clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF028E18 | Sequence | 351 | 009381 (5) | ref|XP_009771645.1| | 3e-48 | PREDICTED: nucleobase-ascorbate transporter 1 [Nicotiana sylvestris] | 652 | 013992 (6) | ref|XP_006469619.1| | 4e-121 | PREDICTED: nucleobase-ascorbate transporter 1-like isoform X3 [Citrus sinensis] |
JMFF028G01 | Sequence | 459 | 009381 (5) | ref|XP_009771645.1| | 1e-47 | PREDICTED: nucleobase-ascorbate transporter 1 [Nicotiana sylvestris] | 707 | 013992 (6) | ref|XP_006469619.1| | 2e-131 | PREDICTED: nucleobase-ascorbate transporter 1-like isoform X3 [Citrus sinensis] |
JMFF037J21 | Sequence | 134 | 013992 (6) | gb|AFP58408.1| | 8e-20 | XUP, partial [Carica papaya] gb|AFP58409.1| XUP, partial [Carica papaya] gb|AFP5 | |||||
JMSF028A11 | Sequence | 675 | 009381 (5) | ref|XP_009771645.1| | 2e-92 | PREDICTED: nucleobase-ascorbate transporter 1 [Nicotiana sylvestris] | 769 | 013992 (6) | ref|XP_006469619.1| | 1e-73 | PREDICTED: nucleobase-ascorbate transporter 1-like isoform X3 [Citrus sinensis] |
JMSF033C10 | Sequence | 676 | 009381 (5) | ref|XP_009771645.1| | 4e-93 | PREDICTED: nucleobase-ascorbate transporter 1 [Nicotiana sylvestris] | 745 | 013992 (6) | ref|XP_006469619.1| | 8e-75 | PREDICTED: nucleobase-ascorbate transporter 1-like isoform X3 [Citrus sinensis] |
JMSF038E09 | Sequence | 666 | 009381 (5) | ref|XP_009771645.1| | 2e-88 | PREDICTED: nucleobase-ascorbate transporter 1 [Nicotiana sylvestris] | 895 | 013992 (6) | ref|XP_006469619.1| | 2e-118 | PREDICTED: nucleobase-ascorbate transporter 1-like isoform X3 [Citrus sinensis] |
This contig is upended
. : . : . : . : . : . :
rJMFF037J21+ GTNTAGCAATTGCCACTCCACCTCCAGCCTACGTACTTAGTCGGGGGATT
rJMFF028G01+ GTCGGGGGATT
____________________________________________________________
consensus GTNTAGCAATTGCCACTCCACCTCCAGCCTACGTACTTAGTCGGGGGATT
. : . : . : . : . : . :
rJMFF037J21+ GGTTGGCAGGGAATAGGTGTTTTACTTGATGGTCTTTTTGGAACGGGCACTGGGTCCACT
rJMFF028E18+ GGGCACTGGGTCCACT
rJMFF028G01+ GGTNGGCAGGGAATAGGTGTTTTACTTGATGGTCTTTTTGGAACGGGCACTGGGTCCACT
rJMSF038E09+ GGGCACTGGGTCCACT
____________________________________________________________
consensus GGTTGGCAGGGAATAGGTGTTTTACTTGATGGTCTTTTTGGAACGGGCACTGGGTCCACT
. : . : . : . : . : . :
rJMFF037J21+ GTATCTGTGGAAAATGTGGGACTC
