Contig 013952:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF019K22Sequence281013952 (2)ref|XP_008390706.1|8e-26PREDICTED: uncharacterized protein LOC103452962 isoform X2 [Malus domestica]805013952 (2)ref|XP_007016117.1|8e-66RING/U-box superfamily protein isoform 2 [Theobroma cacao] gb|EOY33736.1| RING/U

Alignment

This contig is upended


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JMSF019K22-              GGGTTTCTGCTGAGAACATTGAGGAAAGCCATGGGTAGATCATTCAAGGATTCACTC
                      ____________________________________________________________
consensus                GGGTTTCTGCTGAGAACATTGAGGAAAGCCATGGGTAGATCATTCAAGGATTCACTC
 
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JMSF019K22-           AAAGCTCTGGAAGCTGATATTCAGCTCGCCAACACTATAGCATTAGGCCATCGCAGGGAG
rJMSF019K22+                                            CTATAGCATTAGGCCATCGCA-GGAG
                      ____________________________________________________________
consensus             AAAGCTCTGGAAGCTGATATTCAGCTCGCCAACACTATAGCATTAGGCCATCGCAGGGAG
 
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JMSF019K22-           CTCGATGGAGCGTGTATTCAAATGAGACTGGCCTACAGTCCAGCTTCGCAATTCTGTCTT
rJMSF019K22+          CTCGATGGAGCGTGTATTCAAATGAGACTGGCCTACAGTCCAGCTTCGCAATTCTGTCTT
                      ____________________________________________________________
consensus             CTCGATGGAGCGTGTATTCAAATGAGACTGGCCTACAGTCCAGCTTCGCAATTCTGTCTT
 
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JMSF019K22-           TTTCTCCTTCAATGGTTTGATTGTAAGGTTGCTGGTGCGCTTGGGCTGCTTGAAGTTCTT
rJMSF019K22+          TTTCTCCTTCAATGGTTTGATTGTAAGGTTGCTGGTGCGCTTGGGCTGCTTGAAGTTCTT
                      ____________________________________________________________
consensus             TTTCTCCTTCAATGGTTTGATTGTAAGGTTGCTGGTGCGCTTGGGCTGCTTGAAGTTCTT
 
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JMSF019K22-           GTATATATGGCGTATGCTGATGGTAAAACGTCTATGTACATTAA                
rJMSF019K22+          GTATATATGGCGTATGCTGATGGTAAAACGTCTATGTACATTAAGGAAAGGAGAGCCAGC
                      ____________________________________________________________
consensus             GTATATATGGCGTATGCTGATGGTAAAACGTCTATGTACATTAAGGAAAGGAGAGCCAGC
 
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rJMSF019K22+          ATTCGAGAATTTTATGAGATAATTTTCCCGTCACTGCAAATCCAAAGAGGGATTACTGAT
                      ____________________________________________________________
consensus             ATTCGAGAATTTTATGAGATAATTTTCCCGTCACTGCAAATCCAAAGAGGGATTACTGAT
 
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rJMSF019K22+          TTCGATGAAATGAAACAGAAAGAAATATGTTCGCTCCGGTATTCGACCAAAGGGAAGCTT
                      ____________________________________________________________
consensus             TTCGATGAAATGAAACAGAAAGAAATATGTTCGCTCCGGTATTCGACCAAAGGGAAGCTT
 
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rJMSF019K22+          TCTGAAATTGAATTGGAAAGGGAAGCGGAATGTGGAATCTGCTTGGAACCTAATAGCAAA
                      ____________________________________________________________
consensus             TCTGAAATTGAATTGGAAAGGGAAGCGGAATGTGGAATCTGCTTGGAACCTAATAGCAAA
 
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rJMSF019K22+          GTTGTTTTGCCAGACTGCAGGCATTCGCTGCTTAAGATGCTTCCAGGAATGGCGCAGCCG
                      ____________________________________________________________
consensus             GTTGTTTTGCCAGACTGCAGGCATTCGCTGCTTAAGATGCTTCCAGGAATGGCGCAGCCG
 
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rJMSF019K22+          GTCTCAGTCATGCCCCTTTTGTCGAAGCAATCTCAGACGAGTAAACTCGGATGACCTTTG
                      ____________________________________________________________
consensus             GTCTCAGTCATGCCCCTTTTGTCGAAGCAATCTCAGACGAGTAAACTCGGATGACCTTTG
 
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rJMSF019K22+          GGTATGCGTGGAGAAGAGTGAAACTGTGGAGCTACCTCTAATTTTAAGGGAGGACTGGAA
                      ____________________________________________________________
consensus             GGTATGCGTGGAGAAGAGTGAAACTGTGGAGCTACCTCTAATTTTAAGGGAGGACTGGAA
 
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rJMSF019K22+          GAGGCTGTATAGGTACATCGAAAATCTACCAATTATCCTCCCAGACCCGCGGTTCACTCC
                      ____________________________________________________________
consensus             GAGGCTGTATAGGTACATCGAAAATCTACCAATTATCCTCCCAGACCCGCGGTTCACTCC
 
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rJMSF019K22+          CTATGGTTCTCACCTTCGGTGAGGCAGCGAGAGTGGATTGAATTCTGTACATAATTTTCT
                      ____________________________________________________________
consensus             CTATGGTTCTCACCTTCGGTGAGGCAGCGAGAGTGGATTGAATTCTGTACATAATTTTCT
 
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rJMSF019K22+          CGTAAACAATATCAACAACAACAGCTTCACTATCCTGCTCTGTGAATCCCTGTTTCTATC
                      ____________________________________________________________
consensus             CGTAAACAATATCAACAACAACAGCTTCACTATCCTGCTCTGTGAATCCCTGTTTCTATC
 
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rJMSF019K22+          TTTGCAGTTTCTCAAGTCATTTAGTTAGTAGTAATAGCTAGTCAAAACATTGATTGCTGT
                      ____________________________________________________________
consensus             TTTGCAGTTTCTCAAGTCATTTAGTTAGTAGTAATAGCTAGTCAAAACATTGATTGCTGT