Contig 013947:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF015B04+                                                        AAGCCAGTGATNAG
                      ____________________________________________________________
consensus                                                           AAGCCAGTGATNAG
 
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rJMSF015B04+          GCTGAGGAGATGCTGTCTGGATTGCTTAAGCAAAAGGTTGATGGGTTTCTCATGCTGATA
rJMSF018K02+                                                          CTCATGCTGATA
                      ____________________________________________________________
consensus             GCTGAGGAGATGCTGTCTGGATTGCTTAAGCAAAAGGTTGATGGGTTTCTCATGCTGATA
 
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rJMSF015B04+          GAGAATGTAAATTGGATGGCTGATGATCCTCCTCAAGGGGGAAATGAATATGCAAATGAG
rJMSF018K02+          GAGAATGTAAATTGGATGGCTGATGATCCTCCTCAAGGGGGAAATGAATATGCAAATGAG
                      ____________________________________________________________
consensus             GAGAATGTAAATTGGATGGCTGATGATCCTCCTCAAGGGGGAAATGAATATGCAAATGAG
 
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rJMSF015B04+          GTCATTATTTTCCTGGAAACTCTTGTCTCTACTGCTCAGCAGATATTGCCGGTTCCAGTT
rJMSF018K02+          GTCATTATTTTCCTGGAAACTCTTGTCTCTACTGCTCAGCAGATATTGCCGGTTCCAGTT
                      ____________________________________________________________
consensus             GTCATTATTTTCCTGGAAACTCTTGTCTCTACTGCTCAGCAGATATTGCCGGTTCCAGTT
 
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rJMSF015B04+          CTCAAAAGAGTTATGCAAGATGTTCTTGCTCACATATCAGAAATGGTAGTTGGGGCATTG
rJMSF018K02+          CTCAAAAGAGTTATGCAAGATGTTCTTGCTCACATATCAGAAATGGTAGTTGGGGCATTG
                      ____________________________________________________________
consensus             CTCAAAAGAGTTATGCAAGATGTTCTTGCTCACATATCAGAAATGGTAGTTGGGGCATTG
 
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rJMSF015B04+          CTAGGTGAATCTGTTAAAAGGTTTAACATCAATGCCATCATGGGTCTTGATGTGGATATT
rJMSF018K02+          CTAGGTGAATCTGTTAAAAGGTTTAACATCAATGCCATCATGGGTCTTGATGTGGATATT
                      ____________________________________________________________
consensus             CTAGGTGAATCTGTTAAAAGGTTTAACATCAATGCCATCATGGGTCTTGATGTGGATATT
 
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rJMSF015B04+          CGGCTGTTGGAATCATTTGCTGAGAACCAAGCTCCTCTTCTATCTGATGCAGATGCAAAT
JMFF045M06-             GCTGTTGGAATCATTTGCTGAGAACCAAGCTCCTCTTCTATCTGATGCAGATGCAAAT
rJMSF018K02+          CGGCTGTTGGAATCATTTGCTGAGAACCAAGCTCCTCTTCTATCTGATGCAGATGCAAAT
                      ____________________________________________________________
consensus             CGGCTGTTGGAATCATTTGCTGAGAACCAAGCTCCTCTTCTATCTGATGCAGATGCAAAT
 
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rJMSF015B04+          CAGCTGAAAGCAGGTCTGGCTGAGTCAAGACAATTGGTCAATTTACTCTTAAGCAATCAC
JMFF045M06-           CAGCTGAAAGCAGGTCTGGCTGAGTCAAGACAATTGGTCAATTTACTCTTAAGCAATCAC
rJMSF018K02+          CAGCTGAAAGCAGGTCTGGCTGAGTCAAGACAATTGGTCAATTTACTCTTAAGCAATCAC
                      ____________________________________________________________
consensus             CAGCTGAAAGCAGGTCTGGCTGAGTCAAGACAATTGGTCAATTTACTCTTAAGCAATCAC
 
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rJMSF015B04+          CCTGAAAATTTCCTGAATCCAGTAATTCGAGAGAGGAGCTATAATGCCTTGGACTACCGA
JMFF045M06-           CCTGAAAATTTCCTGAATCCAGTAATTCGAGAGAGGAGCTATAATGCCTTGGACTACCGA
rJMSF018K02+          CCTGAAAATTTCCTGAATCCAGTAATTCGAGAGAGGAGCTATAATGCCTTGGACTACCGA
                      ____________________________________________________________
consensus             CCTGAAAATTTCCTGAATCCAGTAATTCGAGAGAGGAGCTATAATGCCTTGGACTACCGA
 
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rJMSF015B04+          AAAGTAGTGGCAATTTCAGAGAAGATGCGTGATCAATCAGATCGTCTCTTTGGATCATTT
JMFF045M06-           AAAGTAGTGGCAATTTCAGAGAAGATGCGTGATCAATCAGATCGTCTCTTTGGATCATTT
rJMSF018K02+          AAAGTAGTGGCAATTTCAGAGAAGATGCGTGATCAATCAGATCGTCTCTTTGGATCATTT
                      ____________________________________________________________
consensus             AAAGTAGTGGCAATTTCAGAGAAGATGCGTGATCAATCAGATCGTCTCTTTGGATCATTT
 
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rJMSF015B04+          GGAACTAGGGGAGCAAAACAAAACACAAAGAAGAAATCTCTTGATCAATTGATAAAAAGG
JMFF045M06-           GGAACTAGGGGAGCAAAACAAAACACAAAGAAGAGATCTCTTGATCAATTGATAAAAAGG
rJMSF018K02+          GGAACTAGGGGAGCAAAACAAAACACAAAGAAGAAATCTCTTGATCAATTGATAAAAAGG
                      ____________________________________________________________
consensus             GGAACTAGGGGAGCAAAACAAAACACAAAGAAGAAATCTCTTGATCAATTGATAAAAAGG
 
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rJMSF015B04+          CTCAAGGACGTGAACTAAAATTCATTAAACCTCT                          
JMFF045M06-           CTCAAGGACGTGAACTAAAATTCATTAAACCTCT                          
rJMSF018K02+          CTCAAGGACGTGAACTAAAATTCATTAAACCTCTAAGGTAGAGACAATGATGCATAGGAG
                      ____________________________________________________________
consensus             CTCAAGGACGTGAACTAAAATTCATTAAACCTCTAAGGTAGAGACAATGATGCATAGGAG
 
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rJMSF018K02+          AATTATTTTTGATGATAGTACTGACGAAGGTGGTAATGGTGATTATTCTATTGTGTACAA
                      ____________________________________________________________
consensus             AATTATTTTTGATGATAGTACTGACGAAGGTGGTAATGGTGATTATTCTATTGTGTACAA
 
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rJMSF018K02+          TGTTTCAAGACTGCTTCATAGGAGAAATACTATATGCTTGAAATTGCAGACGCAATGCTT
                      ____________________________________________________________
consensus             TGTTTCAAGACTGCTTCATAGGAGAAATACTATATGCTTGAAATTGCAGACGCAATGCTT