| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF016E08 | Sequence | 294 | 013978 (6) | 748 | 013978 (6) | ref|XP_010061830.1| | 3e-72 | PREDICTED: U6 snRNA-associated Sm-like protein LSm1 [Eucalyptus grandis] gb|KCW | |||
| JMSF025L08 | Sequence | 655 | 013978 (6) | gb|EYU45893.1| | 5e-52 | hypothetical protein MIMGU_mgv1a016267mg [Erythranthe guttata] | 776 | 013978 (6) | ref|XP_010061830.1| | 3e-72 | PREDICTED: U6 snRNA-associated Sm-like protein LSm1 [Eucalyptus grandis] gb|KCW |
| JMSF042F24 | Sequence | 654 | 013978 (6) | gb|EYU45893.1| | 5e-52 | hypothetical protein MIMGU_mgv1a016267mg [Erythranthe guttata] | 760 | 013978 (6) | ref|XP_010061830.1| | 3e-72 | PREDICTED: U6 snRNA-associated Sm-like protein LSm1 [Eucalyptus grandis] gb|KCW |
This contig is upended
. : . : . : . : . : . :
JMSF016E08- GAGAAGTGCTAGGGGAAGCTTGGCCTTCTATTTC
JMSF042F24- GAGAAGTGCTAGGGGAAGCTTGGCCTTCTATTTC
JMSF025L08- GAGAAGTGCTAGGGGAAGCTTGGCCTTCTATTTC
____________________________________________________________
consensus GAGAAGTGCTAGGGGAAGCTTGGCCTTCTATTTC
. : . : . : . : . : . :
JMSF016E08- TCTCTCGCCAGATTTCTGTAGTAAATACTCCGTGGCTCCGTGCGTCACAACGGTAGTTAG
JMSF042F24- TCTCTCGCCAGATTTCTGTAGTAAATACTCCGTGGCTCCGTGCGTCACAACGGTAGTTAG
JMSF025L08- TCTCTCGCCAGATTTCTGTAGTAAATACTCCGTGGCTCCGTGCGTCACAACGGTAGTTAG
____________________________________________________________
consensus TCTCTCGCCAGATTTCTGTAGTAAATACTCCGTGGCTCCGTGCGTCACAACGGTAGTTAG
. : . : . : . : . : . :
JMSF016E08- GGTTTTCCCAGATCTGAATCAAAGCGCAAAAGTCAGCAAGTTTCTCCCTCCAACCCTTTT
JMSF042F24- GGTTTTCCCAGATCTGAATCAAAGCGCAAAAGTCAGCAAGTTTCTCCCTCCAACCCTTTT
JMSF025L08- GGTTTTCCCAGATCTGAATCAAAGCGCAAAAGTCAGCAAGTTTCTCCCTTCAACCCTTTT
____________________________________________________________
consensus GGTTTTCCCAGATCTGAATCAAAGCGCAAAAGTCAGCAAGTTTCTCCCTCCAACCCTTTT
. : . : . : . : . : . :
JMSF016E08- TCCGTTTGGGTTTTAGCATTGGACTTTTTCAAGATTCAAGAACTGGGGTTTTGGGGAGCA
JMSF042F24- TCCGTTTGGGTTTTAGCATTGGACTTTTTCAAGATTCAAGAACTGGGGTTTTGGGGAGCA
JMSF025L08- TCCGTTTGGGTTTTAGCATTGGACTTTTTCAAGATTCAAGAACTGGGGTTTTGGGGAGCA
rJMSF016E08+ AAGATTCAAGAACTGGGGTTTTGGGGAGCA
rJMSF042F24+ TTCAAGAACTGGGGTTTTGGGGAGCA
rJMSF025L08+ TTTAGCATTGGACTTTTTCAAGATTCAAGAACTGGGGTTTTGGGGAGCA
____________________________________________________________
consensus TCCGTTTGGGTTTTAGCATTGGACTTTTTCAAGATTCAAGAACTGGGGTTTTGGGGAGCA
. : . : . : . : . : . :
JMSF016E08- ATATAAGCCGAGGGTAATCCGAGCTGCCAATGCAATTTGGATATAAATTGGAGAAGTTTT
JMSF042F24- ATATAAGCCGAGGGTAATCCGAGCTGCCAATGCAATTTGGATATAAATTGGAGAAGTTTT
