Contig 013969:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS047E01Sequence510013969 (2)ref|XP_009616414.1|8e-45PREDICTED: nucleolar MIF4G domain-containing protein 1 [Nicotiana tomentosiform
JMSF022M18Sequence626010174 (4)782013969 (2)ref|XP_009773020.1|9e-106PREDICTED: nucleolar MIF4G domain-containing protein 1 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS047E01+                                                     CTCTCTAAAAAATAAATT
                      ____________________________________________________________
consensus                                                       CTCTCTAAAAAATAAATT
 
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JMFS047E01+           CTTTCTAAAAATAAATTTCTCCTCTCTCCAAATCATCATCTCTCTCTTCTTTGTCATCCA
rJMSF022M18-                 AAAATAAATTTCTCCTCTCTCC-AATCATCATCTCTCTCTTCTTTGTCATCCA
                      ____________________________________________________________
consensus             CTTTCTAAAAATAAATTTCTCCTCTCTCCAAATCATCATCTCTCTCTTCTTTGTCATCCA
 
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JMFS047E01+           AAAAAACTAGTGTGGATGCTCTAAAGCAAGCAGTATAGTGTACCAAAAATGTACCTCAAC
rJMSF022M18-          AAAAAACTAGTGTGGATGCTCTAAAGCAAGCAGTATAGTGTACCAAAAATGTACCTCAAC
                      ____________________________________________________________
consensus             AAAAAACTAGTGTGGATGCTCTAAAGCAAGCAGTATAGTGTACCAAAAATGTACCTCAAC
 
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JMFS047E01+           TAAACTTAACAAAATTTTGCTATTACATATATAAATAAATATAATCTCATCAGCAGCGCT
rJMSF022M18-          TAAACTTAACAAAATTTTGCTATTACATATATAAATAAATATAATCTCATCAGCAGCGCT
                      ____________________________________________________________
consensus             TAAACTTAACAAAATTTTGCTATTACATATATAAATAAATATAATCTCATCAGCAGCGCT
 
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JMFS047E01+           CACATTAGTACTCCTTCAACATTGTTAATGGCCTTCTTGGCAATCTTGAATTTACCTGCT
rJMSF022M18-          CACATTAGTACTCCTTCAACATTGTTAATGGCCTTCTTGGCAATCTTGAATTTACCTGCT
                      ____________________________________________________________
consensus             CACATTAGTACTCCTTCAACATTGTTAATGGCCTTCTTGGCAATCTTGAATTTACCTGCT
 
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JMFS047E01+           AGAGACTTGTTACCATTTGCAACATATTCTCGTATAAAGATGACAATCCCGTTACAAAGG
rJMSF022M18-          AGAGACTTGTTACCATTTGCAACATATTCTCGTATAAAGATGACAATCCCGTTACAAAGG
                      ____________________________________________________________
consensus             AGAGACTTGTTACCATTTGCAACATATTCTCGTATAAAGATGACAATCCCGTTACAAAGG
 
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JMFS047E01+           GACTCATGCTCTGGCAAAGCAATTCGAGTAAAAATGTTCCATACTAGTTTATCTGGGAAC
rJMSF022M18-          GACTCATGCTCTGGCAAAGCAATTCGAGTAAAAATGTTCCATACTAGTTTATCTGGGAAC
                      ____________________________________________________________
consensus             GACTCATGCTCTGGCAAAGCAATTCGAGTAAAAATGTTCCATACTAGTTTATCTGGGAAC
 
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JMFS047E01+           TCAAAGATAGCTTCGAAAAGCATACGGAAATGCATAATCCTTTTTGGAGTTAATTGTGTG
rJMSF022M18-          TCAAAGATAGCTTCGAAAAGCATACGGAAATGCATAATCCTTTTTGGAGTTAATTGTGTG
                      ____________________________________________________________
consensus             TCAAAGATAGCTTCGAAAAGCATACGGAAATGCATAATCCTTTTTGGAGTTAATTGTGTG
 
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JMFS047E01+           ACATCACCTAGATCAACCACCTTTAAGACCGAAAGGGAAAGAGTATAAGATGCGAGCATC
rJMSF022M18-          ACATCACCTAGATCAACCACCTTTAAGACCGAAAGGGAAAGAGTATAAGATGCGAGCATC
                      ____________________________________________________________
consensus             ACATCACCTAGATCAACCACCTTTAAGACCGAAAGGGAAAGAGTATAAGATGCGAGCATC
 
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JMFS047E01+           TCTGCAATGAAT                                                
rJMSF022M18-          TCTGCAATGAATTTTGAGAGGTGCATTGATCTCATCAGTTCCATCGATTCCACTTCCTTG
                      ____________________________________________________________
consensus             TCTGCAATGAATTTTGAGAGGTGCATTGATCTCATCAGTTCCATCGATTCCACTTCCTTG
 
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rJMSF022M18-          AAATGGTCCCAAAGGCAATACTGCAGAGTAAACTTATGGTTCTTATCGTGGCCGCATAAC
                      ____________________________________________________________
consensus             AAATGGTCCCAAAGGCAATACTGCAGAGTAAACTTATGGTTCTTATCGTGGCCGCATAAC
 
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rJMSF022M18-          TTAGATGCTAGTGCACAATAATACTTATTAAATACTTTCTCCTGTAAGCAGCATTCTAAC
                      ____________________________________________________________
consensus             TTAGATGCTAGTGCACAATAATACTTATTAAATACTTTCTCCTGTAAGCAGCATTCTAAC
 
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rJMSF022M18-          AGAACTCGCATTATCTCCCTATCCTGCTTCCCAGGCAAGTCCAATCTTAGAAGCTTCTCA
                      ____________________________________________________________
consensus             AGAACTCGCATTATCTCCCTATCCTGCTTCCCAGGCAAGTCCAATCTTAGAAGCTTCTCA
 
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rJMSF022M18-          AATGCATCAATGTAGTCCTCACCGCTCATATTACACAGAAAATTGCTCTCCTCGCATCTG
                      ____________________________________________________________
consensus             AATGCATCAATGTAGTCCTCACCGCTCATATTACACAGAAAATTGCTCTCCTCGCATCTG