Contig 013998:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF024C21Sequence652006527 (2)ref|XP_002518870.1|5e-79conserved hypothetical protein [Ricinus communis] gb|EEF43403.1| conserved hypot745013998 (2)ref|XP_004161469.1|8e-130PREDICTED: ABC transporter F family member 3-like [Cucumis sativus]
JMSF028N01Sequence657006527 (2)ref|XP_002518870.1|1e-81conserved hypothetical protein [Ricinus communis] gb|EEF43403.1| conserved hypot723013998 (2)ref|XP_004161469.1|3e-123PREDICTED: ABC transporter F family member 3-like [Cucumis sativus]

Alignment

This contig is upended


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rJMSF024C21+                                    TGGGGGCCCAATATTGTTTAAGAATTTAAATTTT
rJMSF028N01+                                                                   TTT
                      ____________________________________________________________
consensus                                       TGGGGGCCCAATATTGTTTAAGAATTTAAATTTT
 
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rJMSF024C21+          GGAATAGATTTGGACAGTCGTGTAGCAATGGTTGGTCCAAATGGCATTGGAAAGTCAACC
rJMSF028N01+          GGAATAGATTTGGACAGTCGTGTAGCAATGGTTGGTCCAAATGGCATTGGAAAGTCAACC
                      ____________________________________________________________
consensus             GGAATAGATTTGGACAGTCGTGTAGCAATGGTTGGTCCAAATGGCATTGGAAAGTCAACC
 
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rJMSF024C21+          ATATTGAAACTAATTGCTGGTGAGCTTCAACCAACCTCAGGAACGGTTTTCCGTTCTGCT
rJMSF028N01+          ATATTGAAACTAATTGCTGGTGAGCTTCAACCAACCTCAGGAACGGTTTTCCGTTCTGCT
                      ____________________________________________________________
consensus             ATATTGAAACTAATTGCTGGTGAGCTTCAACCAACCTCAGGAACGGTTTTCCGTTCTGCT
 
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rJMSF024C21+          AAGGTCCGGATTGCTGTGTTTAGTCAACACCATGTTGATGGCTTAGACCTGTCTTCAAAT
rJMSF028N01+          AAGGTCCGGATTGCTGTGTTTAGTCAACACCATGTTGATGGCTTAGACCTGTCTTCAAAT
                      ____________________________________________________________
consensus             AAGGTCCGGATTGCTGTGTTTAGTCAACACCATGTTGATGGCTTAGACCTGTCTTCAAAT
 
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rJMSF024C21+          CCCTTGCTTTATATGATGCGCTGCTTCCCAGTAGTACCTGAACAGAAACTTCGTGCTCAC
rJMSF028N01+          CCCTTGCTTTATATGATGCGCTGCTTCCCAGGAGTACCTGAACAGAAACTTCGTGCTCAC
                      ____________________________________________________________
consensus             CCCTTGCTTTATATGATGCGCTGCTTCCCAGTAGTACCTGAACAGAAACTTCGTGCTCAC
 
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rJMSF024C21+          CTAGGTTCATTTGGTATCACTGGGAATCTTGCCCTTCAACCTATGTACACATTGTCTGGG
rJMSF028N01+          CTAGGTTCATTTGGTATCACTGGGAATCTTGCCCTTCAACCTATGTACACATTGTCTGGG
                      ____________________________________________________________
consensus             CTAGGTTCATTTGGTATCACTGGGAATCTTGCCCTTCAACCTATGTACACATTGTCTGGG
 
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rJMSF024C21+          GGTCAGAAAAGCAGAGTTGCATTTTCGAAAATAACCTTCAAAAAGCCTCACATTTTGCTT
rJMSF028N01+          GGTCAGAAAAGCAGAGTTGCATTTTCGAAAATAACCTTCAAAAAGCCTCACATTTTGCTT
                      ____________________________________________________________
consensus             GGTCAGAAAAGCAGAGTTGCATTTTCGAAAATAACCTTCAAAAAGCCTCACATTTTGCTT
 
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rJMSF024C21+          CTTGATGAGCCATCAAATCACTTGGATCTGGATGCCGTTGAGGCACTGATACAAGGACTA
rJMSF028N01+          CTTGATGAGCCATCAAATCACTTGGATCTGGATGCCGTTGAGGCACTGATACAAGGACTA
                      ____________________________________________________________
consensus             CTTGATGAGCCATCAAATCACTTGGATCTGGATGCCGTTGAGGCACTGATACAAGGACTA
 
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rJMSF024C21+          GTTTTGTTCCAAGGAGGTGTTCTGATGGTAAGTCACGATGAACATCTGATATCTGGAAGT
rJMSF028N01+          GTTTTGTTCCAAGGAGGTGTTCTGATGGTAAGTCACGATGAACATCTGATATCTGGAAGT
                      ____________________________________________________________
consensus             GTTTTGTTCCAAGGAGGTGTTCTGATGGTAAGTCACGATGAACATCTGATATCTGGAAGT
 
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rJMSF024C21+          GTAGAGCAGTTGTGGTCTGTATCGAAAGGCATTGTCACACCTTTTGATGGAACATTCCAG
rJMSF028N01+          GTAGAGCAGTTGTGGTCTGTATCGAAAGGCATTGTCACACCTTTTGATGGAACATTCCAG
                      ____________________________________________________________
consensus             GTAGAGCAGTTGTGGTCTGTATCGAAAGGCATTGTCACACCTTTTGATGGAACATTCCAG
 
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rJMSF024C21+          GATTACAAGAAAGTGGTCCAATCTTAATAGAAGGGTGTTATGTATTGCTTGCAAAAATGT
rJMSF028N01+          GATTACAAGAAAGTGGTCCAATCTTAATAGAAGGGTGTTATGTATTGCTTGCAAAAATGT
                      ____________________________________________________________
consensus             GATTACAAGAAAGTGGTCCAATCTTAATAGAAGGGTGTTATGTATTGCTTGCAAAAATGT
 
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rJMSF024C21+          TGTCTTTTCAAATGGGCTAATCCCCCCTGCTTAATAGGGAAGCGGGATGGAGTTTATCCA
rJMSF028N01+          TGTCTTTTCAAATGGGCTAATCCCCCCTGCTTAATAGGGAAGCGGGATGGAGTTTATCCA
                      ____________________________________________________________
consensus             TGTCTTTTCAAATGGGCTAATCCCCCCTGCTTAATAGGGAAGCGGGATGGAGTTTATCCA
 
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rJMSF024C21+          GCCTCCATTGAATTAGCAATTTACAGCATTTTTAATGCACTACCAGTTTTG         
rJMSF028N01+          GCCTCCATTGAATTAGCAATTTACAGCATTTTTAATGCACTACCAGTTTTGTATGCTCCA
                      ____________________________________________________________
consensus             GCCTCCATTGAATTAGCAATTTACAGCATTTTTAATGCACTACCAGTTTTGTATGCTCCA