Contig 013954:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF020B03Sequence677013954 (2)ref|XP_002268645.1|1e-97PREDICTED: 60S acidic ribosomal protein P0 [Vitis vinifera]776013954 (2)ref|XP_002526873.1|2e-10860S acidic ribosomal protein P0, putative [Ricinus communis] gb|EEF35504.1| 60S

Alignment

This contig is upended


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JMSF020B03-                                                GACAGTGCACAGTTTCATCTCAG
                      ____________________________________________________________
consensus                                                  GACAGTGCACAGTTTCATCTCAG
 
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JMSF020B03-           TCTAGGGCATTTTTGCTTCTCCTTTTCCCCTTTAATCTTAATCTATAGGTTAAAGTGACG
                      ____________________________________________________________
consensus             TCTAGGGCATTTTTGCTTCTCCTTTTCCCCTTTAATCTTAATCTATAGGTTAAAGTGACG
 
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JMSF020B03-           GCGCCGCCGCTGTCCGCCTTGACGGAGCTTCTAAAGCCACTGTCTTGGCCCTAAATTTTG
                      ____________________________________________________________
consensus             GCGCCGCCGCTGTCCGCCTTGACGGAGCTTCTAAAGCCACTGTCTTGGCCCTAAATTTTG
 
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JMSF020B03-           CCCCAATTTCTTAACTTTTTTCCTGTAAAGTCGTAGTTGAAGAGTTAACCTACCTTAGAT
                      ____________________________________________________________
consensus             CCCCAATTTCTTAACTTTTTTCCTGTAAAGTCGTAGTTGAAGAGTTAACCTACCTTAGAT
 
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JMSF020B03-           CCTTCAATGGCGGTGAAACAAACCAAGGCTGAGAAGAAGATTGCGTACGACCAGAAGCTC
                      ____________________________________________________________
consensus             CCTTCAATGGCGGTGAAACAAACCAAGGCTGAGAAGAAGATTGCGTACGACCAGAAGCTC
 
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JMSF020B03-           TGCCAGCTTCTGGACGAGTACACGCAAATCTTGATTGCGGTGGCCGACAATGTAGGAAGC
                      ____________________________________________________________
consensus             TGCCAGCTTCTGGACGAGTACACGCAAATCTTGATTGCGGTGGCCGACAATGTAGGAAGC
 
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JMSF020B03-           AATCAGCTTCAGAACATCAGAAAAGGGTTGAGGGGTGACTCGGTTGTGTTGATGGGTAAA
                      ____________________________________________________________
consensus             AATCAGCTTCAGAACATCAGAAAAGGGTTGAGGGGTGACTCGGTTGTGTTGATGGGTAAA
 
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JMSF020B03-           AACACTATGATTAAGAGAAGCATTCGTGTTCATGCTGAGAATTCTGGGAACACTGCCATT
                      ____________________________________________________________
consensus             AACACTATGATTAAGAGAAGCATTCGTGTTCATGCTGAGAATTCTGGGAACACTGCCATT
 
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JMSF020B03-           CTCAATATCATCCCTCTCTTGGTGGGCAATGTTGGATTGATATTCACCAAGGGTGATTTG
                      ____________________________________________________________
consensus             CTCAATATCATCCCTCTCTTGGTGGGCAATGTTGGATTGATATTCACCAAGGGTGATTTG
 
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JMSF020B03-           AAGGAAGTTAGTGAAGAGGTTGCAAAATACAAGGTTGGGGCCCCTGCTCGTGTTGGTCTT
rJMSF020B03+                              TGCAAAATACAAGGTTGGGGCCCCTGCTCGTGTTGGTCTT
                      ____________________________________________________________
consensus             AAGGAAGTTAGTGAAGAGGTTGCAAAATACAAGGTTGGGGCCCCTGCTCGTGTTGGTCTT
 
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JMSF020B03-           ATAGCTCCAATTGATGTTGTTGTCCCACCTGGAAACACGGGTCTCGACCCATCTCAGACC
rJMSF020B03+          ATAGCTCCAATTGATGTTGTTGTCCCACCTGGAAACACGGGTCTCGACCCATCTCAGACC
                      ____________________________________________________________
consensus             ATAGCTCCAATTGATGTTGTTGTCCCACCTGGAAACACGGGTCTCGACCCATCTCAGACC
 
