Contig 014004:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF002I07+                                                           TAACNCGAACG
                      ____________________________________________________________
consensus                                                              TAACNCGAACG
 
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rJMSF002I07+          TTCAGGGAAAACGGGGTGAACGTGACAAGAGCCGAGATATCAACGATGGGAGAAACCGCA
rJMFF029I11+              GGGAAAACGGGGTGAACGTGACAAGAGCCGAGATATCAACGATGGGAGAAACCGCA
rJMSF029M03+              GGGAAAACGGGGTGAACGTGACAAGAGCCGAGATATCAACGATGGGAGAAACCGCA
                      ____________________________________________________________
consensus             TTCAGGGAAAACGGGGTGAACGTGACAAGAGCCGAGATATCAACGATGGGAGAAACCGCA
 
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rJMSF002I07+          ACAAACGTGTTTTNCGTGACAGATGCTAGTGGGAGTCCNGCAGATCCAAAGATGATCGAG
rJMFF029I11+          ACAAACGTGTTTTACGTGACAGATGCTAGTGGGAGTCCAGCAGATCCAAAGATGATCGAG
rJMSF029M03+          ACAAACGTGTTTTACGTGACAGATGCTAGTGGGAGTCCAGCAGATCCAAAGATGATCGAG
                      ____________________________________________________________
consensus             ACAAACGTGTTTTACGTGACAGATGCTAGTGGGAGTCCAGCAGATCCAAAGATGATCGAG
 
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rJMSF002I07+          GCAGTTNGACAAAAAGTNGGTTTGGGTGTNTTGAAAGTGAAGGAACTGCCGACGACCAAT
rJMFF029I11+          GCAGTTNGACAAAAAGTCGGTTTGGGTGTNTTGAAAGTGAAGGAACTGCCGACGACCAAT
rJMSF029M03+          GCAGTTCGACAAAAAGTCGGTTTGGGTGTNTTGAAAGTGAAGGAACTGCCGACGACCAAT
                      ____________________________________________________________
consensus             GCAGTTCGACAAAAAGTCGGTTTGGGTGTNTTGAAAGTGAAGGAACTGCCGACGACCAAT
 
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rJMSF002I07+          CAGCAGAAGGCCGAGGCGGAGAAGGAACAACCCGAGATGGGTGTTGGTGGCGCCNTGCTA
rJMFF029I11+          CAGCAGAAGGCCGAGGCGGAGAAGGAACAACCCGAGATGGGTGTTGGTGGCGCCATGNTA
rJMSF029M03+          CAGCAGAAGGCCGAGGCGGAGAAGGAACAACCCGAGATGGGTGTTGGTGGCGCCNTGCTA
                      ____________________________________________________________
consensus             CAGCAGAAGGCCGAGGCGGAGAAGGAACAACCCGAGATGGGTGTTGGTGGCGCCATGCTA
 
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rJMSF002I07+          CTNTCGCTNGGGAGCATNGTCAGGAGGAATNTTTNCAACCTGGGATTAATCAAATNGTGT
rJMFF029I11+          CTNTCGCTNGGGAGCATNGTCAGGAGGAATNTTTACAACCTGGGATTAATCAAATNGTGT
rJMSF029M03+          CTCTCGCTNGGGAGCATNGTCNGGAGGAATCTTTNCAACCTGGGATTAATCAAATCGTGT
                      ____________________________________________________________
consensus             CTCTCGCTNGGGAGCATNGTCAGGAGGAATCTTTACAACCTGGGATTAATCAAATCGTGT
 
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rJMSF002I07+          TNTTGAATTCNCGACGAACAACAACAACAAACGACCTCAAGTNCCCTAGGCNTTGTTGTA
rJMFF029I11+          TNTTGAATTCACGACGAACAACAACAACAAACGACCTCAAGTCCCCTAGGCATTGTTGTA
rJMSF029M03+          TNTTGAATTCNCGNCGAACAACAACAACAAACGACCTCAAGTCCCCTAGGCNTTGTTGTA
                      ____________________________________________________________
consensus             TNTTGAATTCACGACGAACAACAACAACAAACGACCTCAAGTCCCCTAGGCATTGTTGTA
 
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rJMSF002I07+          CATAGATAGGAGGAGTAGGAAAAAAAAAATTGGGGTTTGGTTAATAGCAGTTGTTACAGT
rJMFF029I11+          CATAGATAGGAGGAGTAGGAAAAAAAAAATTGGGGTTTGGTTAATAGCAGTTGTTACAGT
rJMSF029M03+          CATAGATAGGAGGAGTNGGAAAAAAAAAATTGGGGTTTGGTTAATAGCAGTTGTTACAGT
                      ____________________________________________________________
consensus             CATAGATAGGAGGAGTAGGAAAAAAAAAATTGGGGTTTGGTTAATAGCAGTTGTTACAGT
 
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rJMSF002I07+          GGGTGGTAGGACAGGTAGACCGGCAACAGGGTAGGTGGGTGAGATTGTGGGGCCCTCCCA
rJMFF029I11+          GGGTGGTAGGACAGGTAGACCGGCAACAGGGTAGGTGGGTGAGATTGTGGGGCCCTCCCA
rJMSF029M03+          GGGTGGTAGGACAGGTAGACCGGCAACAGGGTAGGTGGGTGAGATTGTGGGGCCCTCCCA
                      ____________________________________________________________
consensus             GGGTGGTAGGACAGGTAGACCGGCAACAGGGTAGGTGGGTGAGATTGTGGGGCCCTCCCA
 
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rJMSF002I07+          CGCCCCCCCATTACAATAGCTGTGAAATTTGCGGGGATGGGAAGATAGAAATAGTAAAAA
rJMFF029I11+          CGCCCCCCCATTACAATAGCTGTGAAATTTGCGGGGATGGGAAGATAGAAATAGT-AAAA
rJMSF029M03+          CGCCCCCCCATTACAATAGCTGTGAAATTTGCGGGGATGGGAAGATAGAAATAGTAAAAA
                      ____________________________________________________________
consensus             CGCCCCCCCATTACAATAGCTGTGAAATTTGCGGGGATGGGAAGATAGAAATAGTAAAAA
 
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rJMSF002I07+          AAAACACGAGGAAGTGGGTGAACCAGATTTGGTTTACAGATTTATTGCGACATGGAGGAC
rJMFF029I11+          AAAACACGAGGAAGTGGGTGAACCAGATTTGGTTTACAGATTTATTGCGACATGGAGGAC
rJMSF029M03+          AAAACACGAGGAAGTGGGTGAACCAGATTTGGTTTACAGATTTATTGCGACATGGAGGAC
                      ____________________________________________________________
consensus             AAAACACGAGGAAGTGGGTGAACCAGATTTGGTTTACAGATTTATTGCGACATGGAGGAC
 
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rJMSF002I07+          AGGCTGGCGGTGATACAGCAAAGAATATTGATTTGTAC                      
rJMFF029I11+          AGGCTGGCGGTGATACAGCAAAGAATATTGATTTGTAC                      
rJMSF029M03+          AGGCTGGCGGTGATACAGCAAAGAATATTGATTTGTACATAGCCACTTTTATCTCAAATT
                      ____________________________________________________________
consensus             AGGCTGGCGGTGATACAGCAAAGAATATTGATTTGTACATAGCCACTTTTATCTCAAATT