Contig 013997:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF049D19Sequence634013271 (5)599013997 (6)dbj|BAP19108.1|7e-102elongation factor 1 gamma-like protein, partial [Ipomoea nil]
JMSF027F23Sequence647010736 (5)ref|XP_011074970.1|9e-114PREDICTED: elongation factor 1-gamma-like [Sesamum indicum]735013997 (6)dbj|BAP19108.1|4e-101elongation factor 1 gamma-like protein, partial [Ipomoea nil]
JMSF028K23Sequence655010736 (5)ref|XP_011074970.1|3e-117PREDICTED: elongation factor 1-gamma-like [Sesamum indicum]665013997 (6)dbj|BAP19108.1|7e-101elongation factor 1 gamma-like protein, partial [Ipomoea nil]
JMSF029A08Sequence648010736 (5)ref|XP_011074970.1|2e-116PREDICTED: elongation factor 1-gamma-like [Sesamum indicum]750013997 (6)dbj|BAP19108.1|1e-101elongation factor 1 gamma-like protein, partial [Ipomoea nil]
JMSF043G11Sequence771010736 (5)ref|XP_011074970.1|2e-127PREDICTED: elongation factor 1-gamma-like [Sesamum indicum]826013997 (6)gb|KDO42760.1|2e-103hypothetical protein CISIN_1g014592mg [Citrus sinensis]
JMSF046O09Sequence683010736 (5)ref|XP_011074970.1|3e-116PREDICTED: elongation factor 1-gamma-like [Sesamum indicum]574013997 (6)dbj|BAP19108.1|5e-94elongation factor 1 gamma-like protein, partial [Ipomoea nil]

Alignment

This contig is upended


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rJMSF028K23+                                                                GGAACC
                      ____________________________________________________________
consensus                                                                   GGAACC
 
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rJMSF029A08+                                                  GAAGAAGCACCAAAGCCCAA
rJMSF043G11+                                                  GAAGAAGCACCAAAGCCCAA
rJMFF049D19+                                       TAGGAGAAGAGGAAGAAGCACCAAAGCCCAA
rJMSF027F23+              AAGAAAGAAGAGCCAAAATCTGAGGTAGGAGAAGAGGAAGAAGCACCAAAGCCCAA
rJMSF028K23+          ACCAAAGAAAGAAGAGCCAAAATCTGAGGTAGGAGAAGAGGAAGAAGCACCAAAGCCCAA
                      ____________________________________________________________
consensus             ACCAAAGAAAGAAGAGCCAAAATCTGAGGTAGGAGAAGAGGAAGAAGCACCAAAGCCCAA
 
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rJMSF029A08+          GCCAAAGAATCCTCTTGATCTTTTGCCTCCCAGTAAGATGATTCTAGATGAATGG-AAGA
rJMSF043G11+          GCCAAAGAATCCTCTTGATCTTTTGCCTCCCAGTAAGATGATTCTAGATGAATGG-AAGA
rJMFF049D19+          GCCAAAGAATCCTCTTGATCTTTTGCCTCCCAGTAAGATGATTCTAGATGAATGG-AAGA
rJMSF046O09+                                   CCTCCCAGTAAGATGATTCTAGATGAATGGAAAGA
rJMSF027F23+          GCCAAAGAATCCTCTTGATCTTTTGCCTCCCAGTAAGATGATTCTAGATGAATGG-AAGA
rJMSF028K23+          GCCAAAGAATCCTCTTGATCTTTTGCCTCCCAGTAAGATGATTCTAGATGAATGG-AAGA
                      ____________________________________________________________
consensus             GCCAAAGAATCCTCTTGATCTTTTGCCTCCCAGTAAGATGATTCTAGATGAATGG-AAGA
 
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rJMSF029A08+          GGCTCTACTCAAACACTAAGACCAACTTCCAGGAATTTGCCATCAAAGGTTTTTGGGATA
rJMSF043G11+          GGCTCTACTCAAACACTAAGACCAACTTCCAGGAATTTGCCATCAAAGGTTTTTGGGATA
rJMFF049D19+          GGCTCTACTCAAACACTAAGACCAACTTCCAGGAATTTGCCATCAAAGGTTTTTGGGATA
rJMSF046O09+          GGCTCTACTCAAACACTAAGACCAACTTCCAGGAATTTGCCATCAAAGGTTTTTGGGATA
rJMSF027F23+          GGCTCTACTCAAACACTAAGACCAACTTCCAGGAATTTGCCATCAAAGGTTTTTGGGATA
rJMSF028K23+          GGCTCTACTCAAACACTAAGACCAACTTCCAGGAATTTGCCATCAAAGGTTTTTGGGATA
                      ____________________________________________________________
consensus             GGCTCTACTCAAACACTAAGACCAACTTCCAGGAATTTGCCATCAAAGGTTTTTGGGATA
 