JMSF025L08- ATATAAGCCGAGGGTAATCCGAGCTGCCAATGCAATTTGGATATAAATTGGAGAAGTTTT
rJMSF016E08+ ATATAAGCCGAGGGTAATCCGAGCTGCCAATGCAATTTGGATATAAATTGGAGAAGTTTT
rJMSF042F24+ ATATAAGCCGAGGGTAATCCGAGCTGCCAATGCAATTTGGATATAAATTGGAGAAGTTTT
rJMSF025L08+ ATATAAGCCGAGGGTAATCCGAGCTGCCAATGCAATTTGGATATAAATTGGAGAAGTTTT
____________________________________________________________
consensus ATATAAGCCGAGGGTAATCCGAGCTGCCAATGCAATTTGGATATAAATTGGAGAAGTTTT
. : . : . : . : . : . :
JMSF016E08- CGGTGAATTTTCTGATACCG
JMSF042F24- CGGTGAATTTTCTGATACCGGAAAAGCTGAGCTACTTTGAGCGTACAACTCCCATTCACC
JMSF025L08- CGGTGAATTTTCTGATACCGGAAAAGCTGAGCTACTTTGAGCGTACAACTCCCATTCACC
rJMSF016E08+ CGGTGAATTTTCTGATACCGGAAAAGCTGAGCTACTTTGAGCGTACAACTCCCATTCACC
rJMSF042F24+ CGGTGAATTTTCTGATACCGGAAAAGCTGAGCTACTTTGAGCGTACAACTCCCATTCACC
rJMSF025L08+ CGGTGAATTTTCTGATACCGGAAAAGCTGAGCTACTTTGAGCGTACAACTCCCATTCACC
____________________________________________________________
consensus CGGTGAATTTTCTGATACCGGAAAAGCTGAGCTACTTTGAGCGTACAACTCCCATTCACC
. : . : . : . : . : . :
JMSF042F24- TTCATCATCATCATCAATAATGTCTTGGGCTAGTGCGGAGGACATTTATCTCTCTACCTC
JMSF025L08- TTCATCATCATCATCAATAATGTCTTGGGCTAGTGCGGAGGACATTTATCTCTCTACCTC
rJMSF016E08+ TTCATCATCATCATCAATAATGTCTTGGGCTAGTGCGGAGGACATTTATCTCTCTACCTC
rJMSF042F24+ TTCATCATCATCATCAATAATGTCTTGGGCTAGTGCGGAGGACATTTATCTCTCTACCTC
rJMSF025L08+ TTCATCATCATCATCAATAATGTCTTGGGCTAGTGCGGAGGACATTTATCTCTCTACCTC
____________________________________________________________
consensus TTCATCATCATCATCAATAATGTCTTGGGCTAGTGCGGAGGACATTTATCTCTCTACCTC
. : . : . : . : . : . :
JMSF042F24- TCTTGCCAATTATCTTGACAAGAAAATTCTTGTGTTGTTACGAGATGGTCGAAAGCTTTT
JMSF025L08- TCTTGCCAATTATCTTGACAAGAAAATTCTTGTGTTGTTACGAGATGGTCGAAAGCTTTT
rJMSF016E08+ TCTTGCCAATTATCTTGACAAGAAAATTCTTGTGTTGTTACGAGATGGTCGAAAGCTTTT
rJMSF042F24+ TCTTGCCAATTATCTTGACAAGAAAATTCTTGTGTTGTTACGAGATGGTCGAAAGCTTTT
rJMSF025L08+ TCTTGCCAATTATCTTGACAAGAAAATTCTTGTGTTGTTACGAGATGGTCGAAAGCTTTT
____________________________________________________________
consensus TCTTGCCAATTATCTTGACAAGAAAATTCTTGTGTTGTTACGAGATGGTCGAAAGCTTTT
. : . : . : . : . : . :
JMSF042F24- GGGGATACTTCGCTCTTTTGACCAATTTGCCAATGCTGTTCTTGAAGGAGCTTGTGAACG
JMSF025L08- GGGGATACTTCGCTCTTTTGACCAATTTGCCAATGCTGTTCTTGAAGGAGCTTGTGAACG
rJMSF016E08+ GGGGATACTTCGCTCTTTTGACCAATTTGCCAATGCTGTTCTTGAAGGAGCTTGTGAACG
rJMSF042F24+ GGGGATACTTCGCTCTTTTGACCAATTTGCCAATGCTGTTCTTGAAGGAGCTTGTGAACG
rJMSF025L08+ GGGGATACTTCGCTCTTTTGACCAATTTGCCAATGCTGTTCTTGAAGGAGCTTGTGAACG
____________________________________________________________
consensus GGGGATACTTCGCTCTTTTGACCAATTTGCCAATGCTGTTCTTGAAGGAGCTTGTGAACG
