Contig 014013:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF030L16Sequence675014013 (2)ref|XP_011008851.1|4e-52PREDICTED: probable receptor-like protein kinase At1g49730 isoform X2 [Populus 691014013 (2)ref|XP_009789004.1|1e-97PREDICTED: probable receptor-like protein kinase At1g49730 [Nicotiana sylvestri

Alignment

This contig is upended


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JMSF030L16-                                  GGGCACACAGGTCATTTTCTTCACCCTCTTCCTCCTT
                      ____________________________________________________________
consensus                                    GGGCACACAGGTCATTTTCTTCACCCTCTTCCTCCTT
 
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JMSF030L16-           CTTTCTTCTTCTTCACTTCTTCTTGCAGATCTTTCCATGGACCCTTTGACTCTCAAGATC
                      ____________________________________________________________
consensus             CTTTCTTCTTCTTCACTTCTTCTTGCAGATCTTTCCATGGACCCTTTGACTCTCAAGATC
 
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JMSF030L16-           AGGCTCTTCTTCCTCCACTGGATTCACTGCAGATCTCACCCCAGTTCAGTGTCCTTAGTC
                      ____________________________________________________________
consensus             AGGCTCTTCTTCCTCCACTGGATTCACTGCAGATCTCACCCCAGTTCAGTGTCCTTAGTC
 
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JMSF030L16-           AAGCACTTTTCATACAAGGATATAAAGAGAGGCACTGATGGATTTAGAAGAATCCTTGAT
                      ____________________________________________________________
consensus             AAGCACTTTTCATACAAGGATATAAAGAGAGGCACTGATGGATTTAGAAGAATCCTTGAT
 
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JMSF030L16-           ACCTCTTCCAATGGGGGGATGGCATATAGAGCTAGGTTTCAGAATGGCCAGGTTGCTTTT
                      ____________________________________________________________
consensus             ACCTCTTCCAATGGGGGGATGGCATATAGAGCTAGGTTTCAGAATGGCCAGGTTGCTTTT
 
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JMSF030L16-           GTTAAAGAAATCAAAATTCTTGATGATCAAGACGACGATGTCTTCTTTGGCGAAGTGCGG
                      ____________________________________________________________
consensus             GTTAAAGAAATCAAAATTCTTGATGATCAAGACGACGATGTCTTCTTTGGCGAAGTGCGG
 
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JMSF030L16-           CTCCTTGCGCGTTTGCATCATCGCCACATTGTTGCTCTTAGGGGTTTCTCGAGTGGACCT
                      ____________________________________________________________
consensus             CTCCTTGCGCGTTTGCATCATCGCCACATTGTTGCTCTTAGGGGTTTCTCGAGTGGACCT
 
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JMSF030L16-           AAGAGATGTGTAGTGTCTTTTTTCAGATTGGAGTACTCTTCAATCCATTTCTCAGGTTTC
rJMSF030L16+                                       GGAGTACTCTTCAATCCATTTCTCAGGTTTC
                      ____________________________________________________________
consensus             AAGAGATGTGTAGTGTCTTTTTTCAGATTGGAGTACTCTTCAATCCATTTCTCAGGTTTC
 
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JMSF030L16-           TGGTGTTTGAAAGTACGGAGAATGGGAGTCTGAAGGATCACCTGTCCGACCCTTTGAAGA
rJMSF030L16+          TGGTGTTTGAAAGTACGGAGAATGGGAGTCTGAAGGATCACCTGTCCGACCCTTTGAAGA
                      ____________________________________________________________
consensus             TGGTGTTTGAAAGTACGGAGAATGGGAGTCTGAAGGATCACCTGTCCGACCCTTTGAAGA
 
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JMSF030L16-           CTCCATTAAACTGGAGAACAAGGTTGCAGATAGCCATTGGCATAGCTGCTGCTTTGGAAT
rJMSF030L16+          CTCCATTAAACTGGAGAACAAGGTTGCAGATAGCCATTGGCATAGCTGCTGCTTTGGAAT
                      ____________________________________________________________
consensus             CTCCATTAAACTGGAGAACAAGGTTGCAGATAGCCATTGGCATAGCTGCTGCTTTGGAAT
 
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JMSF030L16-           ACTTGCATTTCTTCTGTGATCCCCCGCTCTACCTCGCTACCATCAGTTCAAGTACCATTA
rJMSF030L16+          ACTTGCATTTCTTCTGTGATCCCCCGCTCTACCTCGCTACCATCAGTTCAAGTACCATTA
                      ____________________________________________________________
consensus             ACTTGCATTTCTTCTGTGATCCCCCGCTCTACCTCGCTACCATCAGTTCAAGTACCATTA
 
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JMSF030L16-           TGTTGGACGAGAACTTCACTGCAAANCTTGCTGATATC                      
rJMSF030L16+          TGTTGGACGAGAACTTCACTGCAAAACTTGCTGATATCAGCCTCCTTTGTTCTGTTGGAA
                      ____________________________________________________________
consensus             TGTTGGACGAGAACTTCACTGCAAAACTTGCTGATATCAGCCTCCTTTGTTCTGTTGGAA
 
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rJMSF030L16+          GTGACACAATGCTGCCAGAATCATCATGCTCAAAAGTATGCAGGGGTGAGAGATGCAAGA
                      ____________________________________________________________
consensus             GTGACACAATGCTGCCAGAATCATCATGCTCAAAAGTATGCAGGGGTGAGAGATGCAAGA
 
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rJMSF030L16+          ACTTGGTTTTCCAGCTGGGAGTGCTGATCCTGGAGCTAATCACTGGGCAATCTGCAGAAG
                      ____________________________________________________________
consensus             ACTTGGTTTTCCAGCTGGGAGTGCTGATCCTGGAGCTAATCACTGGGCAATCTGCAGAAG
 
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rJMSF030L16+          ATGGGGGTGGTGATTTAGTGAAGTGGGTACAAGAATCTCGATTCAGAACATCGATATACA
                      ____________________________________________________________
consensus             ATGGGGGTGGTGATTTAGTGAAGTGGGTACAAGAATCTCGATTCAGAACATCGATATACA
 
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rJMSF030L16+          AAATGTTGGATCCTGATCTTGGAGACGAGTATGATTCCCAGGAGCTTAAAGGTCTTCTAA
                      ____________________________________________________________
consensus             AAATGTTGGATCCTGATCTTGGAGACGAGTATGATTCCCAGGAGCTTAAAGGTCTTCTAA
 
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rJMSF030L16+          CAGTGGCAAGATTGTGTATAAAATCTGCTAACAAGCCAGCAGTAAAGACATCCCAGATTT
                      ____________________________________________________________
consensus             CAGTGGCAAGATTGTGTATAAAATCTGCTAACAAGCCAGCAGTAAAGACATCCCAGATTT
 
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rJMSF030L16+          TATGGTACCTCCAAAACAAAATAAGGATCACCCAAGATGTTGTTCAATAGTGTTGTCTCA
                      ____________________________________________________________
consensus             TATGGTACCTCCAAAACAAAATAAGGATCACCCAAGATGTTGTTCAATAGTGTTGTCTCA
 
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rJMSF030L16+          TAGTCATATGATAAATACAAAAGTACCATGGTTTTTGGTTTGATCAAGAAACTAGCTGTT
                      ____________________________________________________________
consensus             TAGTCATATGATAAATACAAAAGTACCATGGTTTTTGGTTTGATCAAGAAACTAGCTGTT