Contig 013990:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF027F11Sequence626013990 (2)ref|XP_009598388.1|56.2PREDICTED: uncharacterized protein LOC104094217 [Nicotiana tomentosiformis] ref|715013990 (2)ref|XP_009790366.1|80.5PREDICTED: uncharacterized protein LOC104237838 [Nicotiana sylvestris] ref|XP_00

Alignment

This contig is upended


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JMSF027F11-                                   GGGAAATCTCCTCAAATTCTCTCTCTAGGTCCTTGG
                      ____________________________________________________________
consensus                                     GGGAAATCTCCTCAAATTCTCTCTCTAGGTCCTTGG
 
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JMSF027F11-           CCGAACAGCCATCATCCGCTGCTGTATAACCGCAACANCGCAGAACCNACCTCCCCAAAA
                      ____________________________________________________________
consensus             CCGAACAGCCATCATCCGCTGCTGTATAACCGCAACANCGCAGAACCNACCTCCCCAAAA
 
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JMSF027F11-           CCCCAAGATTTTGTAATCCTTTCGGCCGCTGATTTTCCTCAAAATTANTATTTTCTCACC
                      ____________________________________________________________
consensus             CCCCAAGATTTTGTAATCCTTTCGGCCGCTGATTTTCCTCAAAATTANTATTTTCTCACC
 
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JMSF027F11-           GCACATTTTGTATATTGTTTGCGTTTAATTTGTGTTCTGTGTAATCTATATATGAAATGG
                      ____________________________________________________________
consensus             GCACATTTTGTATATTGTTTGCGTTTAATTTGTGTTCTGTGTAATCTATATATGAAATGG
 
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JMSF027F11-           GAAAGAGAAAGAGGAAAGCTGACCTTAACAAGACCCCTCCTCCTCCAGACCTTATGCCAC
                      ____________________________________________________________
consensus             GAAAGAGAAAGAGGAAAGCTGACCTTAACAAGACCCCTCCTCCTCCAGACCTTATGCCAC
 
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JMSF027F11-           CACCACTTGGAATGGATTCAATAACAAAACAGAAGCTTTCGCATCAAAGTGAAGGCNGTG
                      ____________________________________________________________
consensus             CACCACTTGGAATGGATTCAATAACAAAACAGAAGCTTTCGCATCAAAGTGAAGGCNGTG
 
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JMSF027F11-           AAATAAAGCCGCCTTTCATGTCCATTATAGATACCACCGACAATTCTGTTAAGGTAACAA
                      ____________________________________________________________
consensus             AAATAAAGCCGCCTTTCATGTCCATTATAGATACCACCGACAATTCTGTTAAGGTAACAA
 
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JMSF027F11-           ANGGACATCAGCTATCTGNTGATCATCATCATCATCGCATATTAGCCGAGCTATATCATT
rJMSF027F11+               CATCAGCTATCTGCTGATCATCATCATCATCGCATATTAGNCGAGCTATATCANT
                      ____________________________________________________________
consensus             ANGGACATCAGCTATCTGCTGATCATCATCATCATCGCATATTAGCCGAGCTATATCATT
 
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JMSF027F11-           GAGGCATCATCGTCAATTTTATGGCCGCCATTATTCTCGACGGAANTCCACCAACAATGC
rJMSF027F11+          GAGGCATCATCGTCAATTTTATGGCCGCCATTATTCTCGACGGAACTCCACCAACAATGC
                      ____________________________________________________________
consensus             GAGGCATCATCGTCAATTTTATGGCCGCCATTATTCTCGACGGAACTCCACCAACAATGC
 
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JMSF027F11-           TGCTGCGGCATCAACTTCCCATGACAAGCTTTCTCCATCTTATGTTGACAAAACATCCTT
rJMSF027F11+          NGCTGCGGCATCAACTTCCCATGACAAGCTTTCTCCATCTTANGTTGACAAAACATCCTT
                      ____________________________________________________________
consensus             TGCTGCGGCATCAACTTCCCATGACAAGCTTTCTCCATCTTATGTTGACAAAACATCCTT
 
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JMSF027F11-           CAAGCTGGCTAGTAAATACCGTCCAGATTCTGGGTCAGGGGACCATTCAG          
rJMSF027F11+          CAAGCTGGCTAGTAAATACCGTCCAGATTCTGGGTCAGGGGACCATTCAGATGCAGGGAA
                      ____________________________________________________________
consensus             CAAGCTGGCTAGTAAATACCGTCCAGATTCTGGGTCAGGGGACCATTCAGATGCAGGGAA
 
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rJMSF027F11+          ACTGATATGCAGCTTATGCCAGAAGTTCATGAGGAAAAAACCCTGTATTCNTGAAACCGT
                      ____________________________________________________________
consensus             ACTGATATGCAGCTTATGCCAGAAGTTCATGAGGAAAAAACCCTGTATTCNTGAAACCGT
 
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rJMSF027F11+          CGTACATTCCAGCGATCACTCGGTGGCAGCAGTTNTAAGTTGCGGTCACGTTTACCATNC
                      ____________________________________________________________
consensus             CGTACATTCCAGCGATCACTCGGTGGCAGCAGTTNTAAGTTGCGGTCACGTTTACCATNC
 
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rJMSF027F11+          CGATTGCTTGGAGGAGAGGACGCCCCATGAAGATAGATGGGACCCACCCTGTCCCCAGTG
                      ____________________________________________________________
consensus             CGATTGCTTGGAGGAGAGGACGCCCCATGAAGATAGATGGGACCCACCCTGTCCCCAGTG
 
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rJMSF027F11+          TTCACCATTACTATCAGGTNGATAGATTCTAGAGGGACGGACGGACAGGATTTAACTATA
                      ____________________________________________________________
consensus             TTCACCATTACTATCAGGTNGATAGATTCTAGAGGGACGGACGGACAGGATTTAACTATA
 
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rJMSF027F11+          CAGGNTACCATTTCTCTGNCTGACATCGAAGATTAATAATCCAGTAGTAGGTATAGGTCC
                      ____________________________________________________________
consensus             CAGGNTACCATTTCTCTGNCTGACATCGAAGATTAATAATCCAGTAGTAGGTATAGGTCC
 
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rJMSF027F11+          GTTAAGTTAGTTTTCGTNTAAGATAGAGTGGTCATGAACGTACTAACGCGACGTAGCCGA
                      ____________________________________________________________
consensus             GTTAAGTTAGTTTTCGTNTAAGATAGAGTGGTCATGAACGTACTAACGCGACGTAGCCGA
 
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rJMSF027F11+          GGTAAATGTGTTTGTTTTTTACTGTGTTTTGCAAGTTGCTTAGGTGAAAATAACTTTGGA
                      ____________________________________________________________
consensus             GGTAAATGTGTTTGTTTTTTACTGTGTTTTGCAAGTTGCTTAGGTGAAAATAACTTTGGA
 
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rJMSF027F11+          ATTGTTTGTTAGACTTTGTTGTGTGAATAGTTTGTGTTGCTTCCTTTAACTGCCTCAACA
                      ____________________________________________________________
consensus             ATTGTTTGTTAGACTTTGTTGTGTGAATAGTTTGTGTTGCTTCCTTTAACTGCCTCAACA