Contig 013981:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF019B14Sequence520013427 (7)ref|XP_009788433.1|2e-48PREDICTED: SCY1-like protein 2 [Nicotiana sylvestris]678013981 (4)emb|CDP20126.1|1e-11unnamed protein product [Coffea canephora]
JMSF026B06Sequence643013427 (7)ref|XP_009788433.1|4e-81PREDICTED: SCY1-like protein 2 [Nicotiana sylvestris]694013981 (4)emb|CDP20126.1|8e-10unnamed protein product [Coffea canephora]
JMSF031H18Sequence654013427 (7)ref|XP_009788433.1|4e-82PREDICTED: SCY1-like protein 2 [Nicotiana sylvestris]582013981 (4)
JMSF040P05Sequence614013427 (7)ref|XP_009788433.1|4e-83PREDICTED: SCY1-like protein 2 [Nicotiana sylvestris]695013981 (4)emb|CDP20126.1|6e-06unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF019B14+          CTCTACCGTTGCTTNTAAACCTNTTAACAATGGCACATNGGCCTCGCCTTTCAACATGCA
rJMSF040P05+                         TAAACCTTTTAACAANGGCACATTGGCCTNGCCTTTCAACNTGCN
rJMSF026B06+                                    ACAATGGCACATNGGCCTNGCCTTTCAACATGCA
                      ____________________________________________________________
consensus             CTCTACCGTTGCTTNTAAACCTTTTAACAATGGCACATTGGCCTCGCCTTTCAACATGCA
 
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rJMSF019B14+          TGGTTCCAGTAACAGCACAAGCAATCCTNATCCGTTGGATAGCC-TTTCCTCATGGTNTN
rJMSF040P05+          TGGNTCCNGTAACAGCCCNAGCNATNCTAATCCGTTGGATAGCC-TTTCCTCATGGTNTN
rJMSF026B06+          TGGNTCCAGTAACAGCACAAGCAATNCTAATNCGTTGGATAGCCTTTTCCTCATGGTCTN
                      ____________________________________________________________
consensus             TGGTTCCAGTAACAGCACAAGCAATCCTAATCCGTTGGATAGCC-TTTCCTCATGGTCTN
 
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rJMSF019B14+          TTGGCNCCTCAANGTTTACAGAGCCCTTGAAACCGAACCAAGGGAATTNCCCGNTGAATT
rJMSF040P05+          TTGGCNCCTCAATGTNTACNGAGCCCNTGAAACCGNACCNAGGGAATTNCNCGNTGAATT
rJMSF031H18+                CCTCAATGTTTACAGNGCCCTTGAAACCGAACCNAGGGAANTCCCCGCTGAATT
rJMSF026B06+          TTGGCNCCTCAANGTTTACAGAGCCCTTGAAACCGAACCNAGGGAATTNCCCGNTGAATT
                      ____________________________________________________________
consensus             TTGGCNCCTCAATGTTTACAGAGCCCTTGAAACCGAACCAAGGGAATTCCCCGCTGAATT
 
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rJMSF019B14+          TNGGNGGTTTNAGCGGTGGNGGGGCTGTTAATTCCCNGAATTNTNTTGGNTACNTGAAAC
rJMSF040P05+          TNGGNGGTNTNAGCGGNGGNGGGGCTGTTAATTCCCNGAATTTTNTTGGGTACNTGAAAC
rJMSF031H18+          TNGGTGGTTTNAGCGGTGGTGGGGNTGTTAATTNCCNGAATTTTNTTGGGTACNTGAAAC
rJMSF026B06+          TNGGTGGTTTNAGCGGTGGNGGGGCTGTTAATTNCCNGAATTTTNTTGGGTACNTGAAAC
                      ____________________________________________________________
consensus             TNGGTGGTTTNAGCGGTGGTGGGGCTGTTAATTCCCNGAATTTTNTTGGGTACNTGAAAC
 
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rJMSF019B14+          AAANTCAAGGNTTTTTTNCGAAACCCNTGGATNTTGGTTCCNTTTTNTCCTCAAACAAAA
rJMSF040P05+          NAACTCAAGGNTTTTTTNCGAAACCCNTGGNTNTTGGTTCCNTTTTNTCCTCAAACAAAA
rJMSF031H18+          NAANTCAAGGNTTTTTTNCGNAACCCNNGGNTNTTGGTTCCNTTTTNTCCTCAAACAAAA
rJMSF026B06+          AAANTCAAGGNTTTTTTNCGAAACCCNTGGNTTTTGGTTCCNTTTTNTCCTCAAACAAAA
                      ____________________________________________________________
consensus             AAACTCAAGGNTTTTTTNCGAAACCCNTGGATTTTGGTTCCNTTTTNTCCTCAAACAAAA
 
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rJMSF019B14+          CCGAGCAAACTGCNCCAAGGCTAGCTCCNCCCCCATCAACTGCCATCGGTAGAGGAAGGG
rJMSF040P05+          CCGNGCNAANTGCNCCNAGGCTAGCTCCNCCCCCNTCAACTGCCNTCGGTAGAGGAAGGG
rJMSF031H18+          CCGNGCAAANTGCNCCNAGGCTAGCTCCNCCCCCNTCAANTGCCNTCGGTAGAGGAAGGG
rJMSF026B06+          CCGNGCNAANTGCNCCNAGGCTAGCTCCNCCCCCNTCAACTGCCATCGGTAGAGGAAGGG
                      ____________________________________________________________
consensus             CCGAGCAAACTGCNCCAAGGCTAGCTCCNCCCCCATCAACTGCCATCGGTAGAGGAAGGG
 
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rJMSF019B14+          GACGAGGGCGAGGAAATCAAGGGCAACTATCNCGGCCTAGCCNAGCAAAGCCTTGGNCAG
rJMSF040P05+          GNCGAGGGCGAGGAAATCAAGGGCAACTATCCCGGCCTAGCCNAGCAAAGCCTNGGNCAG
rJMSF031H18+          GACGAGGGCGAGGAAATCAAGGGCAACTNTCNCGGCCTAGCCNAGCAAAGCCTTGGNCAG
rJMSF026B06+          GACGAGGGCGAGGAAATCAAGGGCAANTATCNCGGCCTAGCCNAGCAAAGCCTTGGNCAG
                      ____________________________________________________________
consensus             GACGAGGGCGAGGAAATCAAGGGCAACTATCCCGGCCTAGCCNAGCAAAGCCTTGGNCAG
 
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rJMSF019B14+          AGCAGCCNCCCCTGTTGGACTTGCTTTAGTGGAACAACCCCGNTGCCCCGGGNGTTAAAA
rJMSF040P05+          AGCAGCCNCCCCNGTTGGNCTTGCTTTAGNGGNACAACCCCGCTGCCCCGGGAGTTAAAA
rJMSF031H18+          NGCNGCCNCCCCTGTTGGNCTTGCTTTAGNGGAACAACCCCGNTGCCCCGGGNGTTAAAA
rJMSF026B06+          AGCNGCCNCCCCTGTTGGNCTTGCTTTAGNGGNACAACCCCGNTGCCCCGGGNGTTAAAA
                      ____________________________________________________________
consensus             AGCAGCCNCCCCTGTTGGACTTGCTTTAGTGGAACAACCCCGCTGCCCCGGGAGTTAAAA
 
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rJMSF019B14+          AAAAAAAGCGGTACATATCAATCAATCTCTTGTATTTTGCGCATCCCACGCGGTCGGTGA
rJMSF040P05+          AAAAAAAGCGGTACATATCAATCAATCTCTTGTATTTTGCGCATCCCACGCGGTCGGTGA
rJMSF031H18+          AAAAAAAGCGGTACATATCAATCAATCTCTTGTATTTTGCGCATCCCACGCGGTCGGTGA
rJMSF026B06+          AAAAAAAGCGGTACATATCAATCAATCTCTTGTATTTTGCGCATCCCACGCGGTCGGTGA
                      ____________________________________________________________
consensus             AAAAAAAGCGGTACATATCAATCAATCTCTTGTATTTTGCGCATCCCACGCGGTCGGTGA
 
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rJMSF019B14+          CTTGCGTTTTACTGGAACGGAGGTTTAAAAAAATGTGTTCATAACGCCACTGGCTCGCAC
rJMSF040P05+          CTTGCGTTTTACTGGAACGGAGGTTTAAAAAAATGTGTTCATAACGCCACTGGCTCGCAC
rJMSF031H18+          CTTGCGTTTTACTGGAACGGAGGTTTAAAAAAATGTGTTCATAACGCCACTGGCTCGCAC
rJMSF026B06+          CTTGCGTTTTACTGGAACGGAGGTTTAAAAAAATGTGTTCATAACGCCACTGGCTCGCAC
                      ____________________________________________________________
consensus             CTTGCGTTTTACTGGAACGGAGGTTTAAAAAAATGTGTTCATAACGCCACTGGCTCGCAC
 
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rJMSF019B14+          AGTTTTTGCCTTGAGAATGAAGCTTGTTGTAGAATAGTCCTATTGATACTTTGTAGAGAG
rJMSF040P05+          AGTTTTTGCCTTGAGAATGAAGCTTGTTGTAGAATAGTCCTATTGATACTTTGTAGAGAG
rJMSF031H18+          AGTTTTTGCCTTGAGAATGAAGCTTGTTGTAGAATAGTCCTATTGATACTTTGTAGAGAG
rJMSF026B06+          AGTTTTTGCCTTGAGAATGAAGCTTGTTGTAGAATAGTCCTATTGATACTTTGTAGAGAG
                      ____________________________________________________________
consensus             AGTTTTTGCCTTGAGAATGAAGCTTGTTGTAGAATAGTCCTATTGATACTTTGTAGAGAG
 
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rJMSF019B14+          TATAGTATGCC                                                 
rJMSF040P05+          TATAGTATGCCGAACTTTTACGTTTTGTGGGAGTTTTCATGTTAT               
rJMSF031H18+          TATAGTATGCCGAACTTTTACGTTTTGTGGGAGTTTTCATGTTAT               
rJMSF026B06+          TATAGTATGCCGAACTTTTACGTTTTGTGGGAGTTTTCATGTTATTATTATGTTTTGCGT
                      ____________________________________________________________
consensus             TATAGTATGCCGAACTTTTACGTTTTGTGGGAGTTTTCATGTTATTATTATGTTTTGCGT