Contig 014001:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS042F08Sequence599014001 (2)ref|XP_009776304.1|9e-41PREDICTED: putative nuclear matrix constituent protein 1-like protein [Nicotian
JMSF029D06Sequence668011799 (2)ref|XP_011100100.1|1e-60PREDICTED: putative nuclear matrix constituent protein 1-like protein, partial 741014001 (2)ref|XP_009776304.1|2e-05PREDICTED: putative nuclear matrix constituent protein 1-like protein [Nicotian

Alignment

This contig is upended


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JMFS042F08-                                                               GAACTAGG
                      ____________________________________________________________
consensus                                                                 GAACTAGG
 
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JMFS042F08-           AGGAAATTAAAGTCATTCCGGATCGTATCCGTGTTCCTGTAAAACAACAGTCACGTGTGC
                      ____________________________________________________________
consensus             AGGAAATTAAAGTCATTCCGGATCGTATCCGTGTTCCTGTAAAACAACAGTCACGTGTGC
 
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JMFS042F08-           GATCTGATGAACCAAAACTCTCTTCCAAGCAACTTTTGAAACAACAATCTGAATTGGGTT
                      ____________________________________________________________
consensus             GATCTGATGAACCAAAACTCTCTTCCAAGCAACTTTTGAAACAACAATCTGAATTGGGTT
 
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JMFS042F08-           CTGGTCCCAGCAGACAGCTTAACAATGGTGTTGGACATGATTCTCCTATTAGAGGAGAGT
                      ____________________________________________________________
consensus             CTGGTCCCAGCAGACAGCTTAACAATGGTGTTGGACATGATTCTCCTATTAGAGGAGAGT
 
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JMFS042F08-           TGGAAAATTCCTCTTCTCCCCTCTCTACTCCTTTCTCATGGCTTAAGAGATGTGCTGATA
                      ____________________________________________________________
consensus             TGGAAAATTCCTCTTCTCCCCTCTCTACTCCTTTCTCATGGCTTAAGAGATGTGCTGATA
 
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JMFS042F08-           CATTGCTTGATCGGGGACAGAGCAACAAAAGGAGGAGGCAAGATTTTGCATCTCAATCAC
                      ____________________________________________________________
consensus             CATTGCTTGATCGGGGACAGAGCAACAAAAGGAGGAGGCAAGATTTTGCATCTCAATCAC
 
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JMFS042F08-           AAGACAATATAACACCTTGTGAACTAGCAACTGAATTAGATGAACAAGCTTCTGAGAATC
                      ____________________________________________________________
consensus             AAGACAATATAACACCTTGTGAACTAGCAACTGAATTAGATGAACAAGCTTCTGAGAATC
 
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JMFS042F08-           CAGAGGTGGAGTTTGACCAAATTCCAGTTAGTGCAGAGGAGACTACTGTATTCATAGATA
rJMSF029D06+                             AATTCCAGTTAGTGCAGAGGAGACTACTGTATTCATAGATA
                      ____________________________________________________________
consensus             CAGAGGTGGAGTTTGACCAAATTCCAGTTAGTGCAGAGGAGACTACTGTATTCATAGATA
 
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JMFS042F08-           AAGTGGTTACAGTTCGAGAAGTGACCACACTTGATGTCAAAAGAGTTCCTGGGGACACTC
rJMSF029D06+          AAGTGGTTACAGTTCGAGAAGTGACCACACTTGATGTCAAAAGAGTTCCTGGGGACACTC
                      ____________________________________________________________
consensus             AAGTGGTTACAGTTCGAGAAGTGACCACACTTGATGTCAAAAGAGTTCCTGGGGACACTC
 
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JMFS042F08-           AGGGAGGTTTGCCCGAAAAGAGCAATTATAAGGGAGGAAGTAGTGATGACAGTGGCCACT
rJMSF029D06+          AGGGAGGTTTGCCCGAAAAGAGCAATTATAAGGGAGGAAGTAGTGATGACAGTGGCCACT
                      ____________________________________________________________
consensus             AGGGAGGTTTGCCCGAAAAGAGCAATTATAAGGGAGGAAGTAGTGATGACAGTGGCCACT
 
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JMFS042F08-           TAGATAGAATTGGGAAGCTTGAAGAAGATAGGACTATATCGAGAAAGTAGT         
rJMSF029D06+          TAGATAGAATTGGGAAGCTTGAAGAAGATAGGACTATATCGAGAAAGTAGTTTTAGATTT
                      ____________________________________________________________
consensus             TAGATAGAATTGGGAAGCTTGAAGAAGATAGGACTATATCGAGAAAGTAGTTTTAGATTT
 
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rJMSF029D06+          CTTGACAACTCCAAGTTTGCAAGACGGTGTCAGGCTATCAGCAATACTATAGATATCTAA
                      ____________________________________________________________
consensus             CTTGACAACTCCAAGTTTGCAAGACGGTGTCAGGCTATCAGCAATACTATAGATATCTAA
 
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rJMSF029D06+          TTACTAATTCAACCTTTGAAGCCAGAATATAATGTATAGAGTAGCGGGTACAATCTTTAC
                      ____________________________________________________________
consensus             TTACTAATTCAACCTTTGAAGCCAGAATATAATGTATAGAGTAGCGGGTACAATCTTTAC
 
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rJMSF029D06+          TGCACATGCTGACCAGTTTCTGCGGCTGAACATGTAAATCATTCAGGCTGACCTGATACT
                      ____________________________________________________________
consensus             TGCACATGCTGACCAGTTTCTGCGGCTGAACATGTAAATCATTCAGGCTGACCTGATACT
 
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rJMSF029D06+          CTAGTGGTCTGTAAATTCTGTGTGTTTGCGTGGCAGAGTTTCGTTTGTGGATAGTATTTT
                      ____________________________________________________________
consensus             CTAGTGGTCTGTAAATTCTGTGTGTTTGCGTGGCAGAGTTTCGTTTGTGGATAGTATTTT
 
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rJMSF029D06+          TAGGTGGTTGGTTAATGGATGTGTGAAGTTTGGTGTTTGAATACTTCTGTGCTCCCATGA
                      ____________________________________________________________
consensus             TAGGTGGTTGGTTAATGGATGTGTGAAGTTTGGTGTTTGAATACTTCTGTGCTCCCATGA
 
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rJMSF029D06+          TATGGTGTCTCTACATTTAGAGTGGTTTTGTTTACTATTATTATGTTTGGTTTTTGAGAA
                      ____________________________________________________________
consensus             TATGGTGTCTCTACATTTAGAGTGGTTTTGTTTACTATTATTATGTTTGGTTTTTGAGAA
 
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rJMSF029D06+          TTTAGGTATCTATCATTGTTTGAGATATTGCAGTGTGATGTACTGGGATGTAGCCCGTCC
                      ____________________________________________________________
consensus             TTTAGGTATCTATCATTGTTTGAGATATTGCAGTGTGATGTACTGGGATGTAGCCCGTCC
 
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rJMSF029D06+          AAATGAAATTTCCTTTGTGATAGTATTGTTATTTTTCAATTACTTGAAACAAAAGATCAC
                      ____________________________________________________________
consensus             AAATGAAATTTCCTTTGTGATAGTATTGTTATTTTTCAATTACTTGAAACAAAAGATCAC