rJMFF028E18+ GTATCTGTGGAAAATGTGGGACTCCTTGGACTGACTCGGGTTGGAAGCCGTAGAGTTGTT
rJMFF028G01+ GTATCTGTGGAAAATGTGGGACTCCTTGGACTGACTCGGGTTGGAAGCCGTAGAGTTGTT
rJMSF038E09+ GTATCTGTGGAAAATGTGGGACTCCTTGGACTGACTCGGGTTGGAAGCCGTAGAGTTGTT
____________________________________________________________
consensus GTATCTGTGGAAAATGTGGGACTCCTTGGACTGACTCGGGTTGGAAGCCGTAGAGTTGTT
. : . : . : . : . : . :
rJMFF028E18+ CAGATTTCTGCAGGCTTCATGATATTCTTCTCGATGTTAGGGAAATTTGGAGCTGTTTTT
rJMFF028G01+ CAGATTTCTGCAGGCTTCATGATATTCTTCTCGATGTTAGGGAAATTTGGAGCTGTTTTT
rJMSF038E09+ CAGATTTCTGCAGGCTTCATGATATTCTTCTCGATGTTAGGGAAATTTGGAGCTGTTTTT
____________________________________________________________
consensus CAGATTTCTGCAGGCTTCATGATATTCTTCTCGATGTTAGGGAAATTTGGAGCTGTTTTT
. : . : . : . : . : . :
rJMFF028E18+ GCGTCTATACCTTTCGTGATATATGCTGCATTATACTGTGTTCTGTTTGGCCTTGTAGGC
rJMFF028G01+ GCGTCTATACCTTTCGTGATATATGCTGCATTATACTGTGTTCTGTTTGGCCTTGTAGGC
rJMSF038E09+ GCGTCTATACCTTTCGTGATATATGCTGCATTATACTGTGTTCTGTTTGGCCTTGTAGGC
rJMSF033C10+ GC
rJMSF028A11+ TTTCGTGATATATGCTGCATTATACTGTGTTCTGNTTGGCCTTGTAGGC
____________________________________________________________
consensus GCGTCTATACCTTTCGTGATATATGCTGCATTATACTGTGTTCTGTTTGGCCTTGTAGGC
. : . : . : . : . : . :
rJMFF028E18+ TCTGTAGGCTTGTCGTTTCTTCAGTTCACAAACATGAACTGTATGCGCAATCTCCTCATC
rJMFF028G01+ TCTGTAGGCTTGTCGTTTCTTCAGTTCACAAACATGAACTGTATGCGCAATCTCCTCATC
rJMSF038E09+ TCTGTAGGCTTGTCGTTTCTTCAGTTCACAAACATGAACTGTATGCGCAATCTCCTCATC
rJMSF033C10+ TCTGTAGGCTTGTCGTTTCTTCAGTTCACAAACATGAACTGTATGCGCAATCTCCTCATC
rJMSF028A11+ TCTGTAGGCTTGTCGNTTCTTCAGTTCACAAACATGAACTGTATGCGCAATCTCCTCATC
____________________________________________________________
consensus TCTGTAGGCTTGTCGTTTCTTCAGTTCACAAACATGAACTGTATGCGCAATCTCCTCATC
. : . : . : . : . : . :
rJMFF028E18+ ACGGGCCTTTCACTCTTCCTAGGAATCTCGATTCCTCAGTTCTTTAATGAATACTGGTCC
rJMFF028G01+ ACGGGCCTTTCACTCTTCCTAGGAATCTCGATTCCTCAGTTCTTTAATGAATACTGGTCC
rJMSF038E09+ ACGGGCCTTTCACTCTTCCTAGGAATCTCGATTCCTCAGTTCTTTAATGAATACTGGTCC
rJMSF033C10+ ACGGGCCTTTCACTCTTCCTAGGAATCTCGATTCCTCAGTTCTTTAATGAATACTGGTCC
rJMSF028A11+ ACGGGCCTTTCACTCTTCCTAGGAATCTCGATTCCTCAGTTCTTTAATGAATACTGGTCC
____________________________________________________________
consensus ACGGGCCTTTCACTCTTCCTAGGAATCTCGATTCCTCAGTTCTTTAATGAATACTGGTCC
. : . : . : . : . : . :
