATGAGGAAATGCCTGAAGTGAAGTCTTTGGACATTAGAAACTTTCTCTAAGAACA
rJMFF031I16+          CAATGATGAGGAAATGCCTGAAGTGAAGTCTTTGGACATTAGAAACTTTCTCTAAGAACA
rJMFF032J03+          CAATGATGAGGAAATGCCTGAAGTGAAGTCTTTGGACATTAGAAACTTTCTCTAAGAACA
rJMFF022D02+          CAATGATGAGGAAATGCCTGAAGTGAAGTCTTTGGACATTAGAAACTTTCTCTAAGAACA
rJMSF047N16+          CAATGATGAGGAAATGCCTGAAGTGAAGTCTTTGGACATTAGAAACTTTCTCTAAGAACA
rJMSF032N05+          CAATGATGAGGAAATGCCTGAAGTGAAGTCTTTGGACATTAGAAACTTTCTCTAAGAACA
                      ____________________________________________________________
consensus             CAATGATGAGGAAATGCCTGAAGTGAAGTCTTTGGACATTAGAAACTTTCTCTAAGAACA
 
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rJMFF005D21+          TTTGGTGGAAGACTTTTTCTTTGTGCTTTTCTTTCACCTTGGCATAATGAGTTCACAAGT
rJMSF021P23+          TTTGGTGGAAGACTTTTTCTTTGTGCTTTTCTTTCACCTTGGCATAATGAGTTCACAAGT
JMFF031I16-           TTTGGTGGAAGACTTTTTCTTTGTGCTTTTCTTTCACCTTGGCATAATGAGTTCACAAGT
rJMSF025K02+          TTTGGTGGAAGACTTTTTCTTTGTGCTTTTCTTTCACCTTGGCATAATGAGTTCACAAGT
rJMFF031I16+          TTTGGTGGAAGACTTTTTCTTTGTGCTTTTCTTTCACCTTGGCATAATGAGTTCACAAGT
rJMFF032J03+          TTTGGTGGAAGACTTTTTCTTTGTGCTTTTCTTTCACCTTGGCATAATGAGTTCACAAGT
rJMFF022D02+          TTTGGTGGAAGACTTTTTCTTTGTGCTTTTCTTTCACCTTGGCATAATGAGTTCACAAGT
rJMSF047N16+          TTTGGTGGAAGACTTTTTCTTTGTGCTTTTCTTTCACCTTGGCATAATGAGTTCACAAGT
rJMSF032N05+          TTTGGTGGAAGACTTTTTCTTTGTGCTTTTCTTTCACCTTGGCATAATGAGTTCACAAGT
                      ____________________________________________________________
consensus             TTTGGTGGAAGACTTTTTCTTTGTGCTTTTCTTTCACCTTGGCATAATGAGTTCACAAGT
 
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rJMFF005D21+          GACCTCTGCTACATTTGAAACAATACCATCCTGCTGATATGTTTTCAGGCGCTGGATTTT
rJMSF021P23+          GACCTCTGCTACATTTGAAACAATACCATCCTGCTGATATGTTTTCAGGCGCTGGATTTT
JMFF031I16-           GACCTCTGCTACATTTGAAACAATACCATCCTGCTGATATGTTTTCAGGCGCTGGATTTT
rJMSF025K02+          GACCTCTGCTACATTTGAAACAATACCATCCTGCTGATATGTTTTCAGGCGCTGGATTTT
rJMFF031I16+          GACCTCTGCTACATTTGAAACAATACCATCCTGCTGATATGTTTTCAGGCGCTGGATTTT
rJMFF032J03+          GACCTCTGCTACATTTGAAACAATACCATCCTGCTGATATGTTTTCAGGCGCTGGATTTT
rJMFF022D02+          GACCTCTGCTACATTTGAAACAATACCATCCTGCTGATATGTTTTCAGGTGCTGGATTTT
rJMSF047N16+          GACCTCTGCTACATTTGAAACAATACCATCCTGCTGATATGTTTTCAGGCGCTGGATTTT
rJMSF032N05+          GACCTCTGCTACATTTGAAACAATACCATCCTGCTGATATGTTTTCAGGCGCTGGATTTT
                      ____________________________________________________________
consensus             GACCTCTGCTACATTTGAAACAATACCATCCTGCTGATATGTTTTCAGGCGCTGGATTTT
 
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rJMFF005D21+          TTTTTA                                                      
rJMSF021P23+          TTTTTATTTTTTTAAAATAAAAGTAATGACCAGGGAATTAAATGCTATATGTGTTTTAGT
JMFF031I16-           TTTTTATTTTTTTAAAATAAAAGTAATGAC                              
rJMSF025K02+          TTTTTATTTTTTTAAAATAAAAGTAATGACCAGGGAATTAAATGCTATATGTGTTTTAGT
rJMFF031I16+          TTTTTATTTTTTTAAAATAAAAGTAATGACCAGGGAATTAAATGCTATATGTGTTTTAGT
rJMFF032J03+          TTTTTATTTTTTTAAAATAAAAGTAATGACCAGGGAATTAAATGCTATATGTGTTTTAGT
rJMFF022D02+          TTTTTATTTTTTTAAAATAAAAGTAATGACCAGGGAATTAAATGCTATATGTGTTTTAGT
rJMSF047N16+          TTTTTATTTTTTTAAAATAAAAGTAATGACCAGGGAATTAAATGCTATATGTGTTTTAGT
rJMSF032N05+          TTTTTATTTTTTTAAAATAAAAGTAATGACCAGGGAATTAAATGCTATATGTGTTTTAGT
                      ____________________________________________________________
consensus             TTTTTATTTTTTTAAAATAAAAGTAATGACCAGGGAATTAAATGCTATATGTGTTTTAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF021P23+          CCAGAGAAGAGAATATGCNTNTATGCTGCCTGCATNTGGT                    
rJMSF025K02+          CCAGAGAAGAGAATATGCTTATATGCTGCCTGCATTTGGT                    
rJMFF031I16+          CCAGAGAAGAGAATATGCTTATATGCTGCCTGCATTTGGTCAGTGGTTTTGTAATTGAAA
rJMFF032J03+          CCAGAGAAGAGAATATGCTTATATGCTGCCTGCATTTGGTCAGTGGTTTTGTAATTGAAA
rJMFF022D02+          CCAGAGAAGAGAATATGCTTATATGCTGCCTGCATTTGGTCAGTGGTTTTGTAATTGAAA
rJMSF047N16+          CCAGAGAAGAGAATATGCTTATATGCTGCCTGCATTTGGTCAGTGGTTTTGTAATTGAAA
rJMSF032N05+          CCAGAGAAGAGAATATGCTTATATGCTGCCTGCATTTGGTCAGTGGTTTTGTAATTGAAA
                      ____________________________________________________________
consensus             CCAGAGAAGAGAATATGCTTATATGCTGCCTGCATTTGGTCAGTGGTTTTGTAATTGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF031I16+          TGCAA                                                       
rJMFF032J03+          TGCAATTTAACCT                                               
rJMFF022D02+          TGCAATTTAACCTTTTGATGCTACGA                                  
rJMSF047N16+          TGCAATTTAACCTTTTGATGCTACGA                                  
rJMSF032N05+          TGCAATTTAACCTTTTGATGCTACGAAATTTCAATCNATTCTGNTGTGTCAGNTAGGGNA
                      ____________________________________________________________
consensus             TGCAATTTAACCTTTTGATGCTACGAAATTTCAATCNATTCTGNTGTGTCAGNTAGGGNA