| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF014L18 | Sequence | 534 | 014017 (7) | emb|CDP20377.1| | 2e-77 | unnamed protein product [Coffea canephora] | 709 | 014017 (7) | ref|XP_009624465.1| | 2e-104 | PREDICTED: mitogen-activated protein kinase homolog MMK2, partial [Nicotiana to |
| JMSF019L04 | Sequence | 588 | 014017 (7) | ref|XP_009624465.1| | 2e-96 | PREDICTED: mitogen-activated protein kinase homolog MMK2, partial [Nicotiana to | |||||
| JMSF023F07 | Sequence | 666 | 014017 (7) | emb|CDP20377.1| | 2e-141 | unnamed protein product [Coffea canephora] | 814 | 014017 (7) | ref|XP_009624465.1| | 4e-122 | PREDICTED: mitogen-activated protein kinase homolog MMK2, partial [Nicotiana to |
| JMSF031F06 | Sequence | 680 | 014017 (7) | emb|CDP20377.1| | 3e-103 | unnamed protein product [Coffea canephora] | 757 | 014017 (7) | ref|XP_009624465.1| | 1e-95 | PREDICTED: mitogen-activated protein kinase homolog MMK2, partial [Nicotiana to |
This contig is upended
. : . : . : . : . : . :
JMSF031F06- GGAGAGAAAGAAATGT
____________________________________________________________
consensus GGAGAGAAAGAAATGT
. : . : . : . : . : . :
JMFF014L18- GTCGTCTGGGTCGTCTTCCTGCAACGCTACCGACAGAG
JMSF031F06- CAAAAAGCTCACCCTCGACTCAGTCGTCTGGGTCGTCTTCCTGCAACGCTACCGACAGAG
____________________________________________________________
consensus CAAAAAGCTCACCCTCGACTCAGTCGTCTGGGTCGTCTTCCTGCAACGCTACCGACAGAG
. : . : . : . : . : . :
JMFF014L18- ACAAAGCTCCGGGACTTGCGCAAGATTGAGTTTTTTGAAGTGGGATTTTTTCTTAAATTT
JMSF031F06- ACAAAGCTCCGGGACTTGCGCAAGATTGAGTTTTTTGAAGTGGGATTTTTTCTTAAATTT
____________________________________________________________
consensus ACAAAGCTCCGGGACTTGCGCAAGATTGAGTTTTTTGAAGTGGGATTTTTTCTTAAATTT
. : . : . : . : . : . :
JMFF014L18- TGTCGATTCTGATTGATATGTCTGTGGAGTCGAGCTCCGTTGCAGCTGATCATGGCGGCC
JMSF031F06- TGTCGATTCTGATTGATATGTCTGTGGAGTCGAGCTCCGTTGCAGCTGATCATGGCGGCC
JMSF023F07- GTGGAGTCGAGCTCCGTTGCAGCTGATCATGGCGGCC
____________________________________________________________
consensus TGTCGATTCTGATTGATATGTCTGTGGAGTCGAGCTCCGTTGCAGCTGATCATGGCGGCC
. : . : . : . : . : . :
JMFF014L18- AAGGCCATGGCCATACCAACTTCAGGGGAGTACCTACTCACGGCGGCCGCTATGTGCAGT
JMSF031F06- AAGGCCATGGCCATACCAACTTCAGGGGAGTACCTACTCACGGCGGCCGCTATGTGCAGT
JMSF023F07- AAGGCCATGGCCATACCAACTTCAGGGGAGTACCTACTCACGGCGGCCGCTATGTGCAGT
____________________________________________________________
consensus AAGGCCATGGCCATACCAACTTCAGGGGAGTACCTACTCACGGCGGCCGCTATGTGCAGT
. : . : . : . : . : . :
JMFF014L18- ACAATGTATACGGCAACCTTTTCGAAGTTTCCAGGAAGTATGTGCCCATCAGGCCAGTCG
JMSF031F06- ACAATGTATACGGCAACCTTTTCGAAGTTTCCAGGAAGTATGTGCCCATCAGGCCAGTCG
JMSF023F07- ACAATGTATACGGCAACCTTTTCGAAGTTTCCAGGAAGTATGTGCCCATCAGGCCAGTCG
