| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF006C05 | Sequence | 576 | 000036 (9) | dbj|BAI83441.1| | 2e-129 | granule-bound starch synthase I [Ipomoea batatas] | 765 | 013967 (6) | dbj|BAI83435.1| | 6e-101 | granule-bound starch synthase I [Ipomoea batatas] |
| JMFF008O13 | Sequence | 490 | 000036 (9) | dbj|BAI83441.1| | 1e-65 | granule-bound starch synthase I [Ipomoea batatas] | 682 | 013967 (6) | dbj|BAI83435.1| | 5e-68 | granule-bound starch synthase I [Ipomoea batatas] |
| JMFF018C11 | Sequence | 572 | 000036 (9) | dbj|BAI83441.1| | 7e-86 | granule-bound starch synthase I [Ipomoea batatas] | 768 | 013967 (6) | dbj|BAI83435.1| | 6e-101 | granule-bound starch synthase I [Ipomoea batatas] |
| JMFF022M03 | Sequence | 532 | 000036 (9) | dbj|BAI83441.1| | 2e-73 | granule-bound starch synthase I [Ipomoea batatas] | 514 | 013967 (6) | dbj|BAI83436.1| | 1e-31 | granule-bound starch synthase I [Ipomoea batatas] |
| JMFS080H06 | Sequence | 626 | 013967 (6) | dbj|BAI83435.1| | 1e-87 | granule-bound starch synthase I [Ipomoea batatas] | |||||
| JMSF022F11 | Sequence | 624 | 000036 (9) | gb|ABW83783.1| | 2e-103 | granule bound starch synthase I [Ipomoea wrightii] | 770 | 013967 (6) | dbj|BAI83435.1| | 6e-86 | granule-bound starch synthase I [Ipomoea batatas] |
This contig is upended
. : . : . : . : . : . :
rJMFF006C05+ CTGGGAAGAAGAAATTTGAGCAGGAGATTGAGCAGCTTGAAGTGATGTA
rJMFF018C11+ CTGGGAAGAAGAAATTTGAGCAGGAGATTGAGCAGCTTGAAGTGATGTA
____________________________________________________________
consensus CTGGGAAGAAGAAATTTGAGCAGGAGATTGAGCAGCTTGAAGTGATGTA
. : . : . : . : . : . :
rJMFF006C05+ TCCGGACAAAGCTAGAGGAGTGGCAAAGTTCAACGTTCCTTTGGCTCACATGATTACTGC
JMFS080H06- AGCTAGAGGAGTGGCAAAGTTCAACGTTCCTTTGGCTCACATGATTACTGC
rJMFF018C11+ TCCGGACAAAGCTAGAGGAGTGGCAAAGTTCAACGTTCCTTTGGCTCACATGATTACTGC
rJMFF008O13+ CACATGATTACTGC
rJMSF022F11+ AGCTAGAGGAGTGGCCAAGTTCAACGTTCCTTTGGCTCACATGATTACTGC
____________________________________________________________
consensus TCCGGACAAAGCTAGAGGAGTGGCAAAGTTCAACGTTCCTTTGGCTCACATGATTACTGC
. : . : . : . : . : . :
rJMFF006C05+ GGGTGCTGATTTTATGATGAT-CCCGAGCAGATTCGAACCGTGTGGTCTCATTCAGTTGC
