Contig 013949:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS082G07Sequence227013949 (3)ref|XP_006365761.1|4e-39PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic-like, partia
JMSF019A16Sequence357008003 (3)791013949 (3)emb|CDP18860.1|2e-87unnamed protein product [Coffea canephora]
JMSF039N19Sequence658008003 (3)emb|CDP18860.1|7e-11unnamed protein product [Coffea canephora]736013949 (3)emb|CAC85727.1|290putative carbamoyl phosphate synthase large subunit [Nicotiana tabacum]

Alignment

This contig is upended


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rJMSF039N19+                                          GGCTGCGACGTTCTCCTCGGTCCCCGAG
rJMSF019A16+                                                                CCCGAG
                      ____________________________________________________________
consensus                                             GGCTGCGACGTTCTCCTCGGTCCCCGAG
 
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rJMSF039N19+          ATGCGGAGCACTGGCGAGGTAATGGGTATATGCTTCGAGTCATCAATTGCTTTCGCCAAA
rJMSF019A16+          ATGCGGAGCACTGGCGAGGTAATGGGTATATGCTTCGAGTCATCAATTGCTTTCGCCAAA
                      ____________________________________________________________
consensus             ATGCGGAGCACTGGCGAGGTAATGGGTATATGCTTCGAGTCATCAATTGCTTTCGCCAAA
 
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rJMSF039N19+          GCGCAAATAGCTACCGGCCAGCGAGTACCGCTCTCGGGAACTCTGTTTCTTAGCCTAAAT
rJMSF019A16+          GCGCAAATAGCTACCGGCCAGCGAGTACCGCTCTCGGGAACTCTGTTTCTTAGCCTAAAT
                      ____________________________________________________________
consensus             GCGCAAATAGCTACCGGCCAGCGAGTACCGCTCTCGGGAACTCTGTTTCTTAGCCTAAAT
 
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rJMSF039N19+          GACTTAACCAAGCGCCATCTCGCTACGATTGCCACCGCTTTCCTGTCAGTTGGATATCAA
rJMSF019A16+          GACTTAACCAAACGCCATCTCGCTACGATTGCCACCGCTTTCCTGTCAGTTGGATATCAA
                      ____________________________________________________________
consensus             GACTTAACCAAGCGCCATCTCGCTACGATTGCCACCGCTTTCCTGTCAGTTGGATATCAA
 
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JMFS082G07-                                                            CGGTCGAGCGA
rJMSF039N19+          GTAGTTGCGACTTCCGGGACTGCGTATGTACTCGAATCCGAAGGCATTCCGGTCGAGCGA
rJMSF019A16+          GTAGTTGCGACTTCCGGGACTGCGTATGTACTCGAATCCGAAGGCATTCCGGTCGAGCGA
                      ____________________________________________________________
consensus             GTAGTTGCGACTTCCGGGACTGCGTATGTACTCGAATCCGAAGGCATTCCGGTCGAGCGA
 
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JMFS082G07-           GTGTTGAAAATGCACGAAGGGAGACCCCATGCTGGTGACCTGATTGCGAATGGGAAGATT
rJMSF039N19+          GTGTTGAAAATGCACGAAGGGAGACCCCATGCTGGTGACCTGATTGCGAATGGGAAGATT
rJMSF019A16+          GTGTTGAAAATGCACGAAGGGAGACCCCATGCTGGTGACCTGATTGCGAATGGGAAGATT
                      ____________________________________________________________
consensus             GTGTTGAAAATGCACGAAGGGAGACCCCATGCTGGTGACCTGATTGCGAATGGGAAGATT
 
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JMFS082G07-           CAGTTGATGGTGATTACAAGTTCGGGAGACGCACTGGACCAGATCGATGGACGAAAGCTG
rJMSF039N19+          CAGTTGATGGTGATTACAAGTTCGGGAGACGCACTGGACCAGATCGATGGACGAAAGCTG
rJMSF019A16+          CAGTTGATGGTGATTACAAGTTCGGGAGACGCACTGGACCAGATCGATGGACGAAAGCTG
                      ____________________________________________________________
consensus             CAGTTGATGGTGATTACAAGTTCGGGAGACGCACTGGACCAGATCGATGGACGAAAGCTG
 
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JMFS082G07-           AGGAGAATGGCTCTTGCATACAAGATTCCCGTAATAACAACAGTTGCCGGTGCTCTAGCC
rJMSF039N19+          AGGAGAATGGCTCTTGCATACAAGATTCCCGTAATAACAACAGTTGCCGGTGCTCTAGCC
rJMSF019A16+          AGGAGAATGGCTCTTGCATACAAGATTCCCGTAATAACAACAGTTGCCGGTGCTCTAGCC
                      ____________________________________________________________
consensus             AGGAGAATGGCTCTTGCATACAAGATTCCCGTAATAACAACAGTTGCCGGTGCTCTAGCC
 
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JMFS082G07-           ACCGCCGAGGCAATCAAAAGCCTGAAATGTAACAAG                        
rJMSF039N19+          ACCGCCGAGGCAATCAAAAGCCTGAAATGTAACAAGCTCGAGATTTCAGCTCTTCAGGAC
rJMSF019A16+          ACCGCCGAGGCAATCAAAAGCCTGAAATGTAACAAGCTCGAGATTTCAGCTCTTCAGGAC
                      ____________________________________________________________
consensus             ACCGCCGAGGCAATCAAAAGCCTGAAATGTAACAAGCTCGAGATTTCAGCTCTTCAGGAC
 
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rJMSF039N19+          TACTTCGATGTCCCAAAGGAGACCGAGAGTAGCAAAAACCTGCAATCCGCATCCTACTCG
rJMSF019A16+          TACTTCGATGTCCCAAAGGAGACCGAGAGTAGCAAAAACCTGCAATCCGCATCCTACTCG
                      ____________________________________________________________
consensus             TACTTCGATGTCCCAAAGGAGACCGAGAGTAGCAAAAACCTGCAATCCGCATCCTACTCG
 
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rJMSF039N19+          TCTTCTAGTTGATTAGAAATTAGGTAAAAACGCAAACTCCTCTTTCTATCCTCAAACTCT
rJMSF019A16+          TCTTCTAGTTGATTAGAAATTAGGTAAAAACGCAAACTCCTCTTTCTATCCTCAAACTCT
                      ____________________________________________________________
consensus             TCTTCTAGTTGATTAGAAATTAGGTAAAAACGCAAACTCCTCTTTCTATCCTCAAACTCT
 
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rJMSF039N19+          CTTCTCAATTCCAGAATGCGTTTTACTTGATTGCTCCTCCGGTCATTATGAATTCTGACT
rJMSF019A16+          CTTCTCAATTCCAGAATGCGTTTTACTTGATTGCTCCTCCGGTCATTATGAATTCTGACT
                      ____________________________________________________________
consensus             CTTCTCAATTCCAGAATGCGTTTTACTTGATTGCTCCTCCGGTCATTATGAATTCTGACT
 
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rJMSF039N19+          TCCATCTTACATGTGAGCTCGA-TTTATCTTCCTTTTAGATTAAGATGG           
rJMSF019A16+          TCCATCTTACATGTGAGCTCGATTTTATCTTCCTTTTAGATTAAGATGGTGTTACTAAAA
                      ____________________________________________________________
consensus             TCCATCTTACATGTGAGCTCGATTTTATCTTCCTTTTAGATTAAGATGGTGTTACTAAAA
 
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rJMSF019A16+          TTCTAAATAATTAGTGCAAAATCTGTTCTCTGTGATAGACTGCCATTATATTTCTACCGT
                      ____________________________________________________________
consensus             TTCTAAATAATTAGTGCAAAATCTGTTCTCTGTGATAGACTGCCATTATATTTCTACCGT