| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008D22 | Sequence | 630 | 009291 (3) | ref|XP_004234161.1| | 2e-64 | PREDICTED: 65-kDa microtubule-associated protein 3 [Solanum lycopersicum] | 730 | 013953 (3) | emb|CDP05295.1| | 2e-40 | unnamed protein product [Coffea canephora] |
| JMSF019P22 | Sequence | 280 | 009291 (3) | ref|XP_006348061.1| | 3e-10 | PREDICTED: 65-kDa microtubule-associated protein 3-like [Solanum tuberosum] | 741 | 013953 (3) | emb|CDP05295.1| | 3e-40 | unnamed protein product [Coffea canephora] |
| JMSF027P16 | Sequence | 645 | 009291 (3) | ref|XP_006348061.1| | 3e-60 | PREDICTED: 65-kDa microtubule-associated protein 3-like [Solanum tuberosum] | 764 | 013953 (3) | emb|CDP05295.1| | 9e-51 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF027P16+ GTCCTGT
____________________________________________________________
consensus GTCCTGT
. : . : . : . : . : . :
rJMSF027P16+ GGTGGCGGGGGGGCAAGTAACAGAAGGATGTCTGTTGGAGGCCTGCAGACTCCCAAACCC
rJMFF008D22+ CCC
rJMSF019P22+ CCC
____________________________________________________________
consensus GGTGGCGGGGGGGCAAGTAACAGAAGGATGTCTGTTGGAGGCCTGCAGACTCCCAAACCC
. : . : . : . : . : . :
rJMSF027P16+ GAGATAGTCCATCCCACAAAAGCAACTCCCAATACTACCCGTCAAGCTAAGAAGACTGAG
rJMFF008D22+ GAGATAGTCCATCCCACAAAAGCAACTCCCAATACTACCCGTCAAGCTAAGAAGACTGAG
rJMSF019P22+ GAGATAGTCCATCCCACAAAAGCAACTCCCAATACTACCCGTCAAGCTAAGAAGACTGAG
____________________________________________________________
consensus GAGATAGTCCATCCCACAAAAGCAACTCCCAATACTACCCGTCAAGCTAAGAAGACTGAG
. : . : . : . : . : . :
rJMSF027P16+ CGTGTTCTTCAGTATGATCCCCCGGCTGATGATGGGTTCTCAGCTTTATCAGCAGGGAGG
rJMFF008D22+ CGTGTTCTTCAGTATGATCCCCCGGCTGATGATGGGTTCTCAGCTTTATCAGCAGGGAGG
rJMSF019P22+ CGTGTTCTTCAGTATGATCCCCCGGCTGATGATGGGTTCTCAGCTTTATCAGCAGGGAGG
____________________________________________________________
consensus CGTGTTCTTCAGTATGATCCCCCGGCTGATGATGGGTTCTCAGCTTTATCAGCAGGGAGG
. : . : . : . : . : . :
rJMSF027P16+ AGAGGTTTGGACATAGCTGGTCTTCCTATGATGAGGAGGCCATTTTCGCCCATTTCTTCA
rJMFF008D22+ AGAGGTTTGGACATAGCTGGTCTTCCTATGATGAGGAGGCCATTTTCGCCCATTTCTTCA
rJMSF019P22+ AGAGGTTTGGACATAGCTGGTCTTCCTATGATGAGGAGGCCATTTTCGCCCATTTCTTCA
____________________________________________________________
consensus AGAGGTTTGGACATAGCTGGTCTTCCTATGATGAGGAGGCCATTTTCGCCCATTTCTTCA
. : . : . : . : . : . :
rJMSF027P16+ ACAGATTCATCAAGGTCGAACGCCACCAATGTCTTGGATGAGCTGAACAGAAAGCAACAA
rJMFF008D22+ ACAGATTCATCAAGGTCGAACGCCACCAATGTCTTGGATGAGCTGAACAGAAAGCAACAA
rJMSF019P22+ ACAGATTCATCAAGGTCGAACGCCACCAATGTCTTGGATGAGCTGAACAGAAAGCAACAA
____________________________________________________________
consensus ACAGATTCATCAAGGTCGAACGCCACCAATGTCTTGGATGAGCTGAACAGAAAGCAACAA
. : . : . : . : . : . :
rJMSF027P16+ CAAAGCGAGATGGTTCAGCTTCAGAAAACACTGTCTACACCGGTGAAGACAATCCCAATC
rJMFF008D22+ CAAAGCGAGATGGTTCAGCTTCAGAAAACACTGTCTACACCGGTGAAGACAATCCCAATC