JMFS080H06- GGGTGCTGATTTTATGATGAT-CCCGAGCAGATTCGAACCGTGTGGTCTCATTCAGTTGC
rJMFF018C11+ GGGTGCTGATTTTATGATGAT-CCCGAGCAGATTCGAACCGTGTGGTCTCATTCAGTTGC
rJMFF008O13+ GGGTGCTGATTTTATGATGATCCCCGAGCAGATTCGAACCGTGTGGTCTCATTCAGTTGC
rJMSF022F11+ GGGTGCTGATTTTATGATGAT-CCCGAGCAGATTCGAACCGTGTGGTCTCATTCAGTTGC
____________________________________________________________
consensus GGGTGCTGATTTTATGATGAT-CCCGAGCAGATTCGAACCGTGTGGTCTCATTCAGTTGC
. : . : . : . : . : . :
rJMFF006C05+ ATGCTATGCGATATGGAACACCGTGCATCTGTGCCTCAACTGGCGGACTTGTTGACACCG
JMFS080H06- ATGCTATGCGATATGGAACACCGTGCATCTGTGCCTCAACTGGCGGACTTGTTGACACCG
rJMFF018C11+ ATGCTATGCGATATGGAACACCGTGCATCTGTGCCTCAACTGGCGGACTTGTTGACACCG
rJMFF008O13+ ATGCTATGCGATATGGAACACCGTGCATCTGTGCCTCAACTGGCGGACTTGTTGACACCG
rJMSF022F11+ ATGCTATGCGATATGGAACACCGTGCATCTGTGCCTCAACTGGCGGACTTGTTGACACCG
____________________________________________________________
consensus ATGCTATGCGATATGGAACACCGTGCATCTGTGCCTCAACTGGCGGACTTGTTGACACCG
. : . : . : . : . : . :
rJMFF006C05+ TGAAAGAAGGTTATACAGGGTTCCACATGGGGGATTTCAACGTCAAGTGTGAAACTGTTG
JMFS080H06- TGAAAGAAGGTTATACAGGGTTCCACATGGGGGATTTCAACGTCAAGTGTGAAACTGTTG
rJMFF018C11+ TGAAAGAAGGTTATACAGGGTTCCACATGGGGGATTTCAACGTCAAGTGTGAAACTGTTG
rJMFF022M03+ GTCAAGTGTGANACTGTTG
rJMFF008O13+ TGAAAGAAGGTTATACAGGGTTCCACATGGGGGATTTCAACGTCAAGTGTGAAACTGTTG
rJMSF022F11+ TGAAAGAAGGTTATACAGGGTTCCACATGGGGGATTTCAACGTCAAGTGTGAAACTGTTG
____________________________________________________________
consensus TGAAAGAAGGTTATACAGGGTTCCACATGGGGGATTTCAACGTCAAGTGTGAAACTGTTG
. : . : . : . : . : . :
rJMFF006C05+ ACCCAGAGGACGTGCTGAAGGTGATAACCACTGTCGAAAGAGCACTTGCAGTGTACGGAA
JMFS080H06- ACCCAGAGGACGTGCTGAAGGTGATAACCACTGTCGAAAGAGCACTTGCAGTGTACGGAA
rJMFF018C11+ ACCCAGAGGACGTGCTGAAGGTGATAACCACTGTCGAAAGAGCACTTGCAGTGTACGGAA
rJMFF022M03+ ACCCAGAGGACGTGCTGAAGGTGATAACCACTGTCGAAAGAGCACTTGCAGTGTACGGAA
rJMFF008O13+ ACCCAGAGGACGTGCTGAAGGTGATAACCACTGTCGAAAGAGCACTTGCAGTGTACGGAA
rJMSF022F11+ ACCCAGAGGACGTGCTGAAGGTGATAACCACTGTCGAAAGAGCACTTGCAGTGTACGGAA
____________________________________________________________
consensus ACCCAGAGGACGTGCTGAAGGTGATAACCACTGTCGAAAGAGCACTTGCAGTGTACGGAA
. : . : . : . : . : . :