____________________________________________________________
consensus ACAATGTATACGGCAACCTTTTCGAAGTTTCCAGGAAGTATGTGCCCATCAGGCCAGTCG
. : . : . : . : . : . :
JMFF014L18- GTCGTGGCGCTTATGGCATCGTCTGTGCGGCTATAAACTCTGAGACGCGTGAGGAGGTTG
JMSF031F06- GTCGTGGCGCTTATGGCATCGTCTGTGCGGCTATAAACTCTGAGACGCGTGAGGAGGTTG
JMSF023F07- GTCGTGGCGCTTATGGCATCGTCTGTGCGGCTATAAACTCTGAGACGCGTGAGGAGGTTG
____________________________________________________________
consensus GTCGTGGCGCTTATGGCATCGTCTGTGCGGCTATAAACTCTGAGACGCGTGAGGAGGTTG
. : . : . : . : . : . :
JMFF014L18- CCATCAAGAAGATTGGCAATGCATTTGACAATAGAATAGATGCCAAAAGGACACTACGAG
JMSF031F06- CCATCAAGAAGATTGGCAATGCATTTGACAATAGAATAGATGCCAAAAGGACACTACGAG
JMSF023F07- CCATCAAGAAGATTGGCAATGCATTTGACAATAGAATAGATGCCAAAAGGACACTACGAG
____________________________________________________________
consensus CCATCAAGAAGATTGGCAATGCATTTGACAATAGAATAGATGCCAAAAGGACACTACGAG
. : . : . : . : . : . :
JMFF014L18- AGATAAAGCTTCTGAGTCACATAGATCATGATAATGTAATTGCAATGAAAGACATAATAA
JMSF031F06- AGATAAAGCTTCTGAGTCACATAGATCATGATAATGTAATTGCAATGAAAGACATAATAA
JMSF023F07- AGATAAAGCTTCTGAGTCACATAGATCATGATAATGTAATTGCAATGAAAGACATAATAA
____________________________________________________________
consensus AGATAAAGCTTCTGAGTCACATAGATCATGATAATGTAATTGCAATGAAAGACATAATAA
. : . : . : . : . : . :
JMFF014L18- GGCCTCCCCAGAAGGAAAACTTCAATGATGTCTACATTGTTTATGAACTAATGGATACTG
JMSF031F06- GGCCTCCCCAGAAGGAAAACTTCAATGATGTCTACATTGTTTATGAACTAATGGATACTG
JMSF023F07- GGCCTCCCCAGAAGGAAAACTTCAATGATGTCTACATTGTTTATGAACTAATGGATACTG
____________________________________________________________
consensus GGCCTCCCCAGAAGGAAAACTTCAATGATGTCTACATTGTTTATGAACTAATGGATACTG
. : . : . : . : . : . :
JMFF014L18- ATCTTCATCAGATTAT
JMSF031F06- ATCTTCATCAGATTATCAAATCCAACCAGGGATTGGCTGATGATCACTGCCGGTACTTCC
JMSF023F07- ATCTTCATCAGATTATCAAATCCAACCAGGGATTGGCTGATGATCACTGCCGGTACTTCC
____________________________________________________________
consensus ATCTTCATCAGATTATCAAATCCAACCAGGGATTGGCTGATGATCACTGCCGGTACTTCC
. : . : . : . : . : . :
JMSF031F06- TTTACCAAATTTTACGTGGACTCAAGTATATTCATTCTGCCAATGTCTTGCACCGAGATC
JMSF023F07- TTTACCAAATTTTACGTGGACTCAAGTATATTCATTCTGCCAATGTCTTGCACCGAGATC
____________________________________________________________
consensus TTTACCAAATTTTACGTGGACTCAAGTATATTCATTCTGCCAATGTCTTGCACCGAGATC
. : . : . : . : . : . :
JMSF031F06- TGAA
JMSF023F07- TGAAACCAAGCAATTTGCTTCTCAATGCCAATTGTGACCTAAAGATTGGAGATTTTGGGC
____________________________________________________________
consensus TGAAACCAAGCAATTTGCTTCTCAATGCCAATTGTGACCTAAAGATTGGAGATTTTGGGC
. : . : . : . : . : . :
JMSF023F07- TTGCAAGGACGACATCTGAGACAGACTTCATGACTGAGTATGTTGTAACTCGCTGGTATC
rJMSF023F07+ TGAGACAGACTTCATGACTGAGTATGNTGTAACTCGCTGGTATC
____________________________________________________________
consensus TTGCAAGGACGACATCTGAGACAGACTTCATGACTGAGTATGTTGTAACTCGCTGGTATC
