Contig 013964:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004O21Sequence279010567 (2)302013964 (5)
JMSF021J18Sequence666009500 (5)ref|XP_009624658.1|5e-31PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like isoform X640013964 (5)ref|XP_009624659.1|3e-12PREDICTED: mechanosensitive ion channel protein 2, chloroplastic-like isoform X
JMSF028O12Sequence719009500 (5)623013964 (5)ref|XP_009624659.1|9e-17PREDICTED: mechanosensitive ion channel protein 2, chloroplastic-like isoform X
JMSF039J04Sequence664020066ref|XP_009624658.1|1e-38PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like isoform X585013964 (5)ref|XP_009624659.1|7e-15PREDICTED: mechanosensitive ion channel protein 2, chloroplastic-like isoform X
JMSF042B08Sequence459009500 (5)ref|XP_009785624.1|3e-06PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like isoform X561013964 (5)ref|XP_008378585.1|2e-11PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like isoform X

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF042B08+ TNTGNCGATTNGGTTCAAA
                      ____________________________________________________________
consensus TNTGNCGATTNGGTTCAAA
 
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rJMSF042B08+ GTAAAANNGAGAGGCAGCAGCAAGTTGNCAAGGTAGTTNCCGGGGAGGCATTGGTTGTCC
                      ____________________________________________________________
consensus GTAAAANNGAGAGGCAGCAGCAAGTTGNCAAGGTAGTTNCCGGGGAGGCATTGGTTGTCC
 
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rJMSF028O12+ TAGATGCACCTTCGGGTGTTCCACAGGCAAAACAAGACG
rJMSF042B08+ CNGAANTGAGCGCCGAGAAGATAGATGCACNTTCGGGTGTTCCACAGGCAAAACAAGACG
                      ____________________________________________________________
consensus CNGAANTGAGCGCCGAGAAGATAGATGCACCTTCGGGTGTTCCACAGGCAAAACAAGACG
 
. : . : . : . : . : . :
rJMSF028O12+ GTGGTGAAAGACCCGCCCCAGCGCCATCTCAGGCTGTGGCGAGGCCAACGCTAGAGGAGA
rJMSF042B08+ GTGGTGAAAGACCCGCCCCAGCGCCATCTCAGGCTGTGGCGAGGCCAACGCTAGAGGAGA
rJMSF039J04+ CCATTTCAGGCTGTGGCGAGGCCAACGCTAGAGGAGA
rJMSF021J18+ CCATCTCAGGCTGTGGCGAGGCCAACGCTAGAGGAGA
                      ____________________________________________________________
consensus GTGGTGAAAGACCCGCCCCAGCGCCATCTCAGGCTGTGGCGAGGCCAACGCTAGAGGAGA
 
. : . : . : . : . : . :
rJMSF028O12+ ACATACTTCTCGGCGTTGCACTCGAAGGATCAAAGCGCACGCTCCCGATTGAAGAAGAAA
rJMSF042B08+ ACATACTTCTCGGCGTTGCACTCGAAGGATCAAAGCGCACGCTCCCGATTGAAGAAGAAA
rJMSF039J04+ ACATACTTCTCGGCGTTGCACTCGAAGGATCAAAGCGCACGCTCCCGATTGAAGAAGAAA
rJMSF021J18+ ACATACTTCTCGGCGTTGCACTCGAAGGATCAAAGCGCACGCTCCCGATTGAAGAAGAAA
                      ____________________________________________________________
consensus ACATACTTCTCGGCGTTGCACTCGAAGGATCAAAGCGCACGCTCCCGATTGAAGAAGAAA
 
. : . : . : . : . : . :
rJMSF028O12+ TGACTCCATCCTCATCCCCATCCCCATCCCCATCCCCCGCAGCGGCTGTAGAGTCGAAGG
rJMSF042B08+ TGACTCCATCCTCATCCCCATCCCCATCCCCATCCCCCGCAGCGGCTGTAGAGTCGAAGG
rJMSF004O21+ CCATCCTCATCCCCATCCCCATCCCCATCCCCCGCAGCGGCTGTAGAGTCGAAGG
rJMSF039J04+ TGACTCCATCCTCATCCCCATCCCCATCCCCATCCCCCGCAGCGGCTGTAGAGTCGAAGG
rJMSF021J18+ TGACTCCATCCTCATCCCCATCCCCATCCCCATCCCCCGCAGCGGCTGTAGAGTCGAAGG
                      ____________________________________________________________
consensus TGACTCCATCCTCATCCCCATCCCCATCCCCATCCCCCGCAGCGGCTGTAGAGTCGAAGG
 