rJMFF028E18+ CAAGGTCGCCATGGCCTCGTTCACACCAATGCCGGATGGTTCAATGCATTCATCAACACG
rJMFF028G01+ CAAGGTCGCCATGGCCTCGTTCACACCAATGCCGGATGGTTCAATGCATTCATCAACACG
rJMSF038E09+ CAAGGTCGCCATGGCCTCGTTCACACCAATGCCGGATGGTTCAATGCATTCATCAACACG
rJMSF033C10+ CAAGGTCGCCATGGCCTCGTTCACACCAATGCCGGATGGTTCAATGCATTCATCAACACG
rJMSF028A11+ CAAGGTCGCCATGGCCTCGTTCACACCAATGCCGGATGGTTCAATGCATTCATCAACACG
____________________________________________________________
consensus CAAGGTCGCCATGGCCTCGTTCACACCAATGCCGGATGGTTCAATGCATTCATCAACACG
. : . : . : . : . : . :
rJMFF028E18+ ATATTCTCGTCCCCGCCAACAGTGGGGTTGATCGTGGCGGTGTTCTTGGACAACACGCTG
rJMFF028G01+ ATATTCTCGTCCCCGCCAACAGTGGGGTTGATCGTGGCGGTGTTCTTGGACAACACGCTG
rJMSF038E09+ ATATTCTCGTCCCCGCCAACAGTGGGGTTGATCGTGGCGGTGTTCTTGGACAACACGCTG
rJMSF033C10+ ATATTCTCGTCCCCGCCAACAGTGGGGTTGATCGTGGCGGTGTTCTTGGACAACACGCTG
rJMSF028A11+ ATATTCTCGTCCCCGCCAACAGTGGGGTTGATCGTGGCGGTGTTCTTGGACAACACGCTG
____________________________________________________________
consensus ATATTCTCGTCCCCGCCAACAGTGGGGTTGATCGTGGCGGTGTTCTTGGACAACACGCTG
. : . : . : . : . : . :
rJMFF028E18+ GAAGTGGAAAAATCGAAGAAAGACAGAGGGATGCCATGGTGGGTGAAGTTCAGAACATTC
rJMFF028G01+ GAAGTGGAAAAATCGAAGAAAGACAGAGGGATGCCATGGTGGGTGAAGTTCAGAACATTC
rJMSF038E09+ GAAGTGGAAAAATCGAAGAAAGACAGAGGGATGCCATGGTGGGTGAAGTTCAGAACATTC
rJMSF033C10+ GAAGTGGAAAAATCGAAGAAAGACAGAGGGATGCCATGGTGGGTGAAGTTCAGAACATTC
rJMSF028A11+ GAAGTGGAAAAATCGAAGAAAGACAGAGGGATGCCATGGTGGGTGAAGTTCAGAACATTC
____________________________________________________________
consensus GAAGTGGAAAAATCGAAGAAAGACAGAGGGATGCCATGGTGGGTGAAGTTCAGAACATTC
. : . : . : . : . : . :
rJMFF028E18+ AGAGGTGACAATCGAAACGAGGAATTCTACACTTTGCCGTTTAACCTCAACAGATTCTTT
rJMFF028G01+ AGAGGTGACAATCGAAACGAGGAATTCTACACTTTGCCGTTTAACCTCAACAGATTCTTT
rJMSF038E09+ AGAGGTGACAATCGAAACGAGGAATTCTACACTTTGCCGTTTAACCTCAACAGATTCTTT
rJMSF033C10+ AGAGGTGACAATCGAAACGAGGAATTCTACACTTTGCCGTTTAACCTCAACAGATTCTTT
rJMSF028A11+ AGAGGTGACAATCGAAACGAGGAATTCTACACTTTGCCGTTTAACCTCAACAGATTCTTT
____________________________________________________________
consensus AGAGGTGACAATCGAAACGAGGAATTCTACACTTTGCCGTTTAACCTCAACAGATTCTTT
. : . : . : . : . : . :
rJMFF028E18+ CCACCTACATAGCCAGATAGAAACCTTGGAAGAAAAAGAACAGAGCGGTAGTTACTGTCT
rJMFF028G01+ CCACCTACATAGCCAGATAGAAACCTTGGAAGAAAAAGAACAGAGCGGTAGTTACTGTCT
