| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF004O21 | Sequence | 279 | 010567 (2) | 302 | 013964 (5) | ||||||
| JMSF021J18 | Sequence | 666 | 009500 (5) | ref|XP_009624658.1| | 5e-31 | PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like isoform X | 640 | 013964 (5) | ref|XP_009624659.1| | 3e-12 | PREDICTED: mechanosensitive ion channel protein 2, chloroplastic-like isoform X |
| JMSF028O12 | Sequence | 719 | 009500 (5) | 623 | 013964 (5) | ref|XP_009624659.1| | 9e-17 | PREDICTED: mechanosensitive ion channel protein 2, chloroplastic-like isoform X | |||
| JMSF039J04 | Sequence | 664 | 020066 | ref|XP_009624658.1| | 1e-38 | PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like isoform X | 585 | 013964 (5) | ref|XP_009624659.1| | 7e-15 | PREDICTED: mechanosensitive ion channel protein 2, chloroplastic-like isoform X |
| JMSF042B08 | Sequence | 459 | 009500 (5) | ref|XP_009785624.1| | 3e-06 | PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like isoform X | 561 | 013964 (5) | ref|XP_008378585.1| | 2e-11 | PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like isoform X |
This contig is upended
. : . : . : . : . : . :
rJMSF042B08+ TNTGNCGATTNGGTTCAAA
____________________________________________________________
consensus TNTGNCGATTNGGTTCAAA
. : . : . : . : . : . :
rJMSF042B08+ GTAAAANNGAGAGGCAGCAGCAAGTTGNCAAGGTAGTTNCCGGGGAGGCATTGGTTGTCC
____________________________________________________________
consensus GTAAAANNGAGAGGCAGCAGCAAGTTGNCAAGGTAGTTNCCGGGGAGGCATTGGTTGTCC
. : . : . : . : . : . :
rJMSF028O12+ TAGATGCACCTTCGGGTGTTCCACAGGCAAAACAAGACG
rJMSF042B08+ CNGAANTGAGCGCCGAGAAGATAGATGCACNTTCGGGTGTTCCACAGGCAAAACAAGACG
____________________________________________________________
consensus CNGAANTGAGCGCCGAGAAGATAGATGCACCTTCGGGTGTTCCACAGGCAAAACAAGACG
. : . : . : . : . : . :
rJMSF028O12+ GTGGTGAAAGACCCGCCCCAGCGCCATCTCAGGCTGTGGCGAGGCCAACGCTAGAGGAGA
rJMSF042B08+ GTGGTGAAAGACCCGCCCCAGCGCCATCTCAGGCTGTGGCGAGGCCAACGCTAGAGGAGA
rJMSF039J04+ CCATTTCAGGCTGTGGCGAGGCCAACGCTAGAGGAGA
rJMSF021J18+ CCATCTCAGGCTGTGGCGAGGCCAACGCTAGAGGAGA
____________________________________________________________
consensus GTGGTGAAAGACCCGCCCCAGCGCCATCTCAGGCTGTGGCGAGGCCAACGCTAGAGGAGA
. : . : . : . : . : . :
rJMSF028O12+ ACATACTTCTCGGCGTTGCACTCGAAGGATCAAAGCGCACGCTCCCGATTGAAGAAGAAA
rJMSF042B08+ ACATACTTCTCGGCGTTGCACTCGAAGGATCAAAGCGCACGCTCCCGATTGAAGAAGAAA
rJMSF039J04+ ACATACTTCTCGGCGTTGCACTCGAAGGATCAAAGCGCACGCTCCCGATTGAAGAAGAAA
rJMSF021J18+ ACATACTTCTCGGCGTTGCACTCGAAGGATCAAAGCGCACGCTCCCGATTGAAGAAGAAA
____________________________________________________________
consensus ACATACTTCTCGGCGTTGCACTCGAAGGATCAAAGCGCACGCTCCCGATTGAAGAAGAAA
. : . : . : . : . : . :
rJMSF028O12+ TGACTCCATCCTCATCCCCATCCCCATCCCCATCCCCCGCAGCGGCTGTAGAGTCGAAGG