. : . : . : . : . : . :
rJMSF028O12+ AGTTGGCCGCCTGCCGGAATGGGAACAACGCCATCACCACCGCCACCACCACTGGCGGCA
rJMSF042B08+ AGTTGGCCGCCTGCCGGAATGGGAACAACGCCATCACCACCGCCACCACCACTGGCGGCA
rJMSF004O21+ AGTTGGCCGCCTGCCGGAATGGGAACAACGCCATCACCACCGCCACCACCACTGGCGGCA
rJMSF039J04+ AGTTGGCCGCCTGCCGGAATGGGAACAACGCCATCACCACCGCCACCACCACTGGCGGCA
rJMSF021J18+ AGTTGGCCGCCTGCCGGAATGGGAACAACGCCATCACCACCGCCACCACCACTGGCGGCA
                      ____________________________________________________________
consensus AGTTGGCCGCCTGCCGGAATGGGAACAACGCCATCACCACCGCCACCACCACTGGCGGCA
 
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rJMSF028O12+ AAGATAAGAAGGATGACGCCGGAGTTCAAAGCTCCTCCCCAAGCGATTTGAAAGAATGAT
rJMSF042B08+ AAGATAAGAAGGATGACGCCGGAGTTCAAAGCTCCTCCCCAAGCGATTTGAAAGAATGAT
rJMSF004O21+ AAGATAAGAAGGATGACGCCGGAGTTCAAAGCTCCTCCCCAAGCGATTTGAAAGAATGAT
rJMSF039J04+ AAGATAAGAAGGATGACGCCGGAGTTCAAAGCTCCTCCCCAAGCGATTTGAAAGAATGAT
rJMSF021J18+ AAGATAAGAAGGATGACGCCGGAGTTCAAAGCTCCTCCCCAAGCGATTTGAAAGAATGAT
                      ____________________________________________________________
consensus AAGATAAGAAGGATGACGCCGGAGTTCAAAGCTCCTCCCCAAGCGATTTGAAAGAATGAT
 
. : . : . : . : . : . :
rJMSF028O12+ AAAAGGAGTGATTATTGCTATAAATTTGAGTGTGCGCAATAATGCAGTAAGGCCATGTTT
rJMSF042B08+ AAAAGGAGTGATTATTGCTATAAATTTGAGTGTGCGCAATAATGCAGTAAGGCCATGTTT
rJMSF004O21+ AAAAGGAGTGATTATTGCTATAAATTTGAGTGTGCGCAATAATGCAGTAAGGCCATGTTT
rJMSF039J04+ AAAAGGAGTGATTATTGCTATAAATTTGAGTGTGCGCAATAATGCAGTAAGGCCATGTTT
rJMSF021J18+ AAAAGGAGTGATTATTGCTATAAATTTGAGTGTGCGCAATAATGCAGTAAGGCCATGTTT
                      ____________________________________________________________
consensus AAAAGGAGTGATTATTGCTATAAATTTGAGTGTGCGCAATAATGCAGTAAGGCCATGTTT
 
. : . : . : . : . : . :
rJMSF028O12+ TTAGCGCCGGCGGCATTGTGCACACTTGTAGAATCGTACATGTTACCAAAGTTTCC
rJMSF042B08+ TTAGCGCCGGCGGCATTGTGCACACTTGTAGAATCGTACATGTTACCAAAGTTTCC
rJMSF004O21+ TTAGCGCCGGCGGCATTGTGCACACTTGTAGAATCGTAC
rJMSF039J04+ TTAGCGCCGGCGGCATTGTGCACACTTGTAGAATCGTACATGTTACCAAAGTTTCC
rJMSF021J18+ TTAGCGCCGGCGGCATTGTGCACACTTGTAGAATCGTACATGTTACCAAAGTTTCCACTG
                      ____________________________________________________________
consensus TTAGCGCCGGCGGCATTGTGCACACTTGTAGAATCGTACATGTTACCAAAGTTTCCACTG
 
. : . : . : . : . : . :
rJMSF021J18+ TTGTACTGTAAAACAAGAATCTGCCACCATTAAAGTATTTAAGTTACTGCCCTATTGTCA
                      ____________________________________________________________
consensus TTGTACTGTAAAACAAGAATCTGCCACCATTAAAGTATTTAAGTTACTGCCCTATTGTCA