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rJMSF029A08+          TGTATGATCCCGAGGGGTACTCACTCTGGTTCTGTGATTACAAGTACAATGATGAGAACA
rJMSF043G11+          TGTATGATCCCGAGGGGTACTCACTCTGGTTCTGTGATTACAAGTACAATGATGAGAACA
rJMFF049D19+          TGTATGATCCCGAGGGGTACTCACTCTGGTTCTGTGATTACAAGTACAATGATGAGAACA
rJMSF046O09+          TGTATGATCCCGAGGGGTACTCACTCTGGTTCTGTGATTACAAGTACAATGATGAGAACA
rJMSF027F23+          TGTATGATCCCGAGGGGTACTCACTCTGGTTCTGTGATTACAAGTACAATGATGAGAACA
rJMSF028K23+          TGTATGATCCCGAGGGGTACTCACTCTGGTTCTGTGATTACAAGTACAATGATGAGAACA
                      ____________________________________________________________
consensus             TGTATGATCCCGAGGGGTACTCACTCTGGTTCTGTGATTACAAGTACAATGATGAGAACA
 
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rJMSF029A08+          CTGTTTCTTTTGTAACATCGAACAAGGTGAGCGGTTTTCTTCAGAGAATGGATCTGGCAC
rJMSF043G11+          CTGTTTCTTTTGTAACATCGAACAAGGTGAGCGGTTTTCTTCAGAGAATGGATCTGGCAC
rJMFF049D19+          CTGTTTCTTTTGTAACATCGAACAAGGTGAGCGGTTTTCTTCAGAGAATGGATCTGGCAC
rJMSF046O09+          CTGTTTCTTTTGTAACATCGAACAAGGTGAGCGGTTTTCTTCAGAGAATGGATCTGGCAC
rJMSF027F23+          CTGTTTCTTTTGTAACATCGAACAAGGTGAGCGGTTTTCTTCAGAGAATGGATCTGGCAC
rJMSF028K23+          CTGTTTCTTTTGTAACATCGAACAAGGTGAGCGGTTTTCTTCAGAGAATGGATCTGGCAC
                      ____________________________________________________________
consensus             CTGTTTCTTTTGTAACATCGAACAAGGTGAGCGGTTTTCTTCAGAGAATGGATCTGGCAC
 
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rJMSF029A08+          GCAAGTATGCATTTGGCAAAATGTTGGTGATTGGTTCACAGCCTCCCTTCAAGGTGAAGG
rJMSF043G11+          GCAAGTATGCATTTGGCAAAATGTTGGTGATTGGTTCACAGCCTCCCTTCAAGGTGAAGG
rJMFF049D19+          GCAAGTATGCATTTGGCAAAATGTTGGTGATTGGTTCACAGCCTCCCTTCAAGGTGAAGG
rJMSF046O09+          GCAAGTATGCATTTGGCAAAATGTTGGTGATTGGTTCACAGCCTCCCTTCAAGGTGAAGG
rJMSF027F23+          GCAAGTATGCATTTGGCAAAATGTTGGTGATTGGTTCACAGCCTCCCTTCAAGGTGAAGG
rJMSF028K23+          GCAAGTATGCATTTGGCAAAATGTTGGTGATTGGTTCACAGCCTCCCTTCAAGGTGAATG
                      ____________________________________________________________
consensus             GCAAGTATGCATTTGGCAAAATGTTGGTGATTGGTTCACAGCCTCCCTTCAAGGTGAAGG
 
