Contig 014008:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF037L21Sequence547014008 (2)ref|XP_006351906.1|1e-43PREDICTED: F-box protein 7-like isoform X1 [Solanum tuberosum]
JMSF030D19Sequence641023215ref|XP_009629387.1|6e-84PREDICTED: F-box protein 7 [Nicotiana tomentosiformis]737014008 (2)ref|XP_006351906.1|2e-68PREDICTED: F-box protein 7-like isoform X1 [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF030D19+ ATAAGAATTCGTCACAA
                      ____________________________________________________________
consensus ATAAGAATTCGTCACAA
 
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rJMSF030D19+ AAAGTGAAGGATGTGGCAAAATTTATTAACTTCCGTGCTTCAAAGGCTGATTCTGTTTTT
                      ____________________________________________________________
consensus AAAGTGAAGGATGTGGCAAAATTTATTAACTTCCGTGCTTCAAAGGCTGATTCTGTTTTT
 
. : . : . : . : . : . :
rJMSF030D19+ AGTGGGAGTTATACTCTGACAGAGGATAAGGTTGAAGCTGCTCTCTTATATCCTGGTTTG
                      ____________________________________________________________
consensus AGTGGGAGTTATACTCTGACAGAGGATAAGGTTGAAGCTGCTCTCTTATATCCTGGTTTG
 
. : . : . : . : . : . :
rJMFF037L21+ TAAGGGGGNCAGTGAAGGGNGCCANTCCC
rJMSF030D19+ CGTCCAACTGTACTGAGAATTCGCTTGAGGTTAAGGGGGACAGTGAAGGGTGCCAATAAC
                      ____________________________________________________________
consensus CGTCCAACTGTACTGAGAATTCGCTTGAGGTTAAGGGGGACAGTGAAGGGTGCCAATCCC
 
. : . : . : . : . : . :
rJMFF037L21+ CGGATGGATCTGCTGGCACTTTTAACCAGTGGTGTGAATGATAATGAGGTTAACGTCCCT
rJMSF030D19+ CGGATGGATCTACTGGCACTTTTAACCAGTGGTGTGAATGATAATGAGGTTAACGTCCCT
                      ____________________________________________________________
consensus CGGATGGATCTGCTGGCACTTTTAACCAGTGGTGTGAATGATAATGAGGTTAACGTCCCT
 
. : . : . : . : . : . :
rJMFF037L21+ GATGAAGACATTCTTGGAGTTGTTGAGGGTTGGCAAGAGGACGAGACACATAACCCTGAT
rJMSF030D19+ GATGAAGACATTCTTGGAGTTGTTGAGGGTTGGCAAGAGGACGAGACACATAACCCTGAT
                      ____________________________________________________________
consensus GATGAAGACATTCTTGGAGTTGTTGAGGGTTGGCAAGAGGACGAGACACATAACCCTGAT
 
. : . : . : . : . : . :
rJMFF037L21+ GTACCAGCTATTTCACACAAAAGGGGTCTTACACCTTTTGTC-TTTGTCCCGTTTGAGGA
rJMSF030D19+ GTACCAGCTATTTCACACAAAAGGGGTCTTACACCTTTTGTCTTTTGTCCCGTTTGAGGA
                      ____________________________________________________________
consensus GTACCAGCTATTTCACACAAAAGGGGTCTTACACCTTTTGTCTTTTGTCCCGTTTGAGGA
 
. : . : . : . : . : . :
rJMFF037L21+ GGTCGAGACGTCAGTCCTGAATCTGTCCGTAGAAAGAATGGATTACTTCGTTCCTGGTTG
rJMSF030D19+ GGTCGAGACGTCAGTCCTGAATCTGTCCGTAGAAAGAATGGATTACTTCGTTCCTGGTTG
                      ____________________________________________________________
consensus GGTCGAGACGTCAGTCCTGAATCTGTCCGTAGAAAGAATGGATTACTTCGTTCCTGGTTG
 
. : . : . : . : . : . :
rJMFF037L21+ AGAAGTAGAAGGTTGGAGTAAGGATTACTTCCTTGCTGGTGGAGAAGGAGAACTAGCCGG
rJMSF030D19+ AGAAGTAGAAGGTTGGAGTAAGGATTACTTCCTTGCTGGTGGAGAAGGAGAACTAGCCGG
                      ____________________________________________________________
consensus AGAAGTAGAAGGTTGGAGTAAGGATTACTTCCTTGCTGGTGGAGAAGGAGAACTAGCCGG
 
. : . : . : . : . : . :
rJMFF037L21+ TGAAGGATTCATTGGCTGTGTGCCTGTGTTACATATTTAAGTATAAATGTATTAGTTTTT
rJMSF030D19+ TGAAGGATTCATTGGCTGTGTGCCTGTGTTACATATTTAAGTATAAATGTATTAGTTTTT
                      ____________________________________________________________
consensus TGAAGGATTCATTGGCTGTGTGCCTGTGTTACATATTTAAGTATAAATGTATTAGTTTTT
 
. : . : . : . : . : . :
rJMFF037L21+ TGTTGACATATAGAAATATGTATGAAGTCATGAATGGTTGGTTAGGTATGAAGTGGTATC
rJMSF030D19+ TGTTGACATATAGAAATATGTATGAAGTCATGAATGGTTGGTTAGGTATGAAGTGGTATC
                      ____________________________________________________________
consensus TGTTGACATATAGAAATATGTATGAAGTCATGAATGGTTGGTTAGGTATGAAGTGGTATC
 
. : . : . : . : . : . :
rJMFF037L21+ TTGTTTTATGATACATGTGTGAAGTGTGATGGATTCCATGTCAAGTAAGTTGTGCCATGG
rJMSF030D19+ TTGTTTTATGATACATGTGTGAAGTGTGATGGATTCCATGTCAAGTAAGTTGTGCCATGG
                      ____________________________________________________________
consensus TTGTTTTATGATACATGTGTGAAGTGTGATGGATTCCATGTCAAGTAAGTTGTGCCATGG
 
. : . : . : . : . : . :
rJMFF037L21+ TCTATGTTTCTGTAAATATAATAAAATTGATTACAAT
rJMSF030D19+ TCTATGTTTCTGTAAATATAATAAAATTGATTACAATTTTAGTTTCGTTATTCGAAGATA
                      ____________________________________________________________
consensus TCTATGTTTCTGTAAATATAATAAAATTGATTACAATTTTAGTTTCGTTATTCGAAGATA