Contig 013948:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005A22Sequence280000851 (10)335013948 (4)
JMSF018L01Sequence485000459 (13)ref|XP_009794563.1|3e-28PREDICTED: TMV resistance protein N-like [Nicotiana sylvestris]735013948 (4)ref|XP_010245461.1|4e-35PREDICTED: topless-related protein 2-like isoform X2 [Nelumbo nucifera]
JMSF032I24Sequence688000459 (13)ref|XP_006342676.1|3e-50PREDICTED: TMV resistance protein N-like [Solanum tuberosum]709013948 (4)ref|XP_010245461.1|3e-31PREDICTED: topless-related protein 2-like isoform X2 [Nelumbo nucifera]
JMSF035A03Sequence261000459 (13)719013948 (4)ref|XP_010245461.1|4e-33PREDICTED: topless-related protein 2-like isoform X2 [Nelumbo nucifera]

Alignment

This contig is upended


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rJMSF018L01+                                                       GCTACATACTCTTGC
                      ____________________________________________________________
consensus                                                          GCTACATACTCTTGC
 
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rJMSF032I24+            TTGCCAACTAATATATGCATCCTTCAAAGATGGGAATATTGGAGTGTTTGATGCACAT
rJMSF035A03+            TTGCCAACTAATATATGCATCCTTCAAAGATGGGAATATTGGAGTGTTTGATGCACAT
rJMSF018L01+          AATTGCCAACTAATATATGCATCCTTCAAAGATGGGAATATTGGAGTGTTTGATGCACAT
                      ____________________________________________________________
consensus             AATTGCCAACTAATATATGCATCCTTCAAAGATGGGAATATTGGAGTGTTTGATGCACAT
 
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rJMSF032I24+          AGGTTAAGACCGAGATGTTGTATTGCTCCATCTGCTTATTTATCCCAGGCTGTATTGAAT
rJMSF035A03+          AGGTTAAGACCGAGATGTTGTATTGCTCCATCTGCTTATTTATCCCAGGCTGTATTGAAT
rJMSF018L01+          AGGTTAAGACCGAGATGTTGTATTGCTCCATCTGCTTATTTATCCCAGGCTGTATTGAAT
                      ____________________________________________________________
consensus             AGGTTAAGACCGAGATGTTGTATTGCTCCATCTGCTTATTTATCCCAGGCTGTATTGAAT
 
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rJMSF032I24+          AGAAATGAGGGTGTGTATGCAGTTGTGATTGTAGCGCATCCACAAGAGCCCAACCAACTT
rJMSF035A03+          AGAAATGAGGGTGTGTATGCAGTTGTGATTGTAGCGCATCCACAAGAGCCCAACCAACTT
rJMSF018L01+          AGAAATGAGGGTGTGTATGCAGTTGTGATTGTAGCGCATCCACAAGAGCCCAACCAACTT
                      ____________________________________________________________
consensus             AGAAATGAGGGTGTGTATGCAGTTGTGATTGTAGCGCATCCACAAGAGCCCAACCAACTT
 
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rJMSF032I24+          GCATTTGGATTGACAGATGGGTCTATTAAAGTTATTGAACCATTGGAATCCGGAGGGGAG
rJMSF035A03+          GCATTTGGATTGACAGATGGGTCTATTAAAGTTATTGAACCATTGGAATCCGGAGGGGAG
rJMSF018L01+          GCATTTGGATTGACAGATGGGTCTATTAAAGTTATTGAACCATTGGAATCCGGAGGGGAG
                      ____________________________________________________________
consensus             GCATTTGGATTGACAGATGGGTCTATTAAAGTTATTGAACCATTGGAATCCGGAGGGGAG
 
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rJMSF032I24+          TGGGGAATATCTAGGAAAGAAGGTGAAGATGAGGAGATGGGTGATGAAGAAGGCCACCAA
rJMSF035A03+          TGGGGAATATCTAGGAAAGAAGGTGAAGATGAGGAGATGGGTGATGAAGAAGGCCACCAA
rJMSF018L01+          TGGGGAATATCTAGGAAAGAAGGTGAAGATGAGGAGATGGGTGATGAAGAAGGCCACCAA
                      ____________________________________________________________
consensus             TGGGGAATATCTAGGAAAGAAGGTGAAGATGAGGAGATGGGTGATGAAGAAGGCCACCAA
 
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rJMSF032I24+          TTGGAACAAAGAAAGAAGGCCCGACTTGATAAGGGCAAGGCTCCGCTTATTTAAAGGGTG
rJMSF005A22+                                                         TATTTAAAGGGCG
rJMSF035A03+          TTGGAACAAAGAAAGAAGGCCCGACTTGATAAGGGCAAGGCTCCGCTTATTTAAAGGGTG
rJMSF018L01+          TTGGAACAAAGAAAGAAGGCCCGACTTGATAAGGGCAAGGCTCCGCTTATTTAAAGGGTG
                      ____________________________________________________________
consensus             TTGGAACAAAGAAAGAAGGCCCGACTTGATAAGGGCAAGGCTCCGCTTATTTAAAGGGTG
 
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rJMSF032I24+          TTTTTGGCAATGTTGCTCAGTTGTTTTACAGGGCATTCAGAGACATGGGTAATGCTGGTG
rJMSF005A22+          TTTTTGGCAATGTTGCTCAGTTGTTTTACAGGGCATTCAGAGACATGGGTANTGCTGGTG
rJMSF035A03+          TTTTTGGCAATGTTGCTCAGTTGTTTTACAGGGCATTCAGAGACATGGGTAATGCTGGTG
rJMSF018L01+          TTTTTGGCAATGTTGCTCAGTTGTTTTACAGGGCATTCAGAGACATGGGTAATGCTGGTG
                      ____________________________________________________________
consensus             TTTTTGGCAATGTTGCTCAGTTGTTTTACAGGGCATTCAGAGACATGGGTAATGCTGGTG
 
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rJMSF032I24+          TCTTTTGAGGTGTGTTTGGAGTACATTGGCAGTATTTTTGCAATGGAATTTGCAGGGTGT
rJMSF005A22+          TCTTCTGAGGNGTGTCNGGAGNACATTGGCAGTATTTTTGCAATGNAATTTGCAGGGTGT
rJMSF035A03+          TCTTTTGAGGTGTGTTTGGAGTACATTGGCAGTATTTTTGCAATGGAATTTGCAGGGTGT
rJMSF018L01+          TCTTTTGAGGTGTGTTTGGAGTACATTGGCAGTATTTTTGCAATGGAATTTGCAGGGTGT
                      ____________________________________________________________
consensus             TCTTTTGAGGTGTGTTTGGAGTACATTGGCAGTATTTTTGCAATGGAATTTGCAGGGTGT
 
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rJMSF032I24+          TTTGCTCTCAAGTGTGGTTGAAATTTGCTGTTGGTATAGGTGTGTGTTGATATCAGTGTT
rJMSF005A22+          TTTGCTCTCAAGTGTGGTTGNAATTTGCTGTTNGTATAGGTGTGTGTTGATATCAGTGTT
rJMSF035A03+          TTTGCTCTCAAGTGTGGTTGAAATTTGCTGTTGGTATAGGTGTGTGTTGATATCAGTGTT
rJMSF018L01+          TTTGCTCTCAAGTGTGGTTGAAATTTGCTGTTGGTATAGGTGTGTGTTGATATCAGTGTT
                      ____________________________________________________________
consensus             TTTGCTCTCAAGTGTGGTTGAAATTTGCTGTTGGTATAGGTGTGTGTTGATATCAGTGTT
 
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rJMSF032I24+          TTTTCAAGTGTGTTGGCTGTGGACTTTGTAGCATGTGTGATATCTGGTCTTCCACCATTT
rJMSF005A22+          TTTTCAAGTNNGTTGGCTGTGGACTNNCTAGCATGTGTGATATCTGGTCTTCCACCATTT
rJMSF035A03+          TTTTCAAGTGTGTTGGCTGTGGACTTTGTAGCATGTGTGATATCTGGTCTTCCACCATTT
rJMSF018L01+          TTTTCAAGTGTGTTGGCTGTGGACTTTGTAGCATGTGTGATATCTGGTCTTCCACCATTT
                      ____________________________________________________________
consensus             TTTTCAAGTGTGTTGGCTGTGGACTTTGTAGCATGTGTGATATCTGGTCTTCCACCATTT
 
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rJMSF032I24+          CTTTCGATTCAAAGGTTTTTGTTGTGCTTGGTTATGTAATTTTGTTGTTATTAATGTTGC
rJMSF005A22+          CTTTCGATTCAAAGGTTTTTGGTGTGCTTGGCTANGTAACTTTGTTGTTATTAATGTTNC
rJMSF035A03+          CTTTCGATTCAAAGGTTTTTGGTGTGCTTGGTTATGTAATTTTGTTGTTATTAATGTTGC
rJMSF018L01+          CTTTCGATTCAAAGGTTTTTGGTGTGCTTGGTTATGTAATTTTGTTGTTATTAATGTTGC
                      ____________________________________________________________
consensus             CTTTCGATTCAAAGGTTTTTGGTGTGCTTGGTTATGTAATTTTGTTGTTATTAATGTTGC
 
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rJMSF032I24+          CATGTGGACCAGTAGGTTATGTAATCCTTCGACTTTAGCC                    
rJMSF005A22+          CATGTGGAC                                                   
rJMSF035A03+          CATGTGGACCAGTAGGTTATGTAATCCTTCGACTTTAGCC                    
rJMSF018L01+          CATGTGGACCAGTAGGTTATGTAATCCTTCGACTTTAGCCCATGGCATTGTTTGTGACGA
                      ____________________________________________________________
consensus             CATGTGGACCAGTAGGTTATGTAATCCTTCGACTTTAGCCCATGGCATTGTTTGTGACGA