rJMFF006C05+ CCCTTGCATTCGCCGAAATGATCCAGAACTGCATGTCACAAGAGCTTTCCTGGAAGGGAC
JMFS080H06- CCCTTGCATTCGCCGAAATGATCCAGAACTGCATGTCACAAGAGCTTTCCTGGAAGGGAC
rJMFF018C11+ CCCTTGCATTCGCCGAAATGATCCAGAACTGCATGTCACAAGAGCTTTCCTGGAAGGGAC
rJMFF022M03+ CCCTTGCATTCGCCGAAATGATCCAGAACTGCATGTCACAAGAGCTATCCTGGAAGGGAC
rJMFF008O13+ CCCTTGCATTCGCCGAAATGATCCAGAACTGCATGTCACAAGAGCTATCCTGGAAGGGAC
rJMSF022F11+ CCCTTGCATTCGCCGAAATGATCCAGAACTGCATGTCACAAGAGCTTTCCTGGAAGGGAC
____________________________________________________________
consensus CCCTTGCATTCGCCGAAATGATCCAGAACTGCATGTCACAAGAGCTTTCCTGGAAGGGAC
. : . : . : . : . : . :
rJMFF006C05+ CTGCCAAGAATTGGGAAACAATGCTGTTGAACTTAGGAGTTGCTGGGAGCGAGGCCGGGG
JMFS080H06- CTGCCAAGAATTGGGAAACAATGCTGTTGAACTTAGGAGTTGCTGGGAGCGAGGCCGGGG
rJMFF018C11+ CTGCCAAGAATTGGGAAACAATGCTGTTGAACTTAGGAGTTGCTGGGAGCGAGGCCGGGG
rJMFF022M03+ CTGCCAAGAATTGGGAAACAATGCTTTTGAACTTAGGAGTTGCTGGGAGCGAGGCCGGGG
rJMFF008O13+ CTGCCAAGAATTGGGAAACAATGCTTTTGAACTTAGGAGTTGCTGGGAGCGAGGCCGGGG
rJMSF022F11+ CTGCCAAGAATTGGGAAACAATGCTGTTGAACTTAGGAGTTGCTGGGAGCGAGGCCGGGG
____________________________________________________________
consensus CTGCCAAGAATTGGGAAACAATGCTGTTGAACTTAGGAGTTGCTGGGAGCGAGGCCGGGG
. : . : . : . : . : . :
rJMFF006C05+ TTGAAGGAGAGGAAATTGCGCCACTTGCAAAGGAAAACGTCGCGACTCCATGAGATACCA
JMFS080H06- TTGAAGGAGAGGAAATTGCGCCACTTGCAAAGGAAAACGTCGCGACTCCATGAGATACCA
rJMFF018C11+ TTGAAGGAGAGGAAATTGCGCCACTTGCAAAGGAAAACGTCGCGACTCCATGAGATACCA
rJMFF022M03+ TTGAAGGAGAGGAAATTGCGCCACTTGCAAAGGAAAACGTCGCGACTCCATGAGATACCA
rJMFF008O13+ TTGAAGGAGAGGAAATTGCGCCACTTGCAAAGGAAAACGTCGCGACTCCATGAGATACCA
rJMSF022F11+ TTGAAGGAGAGGAAATTGCGCCACTTGCAAAGGAAAACGTCGCGACTCCATGAGATACCA
____________________________________________________________
consensus TTGAAGGAGAGGAAATTGCGCCACTTGCAAAGGAAAACGTCGCGACTCCATGAGATACCA
. : . : . : . : . : . :
rJMFF006C05+ TAAGCTCGATTAAGCTGGCATATGAAACTAATAAAGTTTTATATATGTTGAAAGAGCAGA
JMFS080H06- TAAGCTCGATTAAGCTGGCATATGAAACTAATAAAGTTTTATATATGTTGAAAGAGCAGA
rJMFF018C11+ TAAGCTCGATTAAGCTGGCATATGAAACTAATAAAGTTTTATATATGTTGAAAGAGCAGA
rJMFF022M03+ TAAGCTCGATTAAGCTGGCATATGAAACTAATAAAGTTTTATATATGTTGAAAGAGCAGA
rJMFF008O13+ TAAGCTCGATTAAGCTGGCATATGAAACTAATAAAGTTTTATATATGTTGAAAGAGCAGA