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JMSF020B03-           TCTTTCTTCCAGGTGCTCAACATTCCTACAAAGATTAACAAGGGAACTGTTGA       
rJMSF020B03+          TCTTTCTTCCAGGTGCTCAACATTCCTACAAAGATTAACAAGGGAACTGTTGAGATCATA
                      ____________________________________________________________
consensus             TCTTTCTTCCAGGTGCTCAACATTCCTACAAAGATTAACAAGGGAACTGTTGAGATCATA
 
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rJMSF020B03+          ACCCCGGTTGAGCTTATCAAGAAGGGGGATAAGGTGGGTTCTAGTGAAGCTGCTCTCCTA
                      ____________________________________________________________
consensus             ACCCCGGTTGAGCTTATCAAGAAGGGGGATAAGGTGGGTTCTAGTGAAGCTGCTCTCCTA
 
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rJMSF020B03+          GCAAAGCTGGGCATTAGGCCGTTTTCCTATGGTCTTGTGGTCCTATCGGTTTACGATAAT
                      ____________________________________________________________
consensus             GCAAAGCTGGGCATTAGGCCGTTTTCCTATGGTCTTGTGGTCCTATCGGTTTACGATAAT
 
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rJMSF020B03+          GGAACCGTCTTCAGTCCCGAGGTTCTTGATCTGACCGAAGATGACCTTATTGGGAAGTTT
                      ____________________________________________________________
consensus             GGAACCGTCTTCAGTCCCGAGGTTCTTGATCTGACCGAAGATGACCTTATTGGGAAGTTT
 
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rJMSF020B03+          GCCATGGGTGTATCCATGGTTACTTCACTGTCGCTTGCTATATCATACCCCACTCTTGCA
                      ____________________________________________________________
consensus             GCCATGGGTGTATCCATGGTTACTTCACTGTCGCTTGCTATATCATACCCCACTCTTGCA
 
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rJMSF020B03+          GCCGCCCCACATATGCTCATAAACGGCTACAAGAATGCCCTGGCTATTGCTGTTGAAACC
                      ____________________________________________________________
consensus             GCCGCCCCACATATGCTCATAAACGGCTACAAGAATGCCCTGGCTATTGCTGTTGAAACC
 
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rJMSF020B03+          GAGTATTCGTTTCCGCTGGCTGATAAAGTGAAAGAGTATCTCGAGGACCCGAGCAAGTTT
                      ____________________________________________________________
consensus             GAGTATTCGTTTCCGCTGGCTGATAAAGTGAAAGAGTATCTCGAGGACCCGAGCAAGTTT
 
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rJMSF020B03+          GCCGTTGCAGCAGTTCCAGCTGCTGTTGCTGCTGAAGGTGGAAGCGCTGCTCCTGCTGCT
                      ____________________________________________________________
consensus             GCCGTTGCAGCAGTTCCAGCTGCTGTTGCTGCTGAAGGTGGAAGCGCTGCTCCTGCTGCT
 
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rJMSF020B03+          GCTGTAGAGGAGAAAAAAGAGGAGCCGGCAGAAGAGTCCGACGACGACTTGGGCTTCAGC
                      ____________________________________________________________
consensus             GCTGTAGAGGAGAAAAAAGAGGAGCCGGCAGAAGAGTCCGACGACGACTTGGGCTTCAGC
 
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rJMSF020B03+          TTGTTTGATTGATTCCTATGATGTTGGCTATGTTGCTTTCATGGTTTTTGAATGTTTTCT
                      ____________________________________________________________
consensus             TTGTTTGATTGATTCCTATGATGTTGGCTATGTTGCTTTCATGGTTTTTGAATGTTTTCT
 
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rJMSF020B03+          ATGTTGATGTTTTACCAAAGACAGCCATTGTTTACTCCTTTGACCCGAGTTTTGAAATTT
                      ____________________________________________________________
consensus             ATGTTGATGTTTTACCAAAGACAGCCATTGTTTACTCCTTTGACCCGAGTTTTGAAATTT