Contig 014000:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF029B24Sequence664013403 (3)ref|XP_009774004.1|7e-67PREDICTED: protein fluG [Nicotiana sylvestris]723014000 (2)emb|CAN73462.1|9e-88hypothetical protein VITISV_033907 [Vitis vinifera]
JMSF048G23Sequence678014000 (2)gb|AFN42875.1|6e-22glutamine synthetase [Camellia sinensis]619002947 (2)

Alignment

This contig is upended


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JMSF048G23-                                  GGTGTTTCTTTTCCGCCCTTTGGTGTCCGCTCTTCAC
                      ____________________________________________________________
consensus                                    GGTGTTTCTTTTCCGCCCTTTGGTGTCCGCTCTTCAC
 
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JMSF048G23-           TGTCTAGCTGTCGTTCTCGCCAGGGAAGAGGTGCGCTTGTCGATGGCCGTTCGAGGAGGG
                      ____________________________________________________________
consensus             TGTCTAGCTGTCGTTCTCGCCAGGGAAGAGGTGCGCTTGTCGATGGCCGTTCGAGGAGGG
 
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JMSF048G23-           GTAGGTCCGGCAGGTCGTTCTTGCCGACGACTCCGCGGTCGGGTGTTTCGCACAGAGTGG
                      ____________________________________________________________
consensus             GTAGGTCCGGCAGGTCGTTCTTGCCGACGACTCCGCGGTCGGGTGTTTCGCACAGAGTGG
 
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JMSF048G23-           CGGAGGCATCACGAGGGCTCAGACGCGGGGTGGCCGGGATTGCATCGAGGGTTTCAATGG
                      ____________________________________________________________
consensus             CGGAGGCATCACGAGGGCTCAGACGCGGGGTGGCCGGGATTGCATCGAGGGTTTCAATGG
 
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JMSF048G23-           GGTATGCGAGGGGGAAACCGAGCTCCATGTGACAATGTTTTCCTGTAAAAATCTGGTAGG
                      ____________________________________________________________
consensus             GGTATGCGAGGGGGAAACCGAGCTCCATGTGACAATGTTTTCCTGTAAAAATCTGGTAGG
 
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JMSF048G23-           ACTGAAGTTCTACTTGAGCATGCCTCCCGCAAAGCCAGATGGTCGGACTTCTTAACTTTG
                      ____________________________________________________________
consensus             ACTGAAGTTCTACTTGAGCATGCCTCCCGCAAAGCCAGATGGTCGGACTTCTTAACTTTG
 
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JMSF048G23-           AAGGAGGGGACGAATGTTTCTAGAGTAATAGTTGATGCGTGGTGTTCAGTGCTCAATGCG
                      ____________________________________________________________
consensus             AAGGAGGGGACGAATGTTTCTAGAGTAATAGTTGATGCGTGGTGTTCAGTGCTCAATGCG
 
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JMSF048G23-           ACGGAGAAACCTAGGAGATGGTGGGGGGGTGCCTACTCGCCTGTTTGTCTCGACGGCCGC
                      ____________________________________________________________
consensus             ACGGAGAAACCTAGGAGATGGTGGGGGGGTGCCTACTCGCCTGTTTGTCTCGACGGCCGC
 
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JMSF048G23-           TACGATTGCAGCTGGACTGACATCTTATGGCTAGTATTGGGGGAGACAAAACCAAGAGGC
rJMSF029B24+                                              TTGGGGGAGACAAAACCGAGAGGC
                      ____________________________________________________________
consensus             TACGATTGCAGCTGGACTGACATCTTATGGCTAGTATTGGGGGAGACAAAACCGAGAGGC
 
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JMSF048G23-           TACACTAAGAACTGCCTGTTCACCTGGAGTTCCATACGGCTTTTCCGACTTTGAGGTTAA
rJMSF029B24+          TCCACTAAGAACAGCCACTTCACCTGGAGTTCCAAATGGCTTTACCAACTTTGAGGTTAA
                      ____________________________________________________________
consensus             TCCACTAAGAACTGCCTGTTCACCTGGAGTTCCATATGGCTTTTCCGACTTTGAGGTTAA
 
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JMSF048G23-           GGTGTTTGATGGATGTGCAAACCCATACCTGGGTCTGGCTTCCATAATTCCTGCTGGGAT
rJMSF029B24+          GGTGTNTGATGGATGTGCAAACCCATTTCTCGGTCTGGCTTCCATCATTGCTGCTGGGAT
                      ____________________________________________________________
consensus             GGTGTTTGATGGATGTGCAAACCCATTTCTGGGTCTGGCTTCCATCATTGCTGCTGGGAT
 
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JMSF048G23-           TGACG                                                       
rJMSF029B24+          TGACGGTCTTCGCAGACGCTTAACTCTCCCCGAACCAGTTGATGAGAATCCCGAAAACCT
                      ____________________________________________________________
consensus             TGACGGTCTTCGCAGACGCTTAACTCTCCCCGAACCAGTTGATGAGAATCCCGAAAACCT
 
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rJMSF029B24+          TAAAGCAAGTATTCGACGACTACCAACATCTCTTGCAGAGTCAGTGGAAGCCCTGGAGAG
                      ____________________________________________________________
consensus             TAAAGCAAGTATTCGACGACTACCAACATCTCTTGCAGAGTCAGTGGAAGCCCTGGAGAG
 
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rJMSF029B24+          AAACGCAACATTCAAAGGTTTGATCAACGAGAAGCTCTTGATTGCCATACAAGCAGTTCG
                      ____________________________________________________________
consensus             AAACGCAACATTCAAAGGTTTGATCAACGAGAAGCTCTTGATTGCCATACAAGCAGTTCG
 
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rJMSF029B24+          AAAGGCTGAGATAAAGTATTACTCCGAAAATAATGACGCTTACAAGGAACTTATACACAA
                      ____________________________________________________________
consensus             AAAGGCTGAGATAAAGTATTACTCCGAAAATAATGACGCTTACAAGGAACTTATACACAA
 
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rJMSF029B24+          ATATTAACCCTCCTTGGTATTGCGAGAATTGTTTCAAGAAATAAAAGAGTATTTAGGTAG
                      ____________________________________________________________
consensus             ATATTAACCCTCCTTGGTATTGCGAGAATTGTTTCAAGAAATAAAAGAGTATTTAGGTAG
 
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rJMSF029B24+          GATGTTATGCGATACAATAGTACTACCATAACTAACTCTTGTCCAAGAAGCTACTGGGTA
                      ____________________________________________________________
consensus             GATGTTATGCGATACAATAGTACTACCATAACTAACTCTTGTCCAAGAAGCTACTGGGTA
 
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rJMSF029B24+          GGACTGGACAGCTAGTACTACCAACAAAAACAGTACGTACAACGTTTTCATGATCCAATG
                      ____________________________________________________________
consensus             GGACTGGACAGCTAGTACTACCAACAAAAACAGTACGTACAACGTTTTCATGATCCAATG