. : . : . : . : . : . :
JMSF023F07- GTGCACCAGAACTGCTCTTGAACTGTTC
rJMFF014L18+ GTTCAGAATACACGGCAGCAATTGACATTTGGTCAG
rJMSF019L04+ TTGGTCAG
rJMSF023F07+ GTGCACCAGAACTGCTCTTGAACTGTTCAGAATACACGGCAGCAATTGACATTTGGTCAG
rJMSF031F06+ GTTCAGAATACACGGCAGCAANTGACA-TTGGTCAG
____________________________________________________________
consensus GTGCACCAGAACTGCTCTTGAACTGTTCAGAATACACGGCAGCAATTGACATTTGGTCAG
. : . : . : . : . : . :
rJMFF014L18+ TAGGTTGCATACTTGGTGAAATCCTGACAAGACAACCACTTTTTCCAGGCAGAGATTATG
rJMSF019L04+ TNGGNTGCATACTTGGTGAAATCATGACAAGACAACCCCTCTTTCCTGGCAANGATTATG
rJMSF023F07+ TAGGTTGCATACTTGGTGAAATCCTGACAAGACAACCACTTTTTCCAGGCAGAGATTATG
rJMSF031F06+ TAGGTNGCATACTTGGNGAAATCCTGACAAGACAACCACTTTTTCCAGGCAGAGATTATG
____________________________________________________________
consensus TAGGTTGCATACTTGGTGAAATCCTGACAAGACAACCACTTTTTCCAGGCAGAGATTATG
. : . : . : . : . : . :
rJMFF014L18+ TTCATCAGTTAAGACTTATCACAGAGCTGATAGGATCACCTGATGATGCCAGTCTTGGAT
rJMSF019L04+ TTCATCAGTTGAGACTTATCACAGAGCTCATAGGATCACCTGATGACGCAAGCCTTGGGT
rJMSF023F07+ TTCATCAGTTAAGACTTATCACAGAGCTGATAGGATCACCTGATGATGCCAGTCTTGGAT
rJMSF031F06+ TTCATCAGTTAAGACTTATCACAGAGCTGATAGGATCACCTGATGATGCCAGTCTTGGAT
____________________________________________________________
consensus TTCATCAGTTAAGACTTATCACAGAGCTGATAGGATCACCTGATGATGCCAGTCTTGGAT
. : . : . : . : . : . :
rJMFF014L18+ TTCTCCGTAGTGATAATGCCCGGAGATATGTTAGACAACTTCCACAGTATCCAAGGCAGC
rJMSF019L04+ TTCTTCGGAGTGAAAATGCCCGAAGGTACGTTAGGCAGCTTCCACAGTACCCAAAGCAAC
rJMSF023F07+ TTCTCCGTAGTGATAATGCCCGGAGATATGTTAGACAACTTCCACAGTATCCAAGGCAGC
rJMSF031F06+ TTCTCCGTAGTGATAATGCCCGGAGATATGTTAGACAACTTCCACAGTATCCAAGGCAGC
____________________________________________________________
consensus TTCTCCGTAGTGATAATGCCCGGAGATATGTTAGACAACTTCCACAGTATCCAAGGCAGC
. : . : . : . : . : . :
rJMFF014L18+ AGTTTTCTGCTAGATTTCCCAATTCATCTCCAGGAGCTGTGGATTTGCTTGAAAGAATGC
rJMSF019L04+ AATTCTCGTCTAGATTTCCCAATTCCTCTCCTGGAGNTGTTGATTTGCTTGAAAAAATGC
rJMSF023F07+ AGTTTTCTGCTAGATTTCCCAATTCATCTCCAGGAGCTGTGGATTTGCTTGAAAGAATGC
rJMSF031F06+ AGTTTTCTGCTAGATTTCCCAATTCATCTCCAGGAGCTGTGGATTTGCTTGAAAGAATGC
____________________________________________________________
consensus AGTTTTCTGCTAGATTTCCCAATTCATCTCCAGGAGCTGTGGATTTGCTTGAAAGAATGC
. : . : . : . : . : . :
rJMFF014L18+ TTGTGTTTGATCCTAGTCGGCGTATTACAGTGGACGAGGCACTCTGCCATCCATACTTGG
rJMSF019L04+ TAGTGTTTGATCCTAGCAAGCGTATTACAGTCGAAGGGGCACTCTGCCATCCCTACTTGG
rJMSF023F07+ TTGTGTTTGATCCTAGTCGGCGTATTACAGTGGACGAGGCACTCTGCCATCCATACTTGG
rJMSF031F06+ TTGTGTTTGATCCTAGTCGGCGTATTACAGTGGACGAGGCACTCTGCCATCCATACTTGG
____________________________________________________________
consensus TTGTGTTTGATCCTAGTCGGCGTATTACAGTGGACGAGGCACTCTGCCATCCATACTTGG
. : . : . : . : . : . :
