Contig 014001:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS042F08Sequence599014001 (2)ref|XP_009776304.1|9e-41PREDICTED: putative nuclear matrix constituent protein 1-like protein [Nicotian
JMSF029D06Sequence668011799 (2)ref|XP_011100100.1|1e-60PREDICTED: putative nuclear matrix constituent protein 1-like protein, partial 741014001 (2)ref|XP_009776304.1|2e-05PREDICTED: putative nuclear matrix constituent protein 1-like protein [Nicotian

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS042F08- GAACTAGG
                      ____________________________________________________________
consensus GAACTAGG
 
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JMFS042F08- AGGAAATTAAAGTCATTCCGGATCGTATCCGTGTTCCTGTAAAACAACAGTCACGTGTGC
                      ____________________________________________________________
consensus AGGAAATTAAAGTCATTCCGGATCGTATCCGTGTTCCTGTAAAACAACAGTCACGTGTGC
 
. : . : . : . : . : . :
JMFS042F08- GATCTGATGAACCAAAACTCTCTTCCAAGCAACTTTTGAAACAACAATCTGAATTGGGTT
                      ____________________________________________________________
consensus GATCTGATGAACCAAAACTCTCTTCCAAGCAACTTTTGAAACAACAATCTGAATTGGGTT
 
. : . : . : . : . : . :
JMFS042F08- CTGGTCCCAGCAGACAGCTTAACAATGGTGTTGGACATGATTCTCCTATTAGAGGAGAGT
                      ____________________________________________________________
consensus CTGGTCCCAGCAGACAGCTTAACAATGGTGTTGGACATGATTCTCCTATTAGAGGAGAGT
 
. : . : . : . : . : . :
JMFS042F08- TGGAAAATTCCTCTTCTCCCCTCTCTACTCCTTTCTCATGGCTTAAGAGATGTGCTGATA
                      ____________________________________________________________
consensus TGGAAAATTCCTCTTCTCCCCTCTCTACTCCTTTCTCATGGCTTAAGAGATGTGCTGATA
 
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JMFS042F08- CATTGCTTGATCGGGGACAGAGCAACAAAAGGAGGAGGCAAGATTTTGCATCTCAATCAC
                      ____________________________________________________________
consensus CATTGCTTGATCGGGGACAGAGCAACAAAAGGAGGAGGCAAGATTTTGCATCTCAATCAC
 
. : . : . : . : . : . :
JMFS042F08- AAGACAATATAACACCTTGTGAACTAGCAACTGAATTAGATGAACAAGCTTCTGAGAATC
                      ____________________________________________________________
consensus AAGACAATATAACACCTTGTGAACTAGCAACTGAATTAGATGAACAAGCTTCTGAGAATC
 
. : . : . : . : . : . :
JMFS042F08- CAGAGGTGGAGTTTGACCAAATTCCAGTTAGTGCAGAGGAGACTACTGTATTCATAGATA
rJMSF029D06+ AATTCCAGTTAGTGCAGAGGAGACTACTGTATTCATAGATA
                      ____________________________________________________________
consensus CAGAGGTGGAGTTTGACCAAATTCCAGTTAGTGCAGAGGAGACTACTGTATTCATAGATA
 
. : . : . : . : . : . :
JMFS042F08- AAGTGGTTACAGTTCGAGAAGTGACCACACTTGATGTCAAAAGAGTTCCTGGGGACACTC
rJMSF029D06+ AAGTGGTTACAGTTCGAGAAGTGACCACACTTGATGTCAAAAGAGTTCCTGGGGACACTC
                      ____________________________________________________________
consensus AAGTGGTTACAGTTCGAGAAGTGACCACACTTGATGTCAAAAGAGTTCCTGGGGACACTC
 
. : . : . : . : . : . :
JMFS042F08- AGGGAGGTTTGCCCGAAAAGAGCAATTATAAGGGAGGAAGTAGTGATGACAGTGGCCACT
rJMSF029D06+ AGGGAGGTTTGCCCGAAAAGAGCAATTATAAGGGAGGAAGTAGTGATGACAGTGGCCACT
                      ____________________________________________________________
consensus AGGGAGGTTTGCCCGAAAAGAGCAATTATAAGGGAGGAAGTAGTGATGACAGTGGCCACT
 
. : . : . : . : . : . :
JMFS042F08- TAGATAGAATTGGGAAGCTTGAAGAAGATAGGACTATATCGAGAAAGTAGT
rJMSF029D06+ TAGATAGAATTGGGAAGCTTGAAGAAGATAGGACTATATCGAGAAAGTAGTTTTAGATTT
                      ____________________________________________________________
consensus TAGATAGAATTGGGAAGCTTGAAGAAGATAGGACTATATCGAGAAAGTAGTTTTAGATTT
 
. : . : . : . : . : . :
rJMSF029D06+ CTTGACAACTCCAAGTTTGCAAGACGGTGTCAGGCTATCAGCAATACTATAGATATCTAA
                      ____________________________________________________________
consensus CTTGACAACTCCAAGTTTGCAAGACGGTGTCAGGCTATCAGCAATACTATAGATATCTAA
 
. : . : . : . : . : . :
rJMSF029D06+ TTACTAATTCAACCTTTGAAGCCAGAATATAATGTATAGAGTAGCGGGTACAATCTTTAC
                      ____________________________________________________________
consensus TTACTAATTCAACCTTTGAAGCCAGAATATAATGTATAGAGTAGCGGGTACAATCTTTAC
 
. : . : . : . : . : . :
rJMSF029D06+ TGCACATGCTGACCAGTTTCTGCGGCTGAACATGTAAATCATTCAGGCTGACCTGATACT
                      ____________________________________________________________
consensus TGCACATGCTGACCAGTTTCTGCGGCTGAACATGTAAATCATTCAGGCTGACCTGATACT
 
. : . : . : . : . : . :
rJMSF029D06+ CTAGTGGTCTGTAAATTCTGTGTGTTTGCGTGGCAGAGTTTCGTTTGTGGATAGTATTTT
                      ____________________________________________________________
consensus CTAGTGGTCTGTAAATTCTGTGTGTTTGCGTGGCAGAGTTTCGTTTGTGGATAGTATTTT
 
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rJMSF029D06+ TAGGTGGTTGGTTAATGGATGTGTGAAGTTTGGTGTTTGAATACTTCTGTGCTCCCATGA
                      ____________________________________________________________
consensus TAGGTGGTTGGTTAATGGATGTGTGAAGTTTGGTGTTTGAATACTTCTGTGCTCCCATGA
 
. : . : . : . : . : . :
rJMSF029D06+ TATGGTGTCTCTACATTTAGAGTGGTTTTGTTTACTATTATTATGTTTGGTTTTTGAGAA
                      ____________________________________________________________
consensus TATGGTGTCTCTACATTTAGAGTGGTTTTGTTTACTATTATTATGTTTGGTTTTTGAGAA
 
. : . : . : . : . : . :
rJMSF029D06+ TTTAGGTATCTATCATTGTTTGAGATATTGCAGTGTGATGTACTGGGATGTAGCCCGTCC
                      ____________________________________________________________
consensus TTTAGGTATCTATCATTGTTTGAGATATTGCAGTGTGATGTACTGGGATGTAGCCCGTCC
 
. : . : . : . : . : . :
rJMSF029D06+ AAATGAAATTTCCTTTGTGATAGTATTGTTATTTTTCAATTACTTGAAACAAAAGATCAC
                      ____________________________________________________________
consensus AAATGAAATTTCCTTTGTGATAGTATTGTTATTTTTCAATTACTTGAAACAAAAGATCAC