Contig 013955:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017O23Sequence152013955 (3)
JMSF015E02Sequence624013955 (3)ref|XP_004147981.1|4e-13PREDICTED: methylsterol monooxygenase 1-2-like [Cucumis sativus]
JMSF020E22Sequence680007863 (2)ref|XP_009624558.1|3e-54PREDICTED: methylsterol monooxygenase 1-1-like [Nicotiana tomentosiformis]660013955 (3)gb|KHG16538.1|6e-12Methylsterol monooxygenase 1-1 -like protein [Gossypium arboreum]

Alignment

This contig is upended


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rJMSF020E22+                                                                    TA
                      ____________________________________________________________
consensus                                                                       TA
 
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rJMSF020E22+          TTAAAATAGGAATAAGAATCAATTGCCCTTTTTTTTTTGGGTCATATTTTCGTTCTTCAG
                      ____________________________________________________________
consensus             TTAAAATAGGAATAAGAATCAATTGCCCTTTTTTTTTTGGGTCATATTTTCGTTCTTCAG
 
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rJMSF015E02+                                             GGTATGACCTTCCTTGGACTCCCAC
rJMSF020E22+          ATTTACTTCATACATCAATTGCCAATATTGACTCAGGTATGACCTTCCTTGGACTCCCAC
                      ____________________________________________________________
consensus             ATTTACTTCATACATCAATTGCCAATATTGACTCAGGTATGACCTTCCTTGGACTCCCAC
 
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rJMSF015E02+          AAAATATATTCCTTTTTATGGTGGTCCAGATCACCATGACTACCATCANTATGTCTGGTG
rJMSF020E22+          AAAATATATTCCTTTTTATGGTGGTCCAGATCACCATGACTACCATCATTATGT-TGGTG
                      ____________________________________________________________
consensus             AAAATATATTCCTTTTTATGGTGGTCCAGATCACCATGACTACCATCATTATGTCTGGTG
 
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rJMSF015E02+          GCCTAAGTCACAGCAATTTTGCTTCAGTATTCACCTATTGTGATTACATCTATGGAACTG
rJMSF020E22+          GCCTAAGTCACAGCAATTTTGCTTCAGTATTCACCTATTGTGATTACATCTATGGAACTG
                      ____________________________________________________________
consensus             GCCTAAGTCACAGCAATTTTGCTTCAGTATTCACCTATTGTGATTACATCTATGGAACTG
 
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rJMSF015E02+          ACAAGGTGTGTATATAAAATTANAAATNATCTATATTGGATCAATTCTNGACAGCGATTT
rJMSF020E22+          ACAAGGTGTGTATATAAAATTATAAATAATCTATATTGGATCAATTCTCGACAGCGATTT
                      ____________________________________________________________
consensus             ACAAGGTGTGTATATAAAATTATAAATAATCTATATTGGATCAATTCTCGACAGCGATTT
 
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rJMSF015E02+          ATATAGGCCGTAAGACCAAACCTTTTCTTACATTTTTTTGGCCTTAATCTCACAGGGCTA
rJMSF020E22+          ATATAGGCCGTAAGACCAAACCTTTTCTTACATTTTTTTGGCCTTAATCTCACAGGGCTA
                      ____________________________________________________________
consensus             ATATAGGCCGTAAGACCAAACCTTTTCTTACATTTTTTTGGCCTTAATCTCACAGGGCTA
 
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rJMSF015E02+          CCGCTATCAAAAGAAAGTACTTCAGCAGNTACGAGAAGCCTCTAAAATCAACAGTGAACA
rJMFF017O23+                                                                 GAACA
rJMSF020E22+          CCGCTATCAAAAGAAAGTACTTCAGCAGTTACGAGAAGCCTCTAAAATCAACAGTGAACA
                      ____________________________________________________________
consensus             CCGCTATCAAAAGAAAGTACTTCAGCAGTTACGAGAAGCCTCTAAAATCAACAGTGAACA
 
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rJMSF015E02+          AAATGGATTTTCACATGCAGGCGAGGAAGATGTTAAAGTTGACTAGATCTGGAGCTTCAA
rJMFF017O23+          AAATGGATTTTCACATGCAGGCGAGGAAGATGTTAAAGTNGANTAGATGTGGAGCTTCAA
rJMSF020E22+          AAATGGATTTTCACATGCAGGCGAGGAAGATGTTAAAGTTGACTAGATCTGGAGCTTCAA
                      ____________________________________________________________
consensus             AAATGGATTTTCACATGCAGGCGAGGAAGATGTTAAAGTTGACTAGATCTGGAGCTTCAA
 
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rJMSF015E02+          TTACAACCTTCTTATTTCTTTACTAGNGAAGTTGTGGGAGCATGAAGTCGGGCGAGTGCT
rJMFF017O23+          TTACAACNTTTTTATTTCTTTACTAGTGAAGTNGTGGGAGCATGAAGTCGGNNGAGTGCT
rJMSF020E22+          TTACAACCTTCTTATTTCTTTACTAGTGAAGTTGTGGGAGCATGAAGTCGGGCGAGTGCT
                      ____________________________________________________________
consensus             TTACAACCTTCTTATTTCTTTACTAGTGAAGTTGTGGGAGCATGAAGTCGGGCGAGTGCT
 
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rJMSF015E02+          TTGTTTTTAGTGTGCTAGTCTCATAGATTTGGAAGTTGTTAAAAAGTGGTCTTGTGTGGA
rJMFF017O23+          TTGTTTTTAGTGTGTTAGTCTCATAGA                                 
rJMSF020E22+          TTGTTTTTAGTGTGCTAGTCTCATAGATTTGGAAGTTGTTAAAAAGTGGTCTTGTGTGGA
                      ____________________________________________________________
consensus             TTGTTTTTAGTGTGCTAGTCTCATAGATTTGGAAGTTGTTAAAAAGTGGTCTTGTGTGGA
 
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rJMSF015E02+          CCTAGGGGAGAATTTTATGTACTTAGTGATAAAGTAAAAGTGGTCA              
rJMSF020E22+          CCTAGGGGAGAATTTTATGTA-TTAGTGATAAAGTAAAAGTGGTCATTTGACCAGTACGT
                      ____________________________________________________________
consensus             CCTAGGGGAGAATTTTATGTACTTAGTGATAAAGTAAAAGTGGTCATTTGACCAGTACGT