rJMSF022F11+ TAAGCTCGATTAAGCTGGCATATGAAACTAATAAAGTTTTATATATGTTGAAAGAGCAGA
____________________________________________________________
consensus TAAGCTCGATTAAGCTGGCATATGAAACTAATAAAGTTTTATATATGTTGAAAGAGCAGA
. : . : . : . : . : . :
rJMFF006C05+ GGCGTTTTGGTGGCTCTTGAGCATTATGAGGTGATGAAAGGAGCCAATGG-GGGGACTCT
JMFS080H06- GGCGTTTTGGTGGCTCTTGAGCATTATGAGGTGATGAAAGGAGCCAATGGAGGGGACTCT
rJMFF018C11+ GGCGTTTTGGTGGCTCTTGAGCATTATGAGGTGATGAAAGGAGCCAATGGAGGGGACTCT
rJMFF022M03+ GGCGTTTTGGTGGCTCTTGAGCATTATGAGGTGATGAAAGGAGCCAATGGAGGGGACTCT
rJMFF008O13+ GGCGTTTTGGTGGCTCTTGAGCATTATGAGGTGATGAAAGGAGCCAATGGAGGGGACTCT
rJMSF022F11+ GGCGTTTTGGTGGCTCTTGAGCATTATGAGGTGATGAAAGGAGCCAATGGAGGGGACTCT
____________________________________________________________
consensus GGCGTTTTGGTGGCTCTTGAGCATTATGAGGTGATGAAAGGAGCCAATGGAGGGGACTCT
. : . : . : . : . : . :
rJMFF006C05+ TTCTTTATTGTTTTTTGGTAGTAAATAGAGAGAGTTGAAACTAACTAGTTTGGTGTTTTA
JMFS080H06- NTCTTTATTGGTTTTTGGTAGTAAATAGAGAGA
rJMFF018C11+ TTCTTTATTGTTTTTTGGTAGTAAATAGAGAGAGTTGAAACTAACTAGTTTGGTGTTTTA
rJMFF022M03+ TTCTTTATTGTTTTTTGGTAGTAAATAGAGAGAGTTGAAACTAACTAGTTTGGTGTTTTA
rJMFF008O13+ TTCTTTATTGTTTTTTGGTAGTAAATAGAGAGAGTTGAAACTAACTAGTTTGGTGTTTTA
rJMSF022F11+ TTCTTTATTGTTTTTTGGTAGTAAATAGAGAGAGTTGAAACTAACTAGTTTGGTGTTTTA
____________________________________________________________
consensus TTCTTTATTGTTTTTTGGTAGTAAATAGAGAGAGTTGAAACTAACTAGTTTGGTGTTTTA
. : . : . : . : . : . :
rJMFF006C05+ AGATATTGGGAACTTTGCACTTGAGCAGGCCAAATGTATAATAATATAAATAAACAAT
rJMFF018C11+ AGATATTGGGAACTTTGCACTTGAGCAGGCCAAATGTATAATAATATAAATAAACAAT
rJMFF022M03+ AGATATTGGGAACTTTGCACTTGAGCAGGCCAAATGTATAATAATATAAATAAACA
rJMFF008O13+ AGATATTGGGAACTTTGCACTTGAGCAGGCCAAATGTATAATAATATAAATAAACAATAA
rJMSF022F11+ AGATATTGGGAACTTTGCACTTGAGCAGGCCAAATGTATAATAATATAAATAAACAATAA
____________________________________________________________
consensus AGATATTGGGAACTTTGCACTTGAGCAGGCCAAATGTATAATAATATAAATAAACAATAA
. : . : . : . : . : . :
rJMFF008O13+ TGGCCTCT
rJMSF022F11+ TGGCCTCTTGTGGTTTTGTGCTTTGATTTCCACCAACTTTTGATGAGATGATTNTGCTAT
____________________________________________________________
consensus TGGCCTCTTGTGGTTTTGTGCTTTGATTTCCACCAACTTTTGATGAGATGATTNTGCTAT