Contig 013965:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF021M07Sequence631008036 (2)ref|XP_010320657.1|2e-96PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Solanum lycopersicum]753013965 (2)ref|XP_006357257.1|4e-69PREDICTED: ultraviolet-B receptor UVR8-like isoform X2 [Solanum tuberosum]
JMSF044B12Sequence628008036 (2)ref|XP_010320657.1|1e-95PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Solanum lycopersicum]631013965 (2)ref|XP_006357257.1|1e-61PREDICTED: ultraviolet-B receptor UVR8-like isoform X2 [Solanum tuberosum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF021M07+                                     ACCNTAAAATCGACGCCATTATTGCAAACGGAG
                      ____________________________________________________________
consensus                                        ACCNTAAAATCGACGCCATTATTGCAAACGGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044B12+                                                     GGGAAGAAGCTTTGGGA
rJMSF021M07+          ACCATAGTGCAGCAATTTGTGCTGATGGACATTTGTACACGTGGGGAAGAAGCTTTGGGA
                      ____________________________________________________________
consensus             ACCATAGTGCAGCAATTTGTGCTGATGGACATTTGTACACGTGGGGAAGAAGCTTTGGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044B12+          GTGACTCGGATATGTATACGCCCAGGTGTGTCACAATGAGGTCATCGTTCAGCAGTGCTG
rJMSF021M07+          GTGACTCGGATATGTATACGCCCAGGTGTGTCACAATGAGGTCATCGTTCAGCAGTGCTG
                      ____________________________________________________________
consensus             GTGACTCGGATATGTATACGCCCAGGTGTGTCACAATGAGGTCATCGTTCAGCAGTGCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044B12+          CTCTAGGATGGAATCATGCTCTAGCATTAACAGGTGACGGGGAAGTGTTCATGATAGGTG
rJMSF021M07+          CTCTAGGATGGAATCATGCTCTAGCATTAACAGGTGACGGGGAAGTGTTCATGATAGGTG
                      ____________________________________________________________
consensus             CTCTAGGATGGAATCATGCTCTAGCATTAACAGGTGACGGGGAAGTGTTCATGATAGGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044B12+          GCTACAACTATGGTGTTTCTAGTGGTCGGAAAAACCAGTTGATTAAGCAAACATCTGAAG
rJMSF021M07+          GCTACAACTATGGTGTTTCTAGTGGTCGGAAAAACCAGTTGATTAAGCAAACATCTGAAG
                      ____________________________________________________________
consensus             GCTACAACTATGGTGTTTCTAGTGGTCGGAAAAACCAGTTGATTAAGCAAACATCTGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044B12+          ATGCAGGAAATGGAGAGATTGTGAAAAAGATTGATGCTCTTGATGGGATAAAGGTTCTTC
rJMSF021M07+          ATGCAGGAAATGGAGAGATTGTGAAAAAGATTGATGCTCTTGATGGGATAAAGGTTCTTC
                      ____________________________________________________________
consensus             ATGCAGGAAATGGAGAGATTGTGAAAAAGATTGATGCTCTTGATGGGATAAAGGTTCTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044B12+          AAATTTCAGCTGGAGCTGAACACTCGGCCTTGGTAACAGACGATGGATTGGTAATGACAT
rJMSF021M07+          AAATTTCAGCTGGAGCTGAACACTCGGCCTTGGTAACAGACGATGGATTGGTAATGACAT
                      ____________________________________________________________
consensus             AAATTTCAGCTGGAGCTGAACACTCGGCCTTGGTAACAGACGATGGATTGGTAATGACAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044B12+          GGGGATGGGGTGAGCACGGTCAACTTGGCTTTGGAGATACAAATGATCAAACCAGTCCCC
rJMSF021M07+          GGGGATGGGGTGAGCACGGTCAACTTGGCTTTGGAGATACAAATGATCAAACCAGTCCCC
                      ____________________________________________________________
consensus             GGGGATGGGGTGAGCACGGTCAACTTGGCTTTGGAGATACAAATGATCAAACCAGTCCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044B12+          GAGTTGTGAGTTTGAGTCACGAGCATGCTAAGAAGCCATCTATCGCTAAAGTTTACTGTG
rJMSF021M07+          GAGTTGTGAGTTTGAGTCACGAGCATGCTAAGAAGCCATCTATCGCTAAAGTTTACTGTG
                      ____________________________________________________________
consensus             GAGTTGTGAGTTTGAGTCACGAGCATGCTAAGAAGCCATCTATCGCTAAAGTTTACTGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044B12+          GCAGCGGCTTCACCTTTGTTGTGAAGAAGCATGCTGGGTAAATTATCAGAATTAAATTAC
rJMSF021M07+          GCAGCGGCTTCACCTTTGTTGTGAAGAAGCATGCTGGGTAAATTATCAGAATTAAATTAC
                      ____________________________________________________________
consensus             GCAGCGGCTTCACCTTTGTTGTGAAGAAGCATGCTGGGTAAATTATCAGAATTAAATTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044B12+          TGCATAGTTACTGGATTCTTAAGCTTTTAGACCACTGTGCATACAATCTTGGGTTCTTGG
rJMSF021M07+          TGCATAGTTACTGGATTCTTAAGCTTTTAGACCGCTGTGCATACAATCTTGGGTTCTTGG
                      ____________________________________________________________
consensus             TGCATAGTTACTGGATTCTTAAGCTTTTAGACCGCTGTGCATACAATCTTGGGTTCTTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044B12+          TGAGGTGCCTTTTAGTGTATTCT                                     
rJMSF021M07+          TGAGGTGCCTTTTAGTGTATTCTGTTTTTTACTTTTATACATCAGAAGCAGTATTGTTTT
                      ____________________________________________________________
consensus             TGAGGTGCCTTTTAGTGTATTCTGTTTTTTACTTTTATACATCAGAAGCAGTATTGTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF021M07+          GCCTCATAAGTTCTTGTACTAGTTGTAGTGTTTGTATACCAAAATGGTTCCATTTTGGTG
                      ____________________________________________________________
consensus             GCCTCATAAGTTCTTGTACTAGTTGTAGTGTTTGTATACCAAAATGGTTCCATTTTGGTG