Contig 013968:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF018N07Sequence441003643 (2)dbj|BAO57282.1|5e-69POZ/BTB containing protein [Ipomoea nil]738013968 (2)dbj|BAO57282.1|2e-115POZ/BTB containing protein [Ipomoea nil]
JMSF022K01Sequence677003643 (2)dbj|BAO57282.1|2e-116POZ/BTB containing protein [Ipomoea nil]754013968 (2)dbj|BAO57282.1|3e-119POZ/BTB containing protein [Ipomoea nil]

Alignment

This contig is upended


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rJMSF018N07+                                                   AGCTGCAGAGGGATCTACT
rJMSF022K01+                                   ATCGGCAGCGAACCCAAGCTGCAGAGGGATCTACT
                      ____________________________________________________________
consensus                                      ATCGGCAGCGAACCCAAGCTGCAGAGGGATCTACT
 
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rJMSF018N07+          TCCGCAAGTCGTCGCTTTGTTGAGCGTGCTTACAAGTATCGACCTATCAAGGTAGTGGAG
rJMSF022K01+          TCCGCAAGTCGTCGCTTTGTTGAGCGTGCTTACAAGTATCGACCTATCAAGGTAGTGGAG
                      ____________________________________________________________
consensus             TCCGCAAGTCGTCGCTTTGTTGAGCGTGCTTACAAGTATCGACCTATCAAGGTAGTGGAG
 
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rJMSF018N07+          TTTGAGGTCCCTCGGCAACAGTGTATAGTCTACTTGGACCTAAAGCGTGAAGAGTGTGCT
rJMSF022K01+          TTTGAGGTCCCTCGGCAACAGTGTATAGTCTACTTGGACCTAAAGCGTGAAGAGTGTGCT
                      ____________________________________________________________
consensus             TTTGAGGTCCCTCGGCAACAGTGTATAGTCTACTTGGACCTAAAGCGTGAAGAGTGTGCT
 
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rJMSF018N07+          AATTTGTTCCCATCTGGCCGAGTATATTCTCAAGCATTTCACCTGGGAGGACAAGGTTTT
rJMSF022K01+          AATTTGTTCCCATCTGGCCGAGTATATTCTCAAGCATTTCACCTGGGAGGACAAGGTTTT
                      ____________________________________________________________
consensus             AATTTGTTCCCATCTGGCCGAGTATATTCTCAAGCATTTCACCTGGGAGGACAAGGTTTT
 
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rJMSF018N07+          TTCCTATCGGCACATTGTAACATGGATCAACAAAGCGCTTTCCACTGCTTTGGTCTATTT
rJMSF022K01+          TTCCTATCGGCACATTGTAACATGGATCAACAAAGCGCTTTCCACTGCTTTGGTCTATTT
                      ____________________________________________________________
consensus             TTCCTATCGGCACATTGTAACATGGATCAACAAAGCGCTTTCCACTGCTTTGGTCTATTT
 
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rJMSF018N07+          CTGGGGATGCAGGAAAAGGGTTCTGTGTCATTCGCTGTCGACTATGAGTTTGCAGCTAGA
rJMSF022K01+          CTGGGGATGCAGGAAAAGGGTTCTGTGTCATTCGCTGTCGACTATGAGTTTGCAGCTAGA
                      ____________________________________________________________
consensus             CTGGGGATGCAGGAAAAGGGTTCTGTGTCATTCGCTGTCGACTATGAGTTTGCAGCTAGA
 
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rJMSF018N07+          TCAAAGCCAACAGAGGAGTATATCAGCAAATACAAGGGTAACTACACCTTTACTGGTGGA
rJMSF022K01+          TCAAAGCCAACAGAGGAGTATATCAGCAAATACAAGGGTAACTACACCTTTACTGGTGGA
                      ____________________________________________________________
consensus             TCAAAGCCAACAGAGGAGTATATCAGCAAATACAAGGGTAACTACACCTTTACTGGTGGA
 
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rJMSF018N07+          AAGGCGGTTGGCTATCGAAACTTGTTTGGTGTACAATGGACTTCTTTCATGGCAGATGAC
rJMSF022K01+          AAGGCGGTTGGCTATCGAAACTTGTTTGGTGTACAATGGACTTCTTTCATGGCAGATGAC
                      ____________________________________________________________
consensus             AAGGCGGTTGGCTATCGAAACTTGTTTGGTGTACAATGGACTTCTTTCATGGCAGATGAC
 
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rJMSF018N07+          AGTCCTTACTTCATCAATGGCATACTCCATCTTAGGGCTGAGCTTACCATCAGGCACTAA
rJMSF022K01+          AGTCCTTACTTCATCAATGGCATACTCCATCTTAGGGCTGAGCTTACCATCAGGCACTAA
                      ____________________________________________________________
consensus             AGTCCTTACTTCATCAATGGCATACTCCATCTTAGGGCTGAGCTTACCATCAGGCACTAA
 
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rJMSF018N07+          CTTCTTTCCACGATTTCCAACAAATTGTTATTTTCATTTTGGTTAGTTCCAGCCTTGTTT
rJMSF022K01+          CTTCTTTCCACGATTTCCAACAAATTGTTATTTTCATTTTGGTTAGTTCCAGCCTTGTTT
                      ____________________________________________________________
consensus             CTTCTTTCCACGATTTCCAACAAATTGTTATTTTCATTTTGGTTAGTTCCAGCCTTGTTT
 
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rJMSF018N07+          CCCCAGCTCAAAAGAAGTAAGGAAAAGCTAAGGGAAATTTAAGGTGATGGCAGTCTAACA
rJMSF022K01+          CCCCAGCTCAAAAGAAGTAAGGAAAAGCTAAGGGAAATTTAAGGTGATGGCAGTCTAACA
                      ____________________________________________________________
consensus             CCCCAGCTCAAAAGAAGTAAGGAAAAGCTAAGGGAAATTTAAGGTGATGGCAGTCTAACA
 
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rJMSF018N07+          GCTATAGTTTAGATCTTCAAAAAATGTGTATACATCCAAATGAATTGGAATGATGAAAAT
rJMSF022K01+          GCTATAGTTTAGATCTTCAAAAAATGTGTATACATCCAAAT-AATTGGAATGATGAAAAT
                      ____________________________________________________________
consensus             GCTATAGTTTAGATCTTCAAAAAATGTGTATACATCCAAATGAATTGGAATGATGAAAAT
 
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rJMSF018N07+          CAAGTTTGTGGAGGCTAAAATTTTGGTCAGCTCAGTCTGT                    
rJMSF022K01+          CAAGTTTGTGGAGGCTAAAATTTTGGTCAGCTCAGTCTGTTGGAACTCTTCCACAAAAGT
                      ____________________________________________________________
consensus             CAAGTTTGTGGAGGCTAAAATTTTGGTCAGCTCAGTCTGTTGGAACTCTTCCACAAAAGT