Contig 013974:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF025C08Sequence674013377 (3)ref|XP_009768383.1|221PREDICTED: uncharacterized protein LOC104219395 [Nicotiana sylvestris]805013974 (2)ref|XP_002320311.2|5e-80DNAJ heat shock N-terminal domain-containing family protein [Populus trichocarp
JMSF036K03Sequence681013377 (3)ref|XP_009768383.1|228PREDICTED: uncharacterized protein LOC104219395 [Nicotiana sylvestris]716013974 (2)ref|XP_002320311.2|2e-65DNAJ heat shock N-terminal domain-containing family protein [Populus trichocarp

Alignment

This contig is upended


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rJMSF025C08+                                             GACCGGATATTGCCCGGACCGCTTG
                      ____________________________________________________________
consensus                                                GACCGGATATTGCCCGGACCGCTTG
 
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rJMSF025C08+          GAAACGTCAGAATGTGCCGTACCGGGAAATCCCCGGAAAACTCTGTTCTTTGGCCACGAA
                      ____________________________________________________________
consensus             GAAACGTCAGAATGTGCCGTACCGGGAAATCCCCGGAAAACTCTGTTCTTTGGCCACGAA
 
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rJMSF036K03+           ATTCAAGAACTAAAGCATAGGGTTGCTTCTGGCGAAACTGGAAACGTGGATTATTATGC
rJMSF025C08+          AATTCAAGAACTAAAGCATAGGGTTGCTTCTGGCGAAACTGGAAACGTGGATTATTATGC
                      ____________________________________________________________
consensus             AATTCAAGAACTAAAGCATAGGGTTGCTTCTGGCGAAACTGGAAACGTGGATTATTATGC
 
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rJMSF036K03+          TTTAATGGGATTAAGGAGGGGTTGTTCAAAATCCGAATTGGAAAGATCCAATTTACTCCT
rJMSF025C08+          TTTAATGGGATTAAGGAGGGGTTGTTCAAAATCCGAATTGGAAAGATCCAATTTACTCCT
                      ____________________________________________________________
consensus             TTTAATGGGATTAAGGAGGGGTTGTTCAAAATCCGAATTGGAAAGATCCAATTTACTCCT
 
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rJMSF036K03+          TAATATCAGACACAAACCTGATAAATCCATGAGCTTCGTGGAAAGATGCGAGTTTGAAGA
rJMSF025C08+          TAATATCAGACACAAACCTGATAAATCCATGAGCTTCGTGGAAAGATGCGAGTTTGAAGA
                      ____________________________________________________________
consensus             TAATATCAGACACAAACCTGATAAATCCATGAGCTTCGTGGAAAGATGCGAGTTTGAAGA
 
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rJMSF036K03+          CGATCAAGACATTGATTCTGTGAGGGACAGAGCAAAGATGACTGCTCTATTATTGTACAG
rJMSF025C08+          CGATCAAGACATTGATTCTGTGAGGGACAGAGCAAAGATGACTGCTCTATTATTGTACAG
                      ____________________________________________________________
consensus             CGATCAAGACATTGATTCTGTGAGGGACAGAGCAAAGATGACTGCTCTATTATTGTACAG
 
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rJMSF036K03+          ATTGATTCAAAGAGCTTATACTAGCTTAACAAAGACCATCATTGAAGAAGATGTAGCCGC
rJMSF025C08+          ATTGATTCAAAGAGCTTATACTAGCTTAACAAAGACCATCATTGAAGAAGATGTAGCCGC
                      ____________________________________________________________
consensus             ATTGATTCAAAGAGCTTATACTAGCTTAACAAAGACCATCATTGAAGAAGATGTAGCCGC
 
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rJMSF036K03+          TGAGAAACAAAAGAAAAAGGCCGCCGCCGCAATGCAAGTAGAACCGGAGATGTCCGGGAA
rJMSF025C08+          TGAGAAACAAAAGAAAAAGGCCGCCGCCGCAATGCAAGTAGAACCGGAGATGTCCGGGAA
                      ____________________________________________________________
consensus             TGAGAAACAAAAGAAAAAGGCCGCCGCCGCAATGCAAGTAGAACCGGAGATGTCCGGGAA
 
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rJMSF036K03+          CAGTACTATGATCGAGAACAAGGTTACAGCAGCCATCAAAGCATCACAACAATCGCCCGC
rJMSF025C08+          CAGTACTATGATCGAGAACAAGGTTACAGCAGCCATCAAAGCATCACAACAATCGCCCGC
                      ____________________________________________________________
consensus             CAGTACTATGATCGAGAACAAGGTTACAGCAGCCATCAAAGCATCACAACAATCGCCCGC
 
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rJMSF036K03+          GTTTCAAGGAGTTTTCTGTCGTGACCTGGCCGTTGTCGGGAGCTTGCTATCTCAGGCCGG
rJMSF025C08+          GTTTCAAGGAGTTTTCTGTCGTGACCTGGCCGTTGTCGGGAGCTTGCTATCTCAGGCCGG
                      ____________________________________________________________
consensus             GTTTCAAGGAGTTTTCTGTCGTGACCTGGCCGTTGTCGGGAGCTTGCTATCTCAGGCCGG
 
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rJMSF036K03+          GTTCAATCGCCCCATTCCTATGAAATACGAAGCATTGAGCTGCTGAATTCTGATCATCAA
rJMSF025C08+          GTTCAATCGCCCCATTCCTATGAAATACGAAGCATTGAGCTGCTGAATTCTGATCATCAA
                      ____________________________________________________________
consensus             GTTCAATCGCCCCATTCCTATGAAATACGAAGCATTGAGCTGCTGAATTCTGATCATCAA
 
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rJMSF036K03+          TGGCGCCCAACAACCAGATCTCAACAAAACCGGCTGGACCAAAATGATTCAATCATTATT
rJMSF025C08+          TGGCGCCCAACAACCAGATCTCAACAAAACCGGCCGGACCAAAATGATTCAATCATTATT
                      ____________________________________________________________
consensus             TGGCGCCCAACAACCAGATCTCAACAAAACCGGCTGGACCAAAATGATTCAATCATTATT
 
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rJMSF036K03+          ACAATTAATAATAATAATAATATTATTAAACAAAAAAGTGGTCTGATCTTTTTGTACAAA
rJMSF025C08+          ACAATTAATAATAATAATAATATTATTAAACAAAAAAGTGGTCTGATCTTTTTGTACAAA
                      ____________________________________________________________
consensus             ACAATTAATAATAATAATAATATTATTAAACAAAAAAGTGGTCTGATCTTTTTGTACAAA
 
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rJMSF036K03+          ATGGTAAGAAAATAATCAAATATGTAGCTAGCTTATTAGCGGCCAAGAAAATTT      
rJMSF025C08+          ATGGTAAGAAAATAATCAAATATGTAGCTAGCTTATTAGCGGCCAAGAAAATTTTGTACT
                      ____________________________________________________________
consensus             ATGGTAAGAAAATAATCAAATATGTAGCTAGCTTATTAGCGGCCAAGAAAATTTTGTACT