rJMFF014L18+ GACCTCTTCACGATATCAATGAGGAGCCAGTTTGCCCAAGGCCTTTCAGTTTTGATTTTG
rJMSF019L04+ CGCCTCTTCATAATATCAATGAGGAACCTGTTTGTCCTATGCCTTTCAATTTCGATTTTG
rJMSF023F07+ GACCTCTTCACGATATCAATGAGGAGCCAGTTTGCCCAAGGCCTTTCAGTTTTGATTTTG
rJMSF031F06+ GACCTCTTCACGATATCAATGAGGAGCCAGTTTGCCCAAGGCCTTTCAGTTTTGATTTTG
____________________________________________________________
consensus GACCTCTTCACGATATCAATGAGGAGCCAGTTTGCCCAAGGCCTTTCAGTTTTGATTTTG
. : . : . : . : . : . :
rJMFF014L18+ AACAGCCATCCTTCACTGAGGAAAATATTAAGGAGCTCATCTGGAGGGAATCTGTAAAAT
rJMSF019L04+ ACCAGCCNTCCTTCANNGAAGAAAACATTAAGGAGCTCATCTGGCTGGAAGCTNTAAAAT
rJMSF023F07+ AACAGCCATCCTTCACTGAGGAAAATATTAAGGAGCTCATCTGGAGGGAATCTGTAAAAT
rJMSF031F06+ AACAGCCATCCTTCACTGAGGAAAATATTAAGGAGCTCATCTGGAGGGAATCTGTAAAAT
____________________________________________________________
consensus AACAGCCATCCTTCACTGAGGAAAATATTAAGGAGCTCATCTGGAGGGAATCTGTAAAAT
. : . : . : . : . : . :
rJMFF014L18+ TCAACCCAGATCCAGCTTATTGAGATGTGATAGCATGATATATACCATTACATTACTAAA
rJMSF019L04+ TCAATCCAGA
rJMSF023F07+ TCAACCCAGATCCAGCTTATTGAGATGTGATAGCATGATATATACCANTACATTACTAAA
rJMSF031F06+ TCAACCCAGATCCAGCTTATTGAGATGTGATAGCATGATATATACCATTACATTACTAAA
____________________________________________________________
consensus TCAACCCAGATCCAGCTTATTGAGATGTGATAGCATGATATATACCATTACATTACTAAA
. : . : . : . : . : . :
rJMFF014L18+ TCGAACATTGTATCAATCCTGAATCCTGTATGTATGCTGTAGAAGAGATTAGCATTGCGT
rJMSF023F07+ TCGAACATTGTATCAATCCTGAATCCTGTATGTATGCTGTAGAAGAGATTAGCANTGCGT
rJMSF031F06+ TCGAACATTGTATCAATCCTGAATCCTGTATGTATGCTGTAGAAGAGATTAGCANTGCGT
____________________________________________________________
consensus TCGAACATTGTATCAATCCTGAATCCTGTATGTATGCTGTAGAAGAGATTAGCATTGCGT
. : . : . : . : . : . :
rJMFF014L18+ TTGAATTTGTCATTAGTTGATTCTATTATCTTGCGTGGGTAGCCCTCATCTGAATACCAA
rJMSF023F07+ TTGAATTTGTCATTAGTTGATTCTATTATCTTGCGTGGGTAGCCCTCATCTGAATACCAA
rJMSF031F06+ TTGAATTTGTCATTAGTTGATTCTATTATCTTGCGTGGGTAGCCCTCATCTGAATACCAA
____________________________________________________________
consensus TTGAATTTGTCATTAGTTGATTCTATTATCTTGCGTGGGTAGCCCTCATCTGAATACCAA
. : . : . : . : . : . :
rJMFF014L18+ GTCCTTCTTGTTCCTGTTTGGATGGTAGGAAGGATCAGAATACTTGTGTGTGATGGTTGC
rJMSF023F07+ GTCCTTCTTGTTCCTGTTTGGATGGTAGGAAGGATCAGAATACTTGTGTGTGATGGTTGC
rJMSF031F06+ GTCCTTCTTGTTCCTGTTTGGATGGTAGGAAGGATCAGAATACTTGTGTGTGATGGTTGC
____________________________________________________________
consensus GTCCTTCTTGTTCCTGTTTGGATGGTAGGAAGGATCAGAATACTTGTGTGTGATGGTTGC
. : . : . : . : . : . :
rJMFF014L18+ CCGTAATGCTCAC
rJMSF023F07+ CCGTAATGCTCACCTTTTAATTCATCTTTGCTTT
rJMSF031F06+ CCGTAATGCTCACCTTTTAATTCATCTTTGCTTTTCAGCACATTGACCANTACATATATA
____________________________________________________________
consensus CCGTAATGCTCACCTTTTAATTCATCTTTGCTTTTCAGCACATTGACCANTACATATATA