Contig 013994:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS169G03Sequence615013994 (2)ref|XP_007046806.1|2e-89Ubiquitin-conjugating enzyme 16 [Theobroma cacao] gb|EOX90963.1| Ubiquitin-conju
JMSF028F22Sequence618000796 (16)emb|CDP10497.1|2e-34unnamed protein product [Coffea canephora]668013994 (2)ref|XP_007046806.1|4e-80Ubiquitin-conjugating enzyme 16 [Theobroma cacao] gb|EOX90963.1| Ubiquitin-conju

Alignment

This contig is upended


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JMFS169G03-                      AACGACGTCGTCGTCGTCAACACGGCGCCCCCAGCCATGACCAGCTCCG
                      ____________________________________________________________
consensus                        AACGACGTCGTCGTCGTCAACACGGCGCCCCCAGCCATGACCAGCTCCG
 
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JMFS169G03-           CCACTTCCTCGCGCAAGACCTTGAGCAAGATAGCTTCTAACATACTCCAGAAAGAGCTGG
                      ____________________________________________________________
consensus             CCACTTCCTCGCGCAAGACCTTGAGCAAGATAGCTTCTAACATACTCCAGAAAGAGCTGG
 
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JMFS169G03-           CGGAGTGGCAGGTCAATCCACCCTCAGGTTTCAAACACAAGGTCACTGATAATCTTCAAA
                      ____________________________________________________________
consensus             CGGAGTGGCAGGTCAATCCACCCTCAGGTTTCAAACACAAGGTCACTGATAATCTTCAAA
 
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JMFS169G03-           GGTGGGTGGTTGAAGTGAATGGAGCTCCTGGTACTCTGTATGCCAATGAGACGTATCAGC
                      ____________________________________________________________
consensus             GGTGGGTGGTTGAAGTGAATGGAGCTCCTGGTACTCTGTATGCCAATGAGACGTATCAGC
 
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JMFS169G03-           TTCAAGTAGATTTTCCTGAGCATTACCCTATGGAAGCTCCTCAGGTGATATTTTTGTCTC
                      ____________________________________________________________
consensus             TTCAAGTAGATTTTCCTGAGCATTACCCTATGGAAGCTCCTCAGGTGATATTTTTGTCTC
 
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JMFS169G03-           CAGCTCCACTGCACCCACATATCTACAGCAATGGCCATATTTGTTTAGATATTTTGTACG
rJMSF028F22+                                                        AGATATTTTGTACG
                      ____________________________________________________________
consensus             CAGCTCCACTGCACCCACATATCTACAGCAATGGCCATATTTGTTTAGATATTTTGTACG
 
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JMFS169G03-           ACTCATGGTCCCCTGCGATGACTGTTAGTTCTATTTGCATCAGCATTCTGTCCATGCTAT
rJMSF028F22+          ACTCATGGTCCCCTGCGATGACTGTTAGTTCTATTTGCATCAGCATTCTGTCCATGCTAT
                      ____________________________________________________________
consensus             ACTCATGGTCCCCTGCGATGACTGTTAGTTCTATTTGCATCAGCATTCTGTCCATGCTAT
 
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JMFS169G03-           CTAGCTCTACTGTGAAGCAACGCCCGGAAGATAATGATCGGTATGTAAGGAATTGTAAAA
rJMSF028F22+          CTAGCTCTACTGTGAAGCAACGCCCGGAAGATAATGATCGGTATGTAAGGAATTGTAAAA
                      ____________________________________________________________
consensus             CTAGCTCTACTGTGAAGCAACGCCCGGAAGATAATGATCGGTATGTAAGGAATTGTAAAA
 
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JMFS169G03-           ATGGCCGATCACCCAAGGAAACGAGGTGGTGGTTTCATGATGATAAAGTGTAGCAACAAG
rJMSF028F22+          ATGGCCGATCACCCAAGGAAACGAGGTGGTGGTTTCATGATGATAAAGTGTAGCAACAAG
                      ____________________________________________________________
consensus             ATGGCCGATCACCCAAGGAAACGAGGTGGTGGTTTCATGATGATAAAGTGTAGCAACAAG
 
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JMFS169G03-           TGTCAGTGTCGTTTGATTCATCTCGTCAAGGATATAGCTTAGCTGCTTTACCATATTTCA
rJMSF028F22+          TGTCAGTGTCGTTTGATTCATCTCGTCAAGGATATAGCTTAGCTGCTTTACCATATTTCA
                      ____________________________________________________________
consensus             TGTCAGTGTCGTTTGATTCATCTCGTCAAGGATATAGCTTAGCTGCTTTACCATATTTCA
 
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JMFS169G03-           AATCAGAATCAGAATCAGAAAAAATT                                  
rJMSF028F22+          AATCAGAATCAGAATCAGAAAAAATTGTGGAAGTCCATTGTTGTCAACAAACAAACCACT
                      ____________________________________________________________
consensus             AATCAGAATCAGAATCAGAAAAAATTGTGGAAGTCCATTGTTGTCAACAAACAAACCACT
 
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rJMSF028F22+          ATCTGGTGCAGATTCACCTATTGCTGTCTGATGTATGTAAATGGAGACAAGTTGTACCTT
                      ____________________________________________________________
consensus             ATCTGGTGCAGATTCACCTATTGCTGTCTGATGTATGTAAATGGAGACAAGTTGTACCTT
 
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rJMSF028F22+          TCCCGTTTCTGCTGTGTGAACCAACCTTATGTATGTTCTACAACTTCACTCTTGTGAAAT
                      ____________________________________________________________
consensus             TCCCGTTTCTGCTGTGTGAACCAACCTTATGTATGTTCTACAACTTCACTCTTGTGAAAT