Contig 013989:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF027E10Sequence654002275 (7)emb|CAA71893.1|7e-19putative carbamoyl phosphate synthetase, large chain [Nicotiana tabacum]782013989 (2)emb|CDP18860.1|5e-109unnamed protein product [Coffea canephora]
JMSF034G19Sequence632002275 (7)emb|CAA71893.1|6e-20putative carbamoyl phosphate synthetase, large chain [Nicotiana tabacum]707013989 (2)emb|CDP18860.1|2e-90unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF027E10+ CC
                      ____________________________________________________________
consensus CC
 
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rJMSF027E10+ GAGACATGTATCCGTGAAAGAGGCCGTTCTCCCGTTCGAGAAATTCCAAGGCTGCGATGT
                      ____________________________________________________________
consensus GAGACATGTATCCGTGAAAGAGGCCGTTCTCCCGTTCGAGAAATTCCAAGGCTGCGATGT
 
. : . : . : . : . : . :
rJMSF034G19+ CGAGATGCGCAGCACCGGCGAGGTAATGGGTATATACTTCGAGGCTTC
rJMSF027E10+ GCTCTTTGGCCCCGAGATGCGCAGCACCGGCGAGGTAATGGGTATATACTTCGAGGCTTC
                      ____________________________________________________________
consensus GCTCTTTGGCCCCGAGATGCGCAGCACCGGCGAGGTAATGGGTATATACTTCGAGGCTTC
 
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rJMSF034G19+ GGTCGCTTTTGCCAAAGCGCAGATAGCTGCGGGCCAGAGATTGCCGCACTCGGGGACTCT
rJMSF027E10+ GGTCGCTTTTGCCAAAGCGCAGATAGCTGCGGGCCAGAGATTGCCGCACTCGGGGACTCT
                      ____________________________________________________________
consensus GGTCGCTTTTGCCAAAGCGCAGATAGCTGCGGGCCAGAGATTGCCGCACTCGGGGACTCT
 
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rJMSF034G19+ GTTCCTGAGCTTAAATGACCTCACGAAGCCCCAACTCGCCACCATAGGTCGAGCTTTTGC
rJMSF027E10+ GTTCCTGAGCTTAAATGACCTCACGAAGCCCCAACTCGCCACCATAGGTCGAGCTTTTGC
                      ____________________________________________________________
consensus GTTCCTGAGCTTAAATGACCTCACGAAGCCCCAACTCGCCACCATAGGTCGAGCTTTTGC
 
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rJMSF034G19+ GGACATCGGGTTCCAAATAGTCGCCACTTCTGGAACCGCACACGTGCTCGAACTAGAAAG
rJMSF027E10+ GGACATCGGGTTCCAAATAGTCGCCACTTCTGGAACTGCACACGTGCTCGAACTAGAAAG
                      ____________________________________________________________
consensus GGACATCGGGTTCCAAATAGTCGCCACTTCTGGAACTGCACACGTGCTCGAACTAGAAAG
 
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rJMSF034G19+ CATTCCGGTGGAGAGGGTGCTGAAGATGCACGAAGGGAGGCCTCACGCCGGTGACATGAT
rJMSF027E10+ CATTCCGGTGGAGAGGGTGCTGAAGATGCACGAAGGGAGGCCTCACGCCGGTGACATGAT
                      ____________________________________________________________
consensus CATTCCGGTGGAGAGGGTGCTGAAGATGCACGAAGGGAGGCCTCACGCCGGTGACATGAT
 
. : . : . : . : . : . :
rJMSF034G19+ CGCAAATGGGCAGATCCAGTTGATGGTGATCACTAGCTCGGGCGACTCGCTCGACCAGAT
rJMSF027E10+ CGCAAATGGGCAGATCCAGTTGATGGTGATCACTAGCTCGGGCGACTCGCTCGACCAGAT
                      ____________________________________________________________
consensus CGCAAATGGGCAGATCCAGTTGATGGTGATCACTAGCTCGGGCGACTCGCTCGACCAGAT
 
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rJMSF034G19+ TGACGGGCGCAAACTGAGGAGGATGGCGCTTGCGTACAAGATCCCGGTGATCACCACCGT
rJMSF027E10+ TGACGGGCGCAAACTGAGGAGGATGGCGCTTGCGTACAAGATCCCGGTGATCACCACCGT
                      ____________________________________________________________
consensus TGACGGGCGCAAACTGAGGAGGATGGCGCTTGCGTACAAGATCCCGGTGATCACCACCGT
 
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rJMSF034G19+ TGCCGGGGCGTTGGCGACTGCCAAGGCAATCAAGAGCTTGAAGCAGAACAAGATCGAGAT
rJMSF027E10+ TGCCGGGGCGTTGGCGACTGCCAAGGCAATCAAGAGCTTGAAGCAGAACAAGATCGAGAT
                      ____________________________________________________________
consensus TGCCGGGGCGTTGGCGACTGCCAAGGCAATCAAGAGCTTGAAGCAGAACAAGATCGAGAT
 
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rJMSF034G19+ GTCGGCTCTTCAGGACTACTTCAACATTCCCACGGAAGCAGAGAGTGGCAAAAACCTGCA
rJMSF027E10+ GTCGGCTCTTCAGGACTACTTCAACATTCCCACGGAAGCAGAGAGTGGCAAAAACCTGCA
                      ____________________________________________________________
consensus GTCGGCTCTTCAGGACTACTTCAACATTCCCACGGAAGCAGAGAGTGGCAAAAACCTGCA
 
. : . : . : . : . : . :
rJMSF034G19+ GTCTGTATCCTCCATTTCTTCTTCTTCTTCTAGCTGATTAGACATGAGAGAAAAAGTGAA
rJMSF027E10+ GTCTGTATCCTCCATTTCTTCTTCTTCTTCTAGCTGATTAGACATGAGAGAAAAAGTGAA
                      ____________________________________________________________
consensus GTCTGTATCCTCCATTTCTTCTTCTTCTTCTAGCTGATTAGACATGAGAGAAAAAGTGAA
 
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rJMSF034G19+ ATTCTTGTTTTTATGTTCCCTGCGGTTTTGATCTTATTGCTATCAAATTCCATTCCAGAC
rJMSF027E10+ ATTCTTGTTTTTATGTTCCCTGCGGTTTTGATCTTATTGCTATCAAATTCCATTCCAGAC
                      ____________________________________________________________
consensus ATTCTTGTTTTTATGTTCCCTGCGGTTTTGATCTTATTGCTATCAAATTCCATTCCAGAC
 
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rJMSF034G19+ TCTCTTGACTTATTGGGTTTGTTAAGGATGTATTCTTCCTTTTCATTGCTGCTTGTAGA
rJMSF027E10+ TCTCTTGACTTATTGGGTTTGTTAAGGATGTATTCTTCCTTTTCATTGCTGCTTGTAGAT
                      ____________________________________________________________
consensus TCTCTTGACTTATTGGGTTTGTTAAGGATGTATTCTTCCTTTTCATTGCTGCTTGTAGAT