rJMSF042B08+ TGACTCCATCCTCATCCCCATCCCCATCCCCATCCCCCGCAGCGGCTGTAGAGTCGAAGG
rJMSF004O21+ CCATCCTCATCCCCATCCCCATCCCCATCCCCCGCAGCGGCTGTAGAGTCGAAGG
rJMSF039J04+ TGACTCCATCCTCATCCCCATCCCCATCCCCATCCCCCGCAGCGGCTGTAGAGTCGAAGG
rJMSF021J18+ TGACTCCATCCTCATCCCCATCCCCATCCCCATCCCCCGCAGCGGCTGTAGAGTCGAAGG
____________________________________________________________
consensus TGACTCCATCCTCATCCCCATCCCCATCCCCATCCCCCGCAGCGGCTGTAGAGTCGAAGG
. : . : . : . : . : . :
rJMSF028O12+ AGTTGGCCGCCTGCCGGAATGGGAACAACGCCATCACCACCGCCACCACCACTGGCGGCA
rJMSF042B08+ AGTTGGCCGCCTGCCGGAATGGGAACAACGCCATCACCACCGCCACCACCACTGGCGGCA
rJMSF004O21+ AGTTGGCCGCCTGCCGGAATGGGAACAACGCCATCACCACCGCCACCACCACTGGCGGCA
rJMSF039J04+ AGTTGGCCGCCTGCCGGAATGGGAACAACGCCATCACCACCGCCACCACCACTGGCGGCA
rJMSF021J18+ AGTTGGCCGCCTGCCGGAATGGGAACAACGCCATCACCACCGCCACCACCACTGGCGGCA
____________________________________________________________
consensus AGTTGGCCGCCTGCCGGAATGGGAACAACGCCATCACCACCGCCACCACCACTGGCGGCA
. : . : . : . : . : . :
rJMSF028O12+ AAGATAAGAAGGATGACGCCGGAGTTCAAAGCTCCTCCCCAAGCGATTTGAAAGAATGAT
rJMSF042B08+ AAGATAAGAAGGATGACGCCGGAGTTCAAAGCTCCTCCCCAAGCGATTTGAAAGAATGAT
rJMSF004O21+ AAGATAAGAAGGATGACGCCGGAGTTCAAAGCTCCTCCCCAAGCGATTTGAAAGAATGAT
rJMSF039J04+ AAGATAAGAAGGATGACGCCGGAGTTCAAAGCTCCTCCCCAAGCGATTTGAAAGAATGAT
rJMSF021J18+ AAGATAAGAAGGATGACGCCGGAGTTCAAAGCTCCTCCCCAAGCGATTTGAAAGAATGAT
____________________________________________________________
consensus AAGATAAGAAGGATGACGCCGGAGTTCAAAGCTCCTCCCCAAGCGATTTGAAAGAATGAT
. : . : . : . : . : . :
rJMSF028O12+ AAAAGGAGTGATTATTGCTATAAATTTGAGTGTGCGCAATAATGCAGTAAGGCCATGTTT
rJMSF042B08+ AAAAGGAGTGATTATTGCTATAAATTTGAGTGTGCGCAATAATGCAGTAAGGCCATGTTT
rJMSF004O21+ AAAAGGAGTGATTATTGCTATAAATTTGAGTGTGCGCAATAATGCAGTAAGGCCATGTTT
rJMSF039J04+ AAAAGGAGTGATTATTGCTATAAATTTGAGTGTGCGCAATAATGCAGTAAGGCCATGTTT
rJMSF021J18+ AAAAGGAGTGATTATTGCTATAAATTTGAGTGTGCGCAATAATGCAGTAAGGCCATGTTT
____________________________________________________________
consensus AAAAGGAGTGATTATTGCTATAAATTTGAGTGTGCGCAATAATGCAGTAAGGCCATGTTT
. : . : . : . : . : . :
rJMSF028O12+ TTAGCGCCGGCGGCATTGTGCACACTTGTAGAATCGTACATGTTACCAAAGTTTCC
rJMSF042B08+ TTAGCGCCGGCGGCATTGTGCACACTTGTAGAATCGTACATGTTACCAAAGTTTCC
rJMSF004O21+ TTAGCGCCGGCGGCATTGTGCACACTTGTAGAATCGTAC
rJMSF039J04+ TTAGCGCCGGCGGCATTGTGCACACTTGTAGAATCGTACATGTTACCAAAGTTTCC
rJMSF021J18+ TTAGCGCCGGCGGCATTGTGCACACTTGTAGAATCGTACATGTTACCAAAGTTTCCACTG
____________________________________________________________
consensus TTAGCGCCGGCGGCATTGTGCACACTTGTAGAATCGTACATGTTACCAAAGTTTCCACTG
. : . : . : . : . : . :
rJMSF021J18+ TTGTACTGTAAAACAAGAATCTGCCACCATTAAAGTATTTAAGTTACTGCCCTATTGTCA
____________________________________________________________
consensus TTGTACTGTAAAACAAGAATCTGCCACCATTAAAGTATTTAAGTTACTGCCCTATTGTCA