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rJMSF029A08+          GGTTGTGGCTCTTCCGTGGCAAAGAAATTCCAAAGTTCATTATGGATGAAGTCTATGACA
rJMSF043G11+          GGTTGTGGCTCTTCCGTGGCAAAGAAATTCCAAAGTTCATTATGGATGAAGTCTATGACA
rJMFF049D19+          GGTTGTGGCTCTTCCGTGGCAAAGAAATTCCAAAGTTCATTATGGATGAAGTCTATGACA
rJMSF046O09+          GGTTGTGGCTCTTCCGTGGCAAAGAAATTCCAAAGTTCATTATGGATGAAGTCTATGACA
rJMSF027F23+          GGTTGTGGCTCTTCCGTGGCAAAGAAATTCCAAAGTTCATTATGGATGAAGTCTATGACA
rJMSF028K23+          GGTTGTGGCTCTTCCGTGGCAAAGAAATTCCAAAGTTCATTATGGATGAAGTCTATGACA
                      ____________________________________________________________
consensus             GGTTGTGGCTCTTCCGTGGCAAAGAAATTCCAAAGTTCATTATGGATGAAGTCTATGACA
 
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rJMSF029A08+          TGGAGCTGTATGAGTGGAGGGAAGCAGACATCAACGATGAAGCTCAGAAAGAGCGTGTCA
rJMSF043G11+          TGGAGCTGTATGAGTGGAGGGAAGCAGACATCAACGATGAAGCTCAGAAAGAGCGTGTCA
rJMFF049D19+          TGGAGCTGTATGAGTGGAGGGAAGCAGACATCAACGATGAAGCTCAGAAAGAGCGTGTCA
rJMSF046O09+          TGGAGCTGTATGAGTAGAGGGAAGCAGACATCAACGATGAAGCTCAGAAAGAGCGTGTCA
rJMSF027F23+          TGGAGCTGTATGAGTGGAGGGAAGCAGACATCAACGATGAAGCTCAGAAAGAGCGTGTCA
rJMSF028K23+          TGGAGCTGTATGAGTGGAGGGAAGCAGACATCAACGATGAAGCTCAGAAAGAGCGTGTCA
                      ____________________________________________________________
consensus             TGGAGCTGTATGAGTGGAGGGAAGCAGACATCAACGATGAAGCTCAGAAAGAGCGTGTCA
 
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rJMSF029A08+          ACCAGATGATTGTGGACCACGAGCCTTTTGAAGGTGAGGATCTTTTGGATGCTAAGTGTT
rJMSF043G11+          ACCAGATGATTGTGGACCACGAGCCTTTTGAAGGTGAGGATCTTTTGGATGCTAAGTGTT
rJMFF049D19+          ACCAGATGATTGTGGACCACGAGCCTTTTGAAGGTGAGGATCTTTTGGATGCTAAGTGTT
rJMSF046O09+          ACCAGATGATTGTGGACCACGAGCCTTTTGAAGGTGAGGATCTTTTGGATGCTAAGTGTT
rJMSF027F23+          ACCAGATGATTGTGGACCACGAGCCTTTTGAAGGTGAGGATCTTTTGGATGCTAAGTGTT
rJMSF028K23+          ACCAGATGATTGTGGACCACGAGCCTTTTGAAGGTGAGGATCTTTTGGATGCTAAGTGTT
                      ____________________________________________________________
consensus             ACCAGATGATTGTGGACCACGAGCCTTTTGAAGGTGAGGATCTTTTGGATGCTAAGTGTT
 
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rJMSF029A08+          TC                                                          
rJMSF043G11+          TC                                                          
rJMFF049D19+          TCCCCTTATCTCTAGTTTCTAGTGCTACTTAATTTTGTCCTGCAAGTTACTATTTCCTTC
rJMSF046O09+          TCCCCTTATCTCTAGTTTCTAGTGCTACTTAATTTTGTCCTGCAAGTTACTATTTCCTTC
rJMSF027F23+          TC                                                          
rJMSF028K23+          TCCCCTTATCTCTAGTTTCTAGTGCTACTTAATTTTGTCCTGCAAGTTACTATTTCCTTC
                      ____________________________________________________________
consensus             TCCCCTTATCTCTAGTTTCTAGTGCTACTTAATTTTGTCCTGCAAGTTACTATTTCCTTC
 
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rJMFF049D19+          TTCATTTATAATGTGATTTCTTTCACCCC                               
rJMSF046O09+          TTCATTTATAATGTGATTTCTTTCACCCCAAACAATTACTGCTCTGTGATTCAAATTTA 
rJMSF028K23+          TTCATTTATAATGTGATTTCTTTCACCCCAAACAATTACTGCTCTGTGATTCAAATTTAT
                      ____________________________________________________________
consensus             TTCATTTATAATGTGATTTCTTTCACCCCAAACAATTACTGCTCTGTGATTCAAATTTAT