rJMSF038E09+ CCACCTACATAGCCAGATAGAAACCTTGGAAGAAAAAGAACAGAGCGGTAGTTACTGTCT
rJMSF033C10+ CCACCTACATAGCCAGATAGAAACCTTGGAAGAAAAAGAACAGAGCGGTAGTTACTGTCT
rJMSF028A11+ CCACCTACATAGCCAGATAGAAACCTTGGAAGAAAAAGAACAGAGCGGTAGTTACTGTCT
____________________________________________________________
consensus CCACCTACATAGCCAGATAGAAACCTTGGAAGAAAAAGAACAGAGCGGTAGTTACTGTCT
. : . : . : . : . : . :
rJMFF028E18+ TAGGCAAATTCAAATTCAATTAACA
rJMFF028G01+ TAGGCAAATTCAAATTCAATTAACATGATATTCAAA
rJMSF038E09+ TAGGCAAATTCAAATTCAATTAACATGATATTCAAATGATGTTTGGTTGAGCTTAATTCA
rJMSF033C10+ TAGGCAAATTCAAATTCAATTAACATGATATTCAAATGATGTTTGGTTGAGCTTAATTCA
rJMSF028A11+ TAGGCAAATTCAAATTCAATTAACATGATATTCAAATGATGTTTGGTTGAGCTTAATTCA
____________________________________________________________
consensus TAGGCAAATTCAAATTCAATTAACATGATATTCAAATGATGTTTGGTTGAGCTTAATTCA
. : . : . : . : . : . :
rJMSF038E09+ TCTCCTGTCCAGTTCCATATCCTAGCTAGACAGATAACTGATGAAATCCTAATTGGTTTT
rJMSF033C10+ TCTCCTGTCCAGTTCCATATCCTAGCTAGACAGATAACTGATGAAATCCTAATTGGTTTT
rJMSF028A11+ TCTCCTGTCCAGTTCCATATCCTAGCTAGACAGATAACTGATGAAATCCTAATTGGTTTT
____________________________________________________________
consensus TCTCCTGTCCAGTTCCATATCCTAGCTAGACAGATAACTGATGAAATCCTAATTGGTTTT
. : . : . : . : . : . :
rJMSF038E09+ GTCGCCTCAACATTGGGTTTTTTTGGGTTCTTGTGGGGTAGCAAGGTCTTCATGATAGGG
rJMSF033C10+ GTCGCCTCAACATTGGGTTTTTTTGGGTTCTTGTGGGGTAGCAAGGTCTTCATGATAGGG
rJMSF028A11+ GTCGCCTCAACATTGGGTTTTTTTGGGTTCTTGTGGGGTAGCAAGGTCTTCATGATAGGG
____________________________________________________________
consensus GTCGCCTCAACATTGGGTTTTTTTGGGTTCTTGTGGGGTAGCAAGGTCTTCATGATAGGG
. : . : . : . : . : . :
rJMSF038E09+ AATGTAGAGCACTAGAGCTTACTGCAGATTGATTGATGCTTTGTAGGATTTAAATTTCTA
rJMSF033C10+ AATGTAGAGCACTAGAGCTTACTGCAGATTGATTGATGCTTTGTAGGATTTAAATTTCTA
rJMSF028A11+ AATGTAGAGCACTAGAGCTTACTGCAGATTGATTGATGCTTTGTAGGATTTAAATTTCTA
____________________________________________________________
consensus AATGTAGAGCACTAGAGCTTACTGCAGATTGATTGATGCTTTGTAGGATTTAAATTTCTA
. : . : . : . : . : . :
rJMSF038E09+ TAAAGATAACAATGATGTAGAGATCTCAA
rJMSF033C10+ TAAAGATAACAATGATGTAGAGATCTCAATGTGTTCTTTTAGGCCCATATTCAACTTTT
rJMSF028A11+ TAAAGATAACAATGATGTAGAGATCTCAATGTGTTCTTTTAGGCCCATATTCAACTTTTA
____________________________________________________________
consensus TAAAGATAACAATGATGTAGAGATCTCAATGTGTTCTTTTAGGCCCATATTCAACTTTTA