rJMSF019P22+ CAAAGCGAGATGGTTCAGCTTCAGAAAACACTGTCTACACCGGTGAAGACAATCCCAATC
____________________________________________________________
consensus CAAAGCGAGATGGTTCAGCTTCAGAAAACACTGTCTACACCGGTGAAGACAATCCCAATC
. : . : . : . : . : . :
rJMSF027P16+ CCGAACCCCAATGTCGAAGAAGAGAATAGAACTCCAATGGCAATGCCAATTCCCATCCCT
rJMFF008D22+ CCGAACCCCAATGTCGAAGAAGAGAATAGAACTCCAATGGCAATGCCAATTCCCATCCCT
rJMSF019P22+ CCGAACCCCAATGTCGAAGAAGAGAATAGAACTCCAATGGCAATGCCAATTCCCATCCCT
____________________________________________________________
consensus CCGAACCCCAATGTCGAAGAAGAGAATAGAACTCCAATGGCAATGCCAATTCCCATCCCT
. : . : . : . : . : . :
rJMSF027P16+ TCAACGCCATCAACCATGTCCATTCCCATGCAGACAGCCATAACGCCAGCCCCTCTCAGC
rJMFF008D22+ TCAACGCCATCAACCATGTCCATTCCCATGCAGACAGCCATAACGCCAGCCCCTCTCAGC
rJMSF019P22+ TCAACGCCATCAACCATGTCCATTCCCATGCAGACAGCCATAACGCCAGCCCCTCTCAGC
____________________________________________________________
consensus TCAACGCCATCAACCATGTCCATTCCCATGCAGACAGCCATAACGCCAGCCCCTCTCAGC
. : . : . : . : . : . :
rJMSF027P16+ GTTGTTCCATACAATGCTGCTGCCAAGGCCGTGGAAGAGATGATGAACGAAGAGATCGAG
rJMFF008D22+ GTTGTTCCATACAATGCTGCTGCCAAGGCCGTGGAAGAGATGATGAACGAAGAGATCGAG
rJMSF019P22+ GTTGTTCCATACAATGCTGCTGCCAAGGCCGTGGAAGAGATGATGAACGAAGAGATCGAG
____________________________________________________________
consensus GTTGTTCCATACAATGCTGCTGCCAAGGCCGTGGAAGAGATGATGAACGAAGAGATCGAG
. : . : . : . : . : . :
rJMSF027P16+ TATTCTTTCGAAGAGAGGAGGGCTGGATTTGTTGTTCCAAGAACACACATAAAGACTTTG
rJMFF008D22+ TATTCTTTCGAAGAGAGGAGGGCTGGATTTGTTGTTCCAAGAACACACATAAAGACTTTG
rJMSF019P22+ TATTCTTTCGAAGAGAGGAGGGCTGGATTTGTTGTTCCAAGAACACACATAAAGACTTTG
____________________________________________________________
consensus TATTCTTTCGAAGAGAGGAGGGCTGGATTTGTTGTTCCAAGAACACACATAAAGACTTTG
. : . : . : . : . : . :
rJMSF027P16+ ATGCAAGTCTGATGATGATGATACAAACATTAGATGTATACTATCTGTCATTTCTGGTTT
rJMFF008D22+ ATGCAAGTCTGATGATGATGATACAAACATTAGATGTATACTATCTGTCATTTCTGGTTT
rJMSF019P22+ ATGCAAGTCTGATGATGATGATACAAACATTAGATGTATACTATCTGTCATTTCTGGTTT
____________________________________________________________
consensus ATGCAAGTCTGATGATGATGATACAAACATTAGATGTATACTATCTGTCATTTCTGGTTT
. : . : . : . : . : . :
rJMSF027P16+ CTGAATTTGGTCTAGTTGGTAGTGAATATGGTTGGTTTCTTGTGAAGCCAATTCTATTGG
rJMFF008D22+ CTGAATTTGGTCTAGTTGGTAGTGAATATGGTTGGTTTCTTGTGAAGCCAATTCTATTGG
rJMSF019P22+ CTGAATTTGGTCTAGTTGGTAGTGAATATGGTTGGTTTCTTGTGAAGCCAATTCTATTGG
____________________________________________________________
consensus CTGAATTTGGTCTAGTTGGTAGTGAATATGGTTGGTTTCTTGTGAAGCCAATTCTATTGG
. : . : . : . : . : . :
rJMSF027P16+ CTTCTTCTATTTGTACATTGTCTGAT
rJMFF008D22+ CTTCTTCTATTTGTACATTGTCTGATTGTCTACGACCTTAAGCGTAGACTAC
rJMSF019P22+ CTTCTTCTATTTGTACATTGTCTGATTGTCTACGACCTTAAGCGTAGACTACTGGATAAG
____________________________________________________________
consensus CTTCTTCTATTTGTACATTGTCTGATTGTCTACGACCTTAAGCGTAGACTACTGGATAAG