. : . : . : . : . : . :
JMSF042F24- TCTTATTGTTGGTGATATCTATTGTGACATGCCGTTAGGATTATATGTAATCCGTGGAGA
JMSF025L08- TCTTATTGTTGGTGATATCTATTGTGACATGCCGTTAGGATTATATGTAATCCGTGGAGA
rJMSF016E08+ TCTTATTGTTGGTGATATCTATTGTGACATGCCGTTAGGATTATATGTAATCCGTGGAGA
rJMSF042F24+ TCTTATTGTTGGTGATATCTATTGTGACATGCCGTTAGGATTATATGTAATCCGTGGAGA
rJMSF025L08+ TCTTATTGTTGGTGATATCTATTGTGACATGCCGTTAGGATTATATGTAATCCGTGGAGA
____________________________________________________________
consensus TCTTATTGTTGGTGATATCTATTGTGACATGCCGTTAGGATTATATGTAATCCGTGGAGA
. : . : . : . : . : . :
JMSF042F24- AAATGTCGTCTTGATTGGTGAGCTGGATTTGGATAAGGACGAACTTCCGCCACATATGAC
JMSF025L08- AAATGTCGTCTTGATTGGTGAGCTGGATTTGGATAAGGACGAACTTCCGCCACATATGAC
rJMSF016E08+ AAATGTCGTCTTGATTGGTGAGCTGGATTTGGATAAGGACGAACTTCCGCCACATATGAC
rJMSF042F24+ AAATGTCGTCTTGATTGGTGAGCTGGATTTGGATAAGGACGAACTTCCGCCACATATGAC
rJMSF025L08+ AAATGTCGTCTTGATTGGTGAGCTGGATTTGGATAAGGACGAACTTCCGCCACATATGAC
____________________________________________________________
consensus AAATGTCGTCTTGATTGGTGAGCTGGATTTGGATAAGGACGAACTTCCGCCACATATGAC
. : . : . : . : . : . :
JMSF042F24- CCGCGTTTCAGTACCAGAGA
JMSF025L08- CCGCGTTTCAGTACCAGAGAT
rJMSF016E08+ CCGCGTTTCAGTACCAGAGATACGAAGGGCGCAAAAAGCAGAAAGGGAGGCATCGGATCT
rJMSF042F24+ CCGCGTTTCAGTACCAGAGATACGAAGGGCGCAAAAAGCAGAAAGGGAGGCATCGGATCT
rJMSF025L08+ CCGCGTTTCAGTACCAGAGATACGAAGGGCGCAAAAAGCAGAAAGGGAGGCATCGGATCT
____________________________________________________________
consensus CCGCGTTTCAGTACCAGAGATACGAAGGGCGCAAAAAGCAGAAAGGGAGGCATCGGATCT
. : . : . : . : . : . :
rJMSF016E08+ CAAAGGCACAATGCGAAAGAGGATGGAATTCCTCGATATGGACTGA
rJMSF042F24+ CAAAGGCACAATGCGAAAGAGGATGGAATTCCTCGATATGGACTGA
rJMSF025L08+ CAAAGGCACAATGCGAAAGAGGATGGAATTCCTCGATATGGACTGAGATATATTTTGCAG
____________________________________________________________
consensus CAAAGGCACAATGCGAAAGAGGATGGAATTCCTCGATATGGACTGAGATATATTTTGCAG
. : . : . : . : . : . :
rJMSF025L08+ CGATGTCAGGTTCCTCTGCTCTTGTACTTGCCTCCCGCAACTATTTTATCGCGGTTGCCT
____________________________________________________________
consensus CGATGTCAGGTTCCTCTGCTCTTGTACTTGCCTCCCGCAACTATTTTATCGCGGTTGCCT
. : . : . : . : . : . :
rJMSF025L08+ GCCGGGTGGGCACAAAAATGTAACTAGGACCCGAAGATGGTCAAACATTGCCCCCCGGAG
____________________________________________________________
consensus GCCGGGTGGGCACAAAAATGTAACTAGGACCCGAAGATGGTCAAACATTGCCCCCCGGAG
. : . : . : . : . : . :
rJMSF025L08+ TTCCCTTTATTCATCGTTTTTATACATCATTGTAAAATTCACAATACATACATTCTGTTC
____________________________________________________________
consensus TTCCCTTTATTCATCGTTTTTATACATCATTGTAAAATTCACAATACATACATTCTGTTC