| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF011B16 | Sequence | 200 | 013945 (9) | 741 | 013945 (9) | ref|XP_009627900.1| | 7e-85 | PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic [Nicotiana tomentosif | |||
| JMSF018E05 | Sequence | 537 | 013945 (9) | ref|XP_004241678.1| | 1e-44 | PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic [Solanum lycopersicum | 760 | 013945 (9) | ref|XP_009627900.1| | 7e-84 | PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic [Nicotiana tomentosif |
| JMSF026L22 | Sequence | 649 | 006911 (3) | ref|XP_004235862.1| | 3e-96 | PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Solanum ly | 663 | 013945 (9) | ref|XP_009627900.1| | 5e-66 | PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic [Nicotiana tomentosif |
| JMSF047G20 | Sequence | 670 | 013945 (9) | emb|CDO98234.1| | 2e-76 | unnamed protein product [Coffea canephora] | 709 | 013945 (9) | ref|XP_009627900.1| | 3e-87 | PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic [Nicotiana tomentosif |
| JMSF052F05 | Sequence | 698 | 013945 (9) | emb|CDO98234.1| | 3e-70 | unnamed protein product [Coffea canephora] | 954 | 013945 (9) | ref|XP_009627900.1| | 5e-119 | PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic [Nicotiana tomentosif |
This contig is upended
. : . : . : . : . : . :
JMSF018E05- TG
JMSF052F05- GATGCAAACAGGATCTCTTATCATCTCTATTCTCTG
____________________________________________________________
consensus GATGCAAACAGGATCTCTTATCATCTCTATTCTCTG
. : . : . : . : . : . :
JMSF011B16- ACAGTTGGGATTTCCCTCCACTCTTTTCAACCAACCAAAGC
JMSF018E05- TGATCTCCAGTTGTCCAATACAGTTGGGATTTCCCTCCACTCTTTTCAACCAACCAAAGC
JMSF052F05- TGATCTCCAGTTGTCCAATACAGTTGGGATTTCCCTCCACTCTTTTCAACCAACCAAAGC
JMSF047G20- ACAGTTGGGATTTCCCTCCACTCTTTTCAACCAACCAAAGC
____________________________________________________________
consensus TGATCTCCAGTTGTCCAATACAGTTGGGATTTCCCTCCACTCTTTTCAACCAACCAAAGC
. : . : . : . : . : . :
JMSF011B16- AGAGCACCCATGGCTATGGCGGTTCACACAGCCGCCGCGTTTTCTCCTTCTCCATCTGTC
JMSF018E05- AGAGCACCCATGGCTATGGCGGTTCACACAGCCGCCGCGTTTTCTCCTTCTCCATCTGTC
JMSF052F05- AGAGCACCCATGGCTATGGCGGTTCACACAGCCGCCGCGTTTTCTCCTTCTCCATCTGTC
JMSF047G20- AGAGCACCCATGGCTATGGCGGTTCACACAGCCGCCGCGTTTTCTCCTTCTCCATCTGTC
____________________________________________________________
consensus AGAGCACCCATGGCTATGGCGGTTCACACAGCCGCCGCGTTTTCTCCTTCTCCATCTGTC
. : . : . : . : . : . :
JMSF011B16- TCTCAGCTTAATCTTTCCCGATCCTCTTTCTCTCTCATCCCGTTTCATTACACTCGTCCC
JMSF018E05- TCTCAGCTTAATCTTTCCCGATCCTCTTTCTCTCTCATCCCGTTTCATTACACTCGTCCC
JMSF052F05- TCTCAGCTTAATCTTTCCCGATCCTCTTTCTCTCTCATCCCGTTTCATTACACTCGTCCC
JMSF047G20- TCTCAGCTTAATCTTTCCCGATCCTCTTTCTCTCTCATCCCGTTTCATTACACTCGTCCC
____________________________________________________________
consensus TCTCAGCTTAATCTTTCCCGATCCTCTTTCTCTCTCATCCCGTTTCATTACACTCGTCCC
. : . : . : . : . : . :
JMSF011B16- CAAACTTATCCAAAGTCACTACTACCTTTAA
JMSF018E05- CAAACTTATCCAAAGTCACTACTACCTTTAAAGCTCAGACTGACGCCGCAGTGCTCCAAG
JMSF052F05- CAAACTTATCCAAAGTCACTACTACCTTTAAAGCTCAGACTGACGCCGCAGTGCTCCAAG
JMSF047G20- CAAACTTATCCAAAGTCACTACTACCTTTAAAGCTCAGACTGACGCCGCAGTGCTCCAAG
____________________________________________________________
consensus CAAACTTATCCAAAGTCACTACTACCTTTAAAGCTCAGACTGACGCCGCAGTGCTCCAAG
. : . : . : . : . : . :
JMSF018E05- AAGGAAGTGGGAGCCACCGCCGCCGCGGCCTCCGGCAACCCCAAGCTCGGCGTTGCAGTA
JMSF052F05- AAGGAAGTGGGAGCCACCGCCGCCGCGGCCTCCGGCAACCCCAAGCTCGGCGTTGCAGTA
JMSF047G20- AAGGAAGTGGGAGCCACCGCCGCCGCGGCCTCCGGCAACCCCAAGCTCGGCGTTGCAGTA
____________________________________________________________
consensus AAGGAAGTGGGAGCCACCGCCGCCGCGGCCTCCGGCAACCCCAAGCTCGGCGTTGCAGTA
. : . : . : . : . : . :
JMSF018E05- TACAAACCCAGGTCTTACGATGTCCTCGCATCTGACGCCGCGAATTCCCTCTTTTACGCT
JMSF052F05- TACAAACCCAGGTCTTACGATGTCCTCGCATCTGACGCCGCGAATTCCCTCTTTTACGCT
JMSF047G20- TACAAACCCAGGTCTTACGATGTCCTCGCATCTGACGCCGCGAATTCCCTCTTTTACGCT
____________________________________________________________
consensus TACAAACCCAGGTCTTACGATGTCCTCGCATCTGACGCCGCGAATTCCCTCTTTTACGCT
. : . : . : . : . : . :
JMSF018E05- CTCAACGACGGGAAGACTCGCGTCGAAATCGAATTTCCTCCCTTGCCTAGCAACATTTCT
JMSF052F05- CTCAACGACGGGAAGACTCGCGTCGAAATCGAATTTCCTCCCTTGCCTAGCAACATTTCT
JMSF047G20- CTCAACGACGGGAAGACTCGCGTCGAAATCGAATTTCCTCCCTTGCCTAGCAACATTTCT
____________________________________________________________
consensus CTCAACGACGGGAAGACTCGCGTCGAAATCGAATTTCCTCCCTTGCCTAGCAACATTTCT
. : . : . : . : . : . :
JMSF018E05- TCCTATAAGGGATCATCAGATGAGTTTAGTGATGCCAACATTCAACTTGCCTTGGCTGTT
JMSF052F05- TCCTATAAGGGATCATCAGATGAGTTTAGTGATGCCAACATTCAACTTGCCTTGGCTGTT
JMSF047G20- TCCTATAAGGGATCATCAGATGAGTTTAGTGATGCCAACATTCAACTTGCCTTGGCTGTT
____________________________________________________________
consensus TCCTATAAGGGATCATCAGATGAGTTTAGTGATGCCAACATTCAACTTGCCTTGGCTGTT
. : . : . : . : . : . :
JMSF018E05- GTCAAGAAGCTTCAAGAGAAGAAGGAAACTAGGGCTTGCATTGTATTTGCTGA
JMSF052F05- GTCAAGAAGCTTCAAGAGAAGAAGGAAACTAGGGCTTGCATTGTATTTGCTGACAAGCCA
JMSF047G20- GTCAAGAAGCTTCAAGAGAAGAAGGAAACTAGGGCTTGCATTGTATTTGCTGACAAGCCA
____________________________________________________________
consensus GTCAAGAAGCTTCAAGAGAAGAAGGAAACTAGGGCTTGCATTGTATTTGCTGACAAGCCA
. : . : . : . : . : . :
JMSF052F05- GAAAAGCGCAGAGCCACCGATCTTTTCAAAACAGCTTTTGACTCGATTGATGGTTTAACC
JMSF047G20- GAAAAGCGCAGAGCCACCGATCTTTTCAAAACAGCTTTTGACTCGATTGATGGTTTAACC
____________________________________________________________
consensus GAAAAGCGCAGAGCCACCGATCTTTTCAAAACAGCTTTTGACTCGATTGATGGTTTAACC
. : . : . : . : . : . :
JMSF052F05- ATTGGGACGTTGGATGATATTCCTAGTGGTCCTGTGGCTACATTTTTCAGATCTGTAAGT
JMSF047G20- ATTGGGACGTTGGATGATATTCCTAGTGGTCCTGTGGCTACATTTTTCAGATCTGTAAGT
rJMSF052F05+ GACGTTGGATGATATTCCTAGTGGTCCTGTGGCTACANTTTTCAGATCTGTAAGT
____________________________________________________________
consensus ATTGGGACGTTGGATGATATTCCTAGTGGTCCTGTGGCTACATTTTTCAGATCTGTAAGT
. : . : . : . : . : . :
JMSF052F05- CG
JMSF047G20- CGCACATTGGATTTCGATTTTGAGGATG
rJMSF052F05+ CGCACA-TGGATTTCGATTTTGAGGATGAAAATGAAGATCGTTGGCAGTCTGACAAGCCA
____________________________________________________________
consensus CGCACATTGGATTTCGATTTTGAGGATGAAAATGAAGATCGTTGGCAGTCTGACAAGCCA
. : . : . : . : . : . :
rJMSF052F05+ CCATCACTGTACATATTTATCAACTGCAGCACTCGTGATCTCTCTTCCATAGAGAAGTAT
____________________________________________________________
consensus CCATCACTGTACATATTTATCAACTGCAGCACTCGTGATCTCTCTTCCATAGAGAAGTAT
. : . : . : . : . : . :
rJMSF011B16+ TAATCTAGAACTGGACACTTTG
rJMSF047G20+ TTAATCTAGAACTGGACACTTTG
rJMSF052F05+ GTGGAGAAATTTGCCCCTTCCACCCCTAGTCTGCTGTTTAATCTAGAACTGGACACTTTG
rJMSF018E05+ TTAATCTAGAACTGGACACTTTG
____________________________________________________________
consensus GTGGAGAAATTTGCCCCTTCCACCCCTAGTCTGCTGTTTAATCTAGAACTGGACACTTTG
. : . : . : . : . : . :
rJMSF026L22+ TCTTTCA
rJMSF011B16+ CGTGCTGACCTGGGTCTTTTGGGATTTCCACCCAAAGAGTTGCATTATCAATTTCTTTCA
rJMSF047G20+ CGTGCTGACCTGGGTCTTTTGGGATTTCCACCCAAAGAGTTGCATTATCAATTTCTTTCA
rJMSF052F05+ CGTGCTGACCTGGGTCTTTTGGGATTTCCACCCAAAGAGTTGCATTATCAATTTCTTTCA
rJMSF018E05+ CGTGCTGACCTGGGTCTTTTGGGATTTCCACCCAAAGAGTTGCATTATCAATTTCTTTCA
____________________________________________________________
consensus CGTGCTGACCTGGGTCTTTTGGGATTTCCACCCAAAGAGTTGCATTATCAATTTCTTTCA
. : . : . : . : . : . :
rJMSF026L22+ CAATTCACCCCTGTATTTTACATTCGAACTCGAGAGTATTCAAAGACAGTTGCAGTGGCA
rJMSF011B16+ CAATTCACCCCTGTATTTTACATTCGAACTCGAGAGTATTCAAAGACAGTTGCAGTGGCA
rJMSF047G20+ CAATTCACCCCTGTATTTTACATTCGAACTCGAGAGTATTCAAAGACAGTTGCAGTGGCA
rJMSF052F05+ CAATTCACCCCTGTATTTTACATTCGAACTCGAGAGTATTCAAAGACAGTTGCAGTGGCA
rJMSF018E05+ CAATTCACCCCTGTATTTTACATTCGAACTCGAGAGTATTCAAAGACAGTTGCAGTGGCA
____________________________________________________________
consensus CAATTCACCCCTGTATTTTACATTCGAACTCGAGAGTATTCAAAGACAGTTGCAGTGGCA
. : . : . : . : . : . :
rJMSF026L22+ CCCTACATTGTAAACTACAATGGAGCTTTGTTTCGTCAATACCCTGGGCCTTGGCAGGTG
rJMSF011B16+ CCCTACATTGTAAACTACAATGGAGCTTTGTTTCGTCAATACCCTGGGCCTTGGCAGGTG
rJMSF047G20+ CCCTACATTGTAAACTACAATGGAGCTTTGTTTCGTCAATACCCTGGGCCTTGGCAGGTG
rJMSF052F05+ CCCTACATTGTAAACTACAATGGAGCTTTGTTTCGTCAATACCCTGGGCCTTGGCAGGTG
rJMSF018E05+ CCCTACATTGTAAACTACAATGGAGCTTTGTTTCGTCAATACCCTGGGCCTTGGCAGGTG
____________________________________________________________
consensus CCCTACATTGTAAACTACAATGGAGCTTTGTTTCGTCAATACCCTGGGCCTTGGCAGGTG
. : . : . : . : . : . :
rJMSF026L22+ ATGCTGAAACAATCAGATGGTTCTTATGCATