Contig 013985:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF026L10Sequence659007913 (3)ref|XP_006482077.1|5e-31PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial758013985 (4)ref|XP_002522167.1|7e-86pentatricopeptide repeat-containing protein, putative [Ricinus communis] gb|EEF
JMSF026N15Sequence638007913 (3)ref|XP_006482077.1|1e-27PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial723013985 (4)ref|XP_002522167.1|4e-95pentatricopeptide repeat-containing protein, putative [Ricinus communis] gb|EEF
JMSF031E07Sequence599013985 (4)ref|XP_002322619.2|3e-86hypothetical protein POPTR_0016s03540g [Populus trichocarpa] gb|EEF04380.2| hypo750013985 (4)ref|XP_002522167.1|2e-84pentatricopeptide repeat-containing protein, putative [Ricinus communis] gb|EEF

Alignment

This contig is upended


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JMSF031E07-                                                            GGAAAATCGTT
                      ____________________________________________________________
consensus                                                              GGAAAATCGTT
 
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JMSF031E07-           GGGCATGCCAAATTTTACTCCCACTCTATGCTTCCCTTGGCATGGCTGAGGACGTCAGCA
rJMSF026N15+                                       GCTTCCCTTGGCATGGCTGAGGACGTCAGCA
                      ____________________________________________________________
consensus             GGGCATGCCAAATTTTACTCCCACTCTATGCTTCCCTTGGCATGGCTGAGGACGTCAGCA
 
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JMSF031E07-           GACTCTGGCAAGTTTGCAAATCCAATCCAAAGGTAGATGAGTGTGTGGCCGGCATTCAAG
rJMSF026N15+          GACTCTGGCAAGTTTGCAAATCCAATCCAAAGGTAGATGAGTGTGTGGCCGGCATTCAAG
rJMSF031E07+                                      AAAGGTAGATGAGTGTGTGGCCGGCATTCAAG
rJMSF026L10+                                      AAAGGTAGATGAGTGTGTGGCCGGCATTCAAG
                      ____________________________________________________________
consensus             GACTCTGGCAAGTTTGCAAATCCAATCCAAAGGTAGATGAGTGTGTGGCCGGCATTCAAG
 
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JMSF031E07-           CCTGGGGAAGTTTGAAGAAAATTGAGGAGGCAGAAGATGTCTTTGATATATTGGTAAACA
rJMSF026N15+          CCTGGGGAAGTTTGAAGAAAATTGAGGAGGCAGAAGATGTCTTTGATATATTGGTAAACA
rJMSF031E07+          CCTGGGGAAGTTTGAAGAAAATTGAGGAGGCAGAAGATGTCTTTGATATATTGGTAAACA
rJMSF026L10+          CCTGGGGAAGTTTGAAGAAAATTGAGGAGGCAGAAGATGTCTTTGATATATTGGTAAACA
                      ____________________________________________________________
consensus             CCTGGGGAAGTTTGAAGAAAATTGAGGAGGCAGAAGATGTCTTTGATATATTGGTAAACA
 
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JMSF031E07-           AATACAAAAAGGCGAAAAATCCCGTCTCAAAAGGTTATTATGCTTTATTGAGTGCTTATG
rJMSF026N15+          AATACAAAAAGGCGAAAAATCCCGTCTCAAAAGGTTATTATGCTTTATTGAGTGCTTATG
rJMSF031E07+          AATACAAAAAGGCGAAAAATCCCGTCTCAAAAGGTTATTATGCTTTATTGAGTGCTTATG
rJMSF026L10+          AATACAAAAAGGCGAAAAATCCCGTCTCAAAAGGTTATTATGCTTTATTGAGTGCTTATG
                      ____________________________________________________________
consensus             AATACAAAAAGGCGAAAAATCCCGTCTCAAAAGGTTATTATGCTTTATTGAGTGCTTATG
 
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JMSF031E07-           CAGATAATAAGATGTTGGTCAAAGGAAAGGAGCTTGTGAAGCAGATGGGAGAAAGTGATT
rJMSF026N15+          CAGATAATAAGATGTTGGTCAAAGGAAAGGAGCTTGTGAAGCAGATGGGAGAAAGTGATT
rJMSF031E07+          CAGATAATAAGATGTTGGTCAAAGGAAAGGAGCTTGTGAAGCAGATGGGAGAAAGTGATT
rJMSF026L10+          CAGATAATAAGATGTTGGTCAAAGGAAAGGAGCTTGTGAAGCAGATGGGAGAAAGTGATT
                      ____________________________________________________________
consensus             CAGATAATAAGATGTTGGTCAAAGGAAAGGAGCTTGTGAAGCAGATGGGAGAAAGTGATT
 
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JMSF031E07-           TCCCCGTTGGGCCACTAACTTGGGATGCAGTTGTTAAGCTTTATTGCAACGCTGGAGAAG
rJMSF026N15+          TCCCCGTTGGGCCACTAACTTGGGATGCAGTTGTTAAGCTTTATTGCAACGCTGGAGAAG
rJMSF031E07+          TCCCCGTTGGGCCACTAACTTGGGATGCAGTTGTTAAGCTTTATTGCAACGCTGGAGAAG
rJMSF026L10+          TCCCCGTTGGGCCACTAACTTGGGATGCAGTTGTTAAGCTTTATTGCAACGCTGGAGAAG
                      ____________________________________________________________
consensus             TCCCCGTTGGGCCACTAACTTGGGATGCAGTTGTTAAGCTTTATTGCAACGCTGGAGAAG
 
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JMSF031E07-           TGGAAAAAGCCGATTCTATATTGAAAAAGGCTGGAGAGAAGGGCCAAAGAAAGCCATTGT
rJMSF026N15+          TGGAAAAAGCCGATTCTATATTGAAAAAGGCTGGAGAGAAGGGCCAAAGAAAGCCATTGT
rJMSF031E07+          TGGAAAAAGCCGATTCTATATTGAAAAAGGCTGGAGAGAAGGGCCAAAGAAAGCCATTGT
rJMSF026L10+          TGGAAAAAGCCGATTCTATATTGAAAAAGGCTGGAGAGAAGGGCCAAAGAAAGCCATTGT
                      ____________________________________________________________
consensus             TGGAAAAAGCCGATTCTATATTGAAAAAGGCTGGAGAGAAGGGCCAAAGAAAGCCATTGT
 
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JMSF031E07-           TGAGATCTTATATTACTATCATGGAGGAATACGCGAAGAGAGGCGACATACATAATTCTG
rJMSF026N15+          TGAGATCTTATATTACTATCATGGAGGAATACGCGAAGAGAGGCGACATACATAATTCTG
rJMSF031E07+          TGAGATCTTATATTACTATCATGGAGGAATACGCGAAGAGAGGCGACATACATAATTCTG
rJMSF026L10+          TGAGATCTTATATTACTATCATGGAGGAATACGCGAAGAGAGGCGACATACATAATTCTG
                      ____________________________________________________________
consensus             TGAGATCTTATATTACTATCATGGAGGAATACGCGAAGAGAGGCGACATACATAATTCTG
 
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JMSF031E07-           AGAAGATATTCCACAGAATGAGACAGGTCGGCTACACATCTCGTCTTAAACAGTTCCAAA
rJMSF026N15+          AGAAGATATTCCACAGAATGAGACAGGTCGGCTACACATCTCGTCTTAAACAGTTCCAAA
rJMSF031E07+          AGAAGATATTCCACAGAATGAGACAGGTCGGCTACACATCTCGTCTTAAACAGTTCCAAA
rJMSF026L10+          AGAAGATATTCCACAGAATGAGACAGGTCGGCTACACATCTCGTCTTAAACAGTTCCAAA
                      ____________________________________________________________
consensus             AGAAGATATTCCACAGAATGAGACAGGTCGGCTACACATCTCGTCTTAAACAGTTCCAAA
 
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JMSF031E07-           CACTCATTCAGGCCTATATAAATGCCAAGCTTCCTGCTTATGGGATGA            
rJMSF026N15+          CACTCATTCAGGCCTATATAAATGCCAAGCTTCCTGCTTATGGGATGAGTGAGAGATTGA
rJMSF031E07+          CACTCATTCAGGCCTATATAAATGCCAAGCTTCCTGCTTATGGGATGAGTGAGAGATTGA
rJMSF026L10+          CACTCATTCAGGCCTATATAAATGCCAAGCTTCCTGCTTATGGGATGAGTGAGAGATTGA
                      ____________________________________________________________
consensus             CACTCATTCAGGCCTATATAAATGCCAAGCTTCCTGCTTATGGGATGAGTGAGAGATTGA
 
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rJMSF026N15+          AGGCTGATAACATATTCCCAAATAAAGCATTGGCTGGCATGTTGGCTCAGGTTGATGGAT
rJMSF031E07+          AGGCTGATAACATATTCCCAAATAAAGCATTGGCTGGCATGTTGGCTCAGGTTGATGGAT
rJMSF026L10+          AGGCTGATAACATATTCCCAAATAAAGCATTGGCTGGCATGTTGGCTCAGGTTGATGGAT
                      ____________________________________________________________
consensus             AGGCTGATAACATATTCCCAAATAAAGCATTGGCTGGCATGTTGGCTCAGGTTGATGGAT
 
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rJMSF026N15+          TCAGAAAGACAGCAGTGTCAGAGATATTGGATTGATCATTTACATTTACATGTAGGTTTA
rJMSF031E07+          TCAGAAAGACAGCAGTGTCAGAGATATTGGATTGATCATTTACATTTACATGTAGGTTTA
rJMSF026L10+          TCAGAAAGACAGCAGTGTCAGAGATATTGGATTGATCATTTACATTTACATGTAGGTTTA
                      ____________________________________________________________
consensus             TCAGAAAGACAGCAGTGTCAGAGATATTGGATTGATCATTTACATTTACATGTAGGTTTA
 
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rJMSF026N15+          TTGAGAACTGTTATTATGATTTTGCAGTGTT                             
rJMSF031E07+          TTGAGAACTGTTATTATGATTTTGCAGTGTTTGGACTTGAGATGTTTAATATGTTTCATG
rJMSF026L10+          TTGAGAACTGTTATTATGATTTTGCAGTGTTTGGACTTGAGATGTTTAATATGTTTCATG
                      ____________________________________________________________
consensus             TTGAGAACTGTTATTATGATTTTGCAGTGTTTGGACTTGAGATGTTTAATATGTTTCATG
 
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rJMSF031E07+          TTTTTCCTGCAAGAATCTGATCACATAATTTTACTGCCTAGAAACTACAAAAGT      
rJMSF026L10+          TTTTTCCTGCAAGAATCTGATCACATAATTTTACTGCCTAGAAACTACAAAAGTTGAGGG
                      ____________________________________________________________
consensus             TTTTTCCTGCAAGAATCTGATCACATAATTTTACTGCCTAGAAACTACAAAAGTTGAGGG