Contig 013948:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005A22Sequence280000851 (10)335013948 (4)
JMSF018L01Sequence485000459 (13)ref|XP_009794563.1|3e-28PREDICTED: TMV resistance protein N-like [Nicotiana sylvestris]735013948 (4)ref|XP_010245461.1|4e-35PREDICTED: topless-related protein 2-like isoform X2 [Nelumbo nucifera]
JMSF032I24Sequence688000459 (13)ref|XP_006342676.1|3e-50PREDICTED: TMV resistance protein N-like [Solanum tuberosum]709013948 (4)ref|XP_010245461.1|3e-31PREDICTED: topless-related protein 2-like isoform X2 [Nelumbo nucifera]
JMSF035A03Sequence261000459 (13)719013948 (4)ref|XP_010245461.1|4e-33PREDICTED: topless-related protein 2-like isoform X2 [Nelumbo nucifera]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF018L01+ GCTACATACTCTTGC
                      ____________________________________________________________
consensus GCTACATACTCTTGC
 
. : . : . : . : . : . :
rJMSF032I24+ TTGCCAACTAATATATGCATCCTTCAAAGATGGGAATATTGGAGTGTTTGATGCACAT
rJMSF035A03+ TTGCCAACTAATATATGCATCCTTCAAAGATGGGAATATTGGAGTGTTTGATGCACAT
rJMSF018L01+ AATTGCCAACTAATATATGCATCCTTCAAAGATGGGAATATTGGAGTGTTTGATGCACAT
                      ____________________________________________________________
consensus AATTGCCAACTAATATATGCATCCTTCAAAGATGGGAATATTGGAGTGTTTGATGCACAT
 
. : . : . : . : . : . :
rJMSF032I24+ AGGTTAAGACCGAGATGTTGTATTGCTCCATCTGCTTATTTATCCCAGGCTGTATTGAAT
rJMSF035A03+ AGGTTAAGACCGAGATGTTGTATTGCTCCATCTGCTTATTTATCCCAGGCTGTATTGAAT
rJMSF018L01+ AGGTTAAGACCGAGATGTTGTATTGCTCCATCTGCTTATTTATCCCAGGCTGTATTGAAT
                      ____________________________________________________________
consensus AGGTTAAGACCGAGATGTTGTATTGCTCCATCTGCTTATTTATCCCAGGCTGTATTGAAT
 
. : . : . : . : . : . :
rJMSF032I24+ AGAAATGAGGGTGTGTATGCAGTTGTGATTGTAGCGCATCCACAAGAGCCCAACCAACTT
rJMSF035A03+ AGAAATGAGGGTGTGTATGCAGTTGTGATTGTAGCGCATCCACAAGAGCCCAACCAACTT
rJMSF018L01+ AGAAATGAGGGTGTGTATGCAGTTGTGATTGTAGCGCATCCACAAGAGCCCAACCAACTT
                      ____________________________________________________________
consensus AGAAATGAGGGTGTGTATGCAGTTGTGATTGTAGCGCATCCACAAGAGCCCAACCAACTT
 
. : . : . : . : . : . :
rJMSF032I24+ GCATTTGGATTGACAGATGGGTCTATTAAAGTTATTGAACCATTGGAATCCGGAGGGGAG
rJMSF035A03+ GCATTTGGATTGACAGATGGGTCTATTAAAGTTATTGAACCATTGGAATCCGGAGGGGAG
rJMSF018L01+ GCATTTGGATTGACAGATGGGTCTATTAAAGTTATTGAACCATTGGAATCCGGAGGGGAG
                      ____________________________________________________________
consensus GCATTTGGATTGACAGATGGGTCTATTAAAGTTATTGAACCATTGGAATCCGGAGGGGAG
 
. : . : . : . : . : . :
rJMSF032I24+ TGGGGAATATCTAGGAAAGAAGGTGAAGATGAGGAGATGGGTGATGAAGAAGGCCACCAA
rJMSF035A03+ TGGGGAATATCTAGGAAAGAAGGTGAAGATGAGGAGATGGGTGATGAAGAAGGCCACCAA
rJMSF018L01+ TGGGGAATATCTAGGAAAGAAGGTGAAGATGAGGAGATGGGTGATGAAGAAGGCCACCAA
                      ____________________________________________________________
consensus TGGGGAATATCTAGGAAAGAAGGTGAAGATGAGGAGATGGGTGATGAAGAAGGCCACCAA
 
. : . : . : . : . : . :
rJMSF032I24+ TTGGAACAAAGAAAGAAGGCCCGACTTGATAAGGGCAAGGCTCCGCTTATTTAAAGGGTG
rJMSF005A22+ TATTTAAAGGGCG
rJMSF035A03+ TTGGAACAAAGAAAGAAGGCCCGACTTGATAAGGGCAAGGCTCCGCTTATTTAAAGGGTG
rJMSF018L01+ TTGGAACAAAGAAAGAAGGCCCGACTTGATAAGGGCAAGGCTCCGCTTATTTAAAGGGTG
                      ____________________________________________________________
consensus TTGGAACAAAGAAAGAAGGCCCGACTTGATAAGGGCAAGGCTCCGCTTATTTAAAGGGTG
 
. : . : . : . : . : . :
rJMSF032I24+ TTTTTGGCAATGTTGCTCAGTTGTTTTACAGGGCATTCAGAGACATGGGTAATGCTGGTG
rJMSF005A22+ TTTTTGGCAATGTTGCTCAGTTGTTTTACAGGGCATTCAGAGACATGGGTANTGCTGGTG
rJMSF035A03+ TTTTTGGCAATGTTGCTCAGTTGTTTTACAGGGCATTCAGAGACATGGGTAATGCTGGTG
rJMSF018L01+ TTTTTGGCAATGTTGCTCAGTTGTTTTACAGGGCATTCAGAGACATGGGTAATGCTGGTG
                      ____________________________________________________________
consensus TTTTTGGCAATGTTGCTCAGTTGTTTTACAGGGCATTCAGAGACATGGGTAATGCTGGTG
 
. : . : . : . : . : . :
rJMSF032I24+ TCTTTTGAGGTGTGTTTGGAGTACATTGGCAGTATTTTTGCAATGGAATTTGCAGGGTGT
rJMSF005A22+ TCTTCTGAGGNGTGTCNGGAGNACATTGGCAGTATTTTTGCAATGNAATTTGCAGGGTGT
rJMSF035A03+ TCTTTTGAGGTGTGTTTGGAGTACATTGGCAGTATTTTTGCAATGGAATTTGCAGGGTGT
rJMSF018L01+ TCTTTTGAGGTGTGTTTGGAGTACATTGGCAGTATTTTTGCAATGGAATTTGCAGGGTGT
                      ____________________________________________________________
consensus TCTTTTGAGGTGTGTTTGGAGTACATTGGCAGTATTTTTGCAATGGAATTTGCAGGGTGT
 
. : . : . : . : . : . :
rJMSF032I24+ TTTGCTCTCAAGTGTGGTTGAAATTTGCTGTTGGTATAGGTGTGTGTTGATATCAGTGTT
rJMSF005A22+ TTTGCTCTCAAGTGTGGTTGNAATTTGCTGTTNGTATAGGTGTGTGTTGATATCAGTGTT
rJMSF035A03+ TTTGCTCTCAAGTGTGGTTGAAATTTGCTGTTGGTATAGGTGTGTGTTGATATCAGTGTT
rJMSF018L01+ TTTGCTCTCAAGTGTGGTTGAAATTTGCTGTTGGTATAGGTGTGTGTTGATATCAGTGTT
                      ____________________________________________________________
consensus TTTGCTCTCAAGTGTGGTTGAAATTTGCTGTTGGTATAGGTGTGTGTTGATATCAGTGTT
 
. : . : . : . : . : . :
rJMSF032I24+ TTTTCAAGTGTGTTGGCTGTGGACTTTGTAGCATGTGTGATATCTGGTCTTCCACCATTT
rJMSF005A22+ TTTTCAAGTNNGTTGGCTGTGGACTNNCTAGCATGTGTGATATCTGGTCTTCCACCATTT
rJMSF035A03+ TTTTCAAGTGTGTTGGCTGTGGACTTTGTAGCATGTGTGATATCTGGTCTTCCACCATTT
rJMSF018L01+ TTTTCAAGTGTGTTGGCTGTGGACTTTGTAGCATGTGTGATATCTGGTCTTCCACCATTT
                      ____________________________________________________________
consensus TTTTCAAGTGTGTTGGCTGTGGACTTTGTAGCATGTGTGATATCTGGTCTTCCACCATTT
 
. : . : . : . : . : . :
rJMSF032I24+ CTTTCGATTCAAAGGTTTTTGTTGTGCTTGGTTATGTAATTTTGTTGTTATTAATGTTGC
rJMSF005A22+ CTTTCGATTCAAAGGTTTTTGGTGTGCTTGGCTANGTAACTTTGTTGTTATTAATGTTNC
rJMSF035A03+ CTTTCGATTCAAAGGTTTTTGGTGTGCTTGGTTATGTAATTTTGTTGTTATTAATGTTGC
rJMSF018L01+ CTTTCGATTCAAAGGTTTTTGGTGTGCTTGGTTATGTAATTTTGTTGTTATTAATGTTGC
                      ____________________________________________________________
consensus CTTTCGATTCAAAGGTTTTTGGTGTGCTTGGTTATGTAATTTTGTTGTTATTAATGTTGC
 
. : . : . : . : . : . :
rJMSF032I24+ CATGTGGACCAGTAGGTTATGTAATCCTTCGACTTTAGCC
rJMSF005A22+ CATGTGGAC
rJMSF035A03+ CATGTGGACCAGTAGGTTATGTAATCCTTCGACTTTAGCC
rJMSF018L01+ CATGTGGACCAGTAGGTTATGTAATCCTTCGACTTTAGCCCATGGCATTGTTTGTGACGA
                      ____________________________________________________________
consensus CATGTGGACCAGTAGGTTATGTAATCCTTCGACTTTAGCCCATGGCATTGTTTGTGACGA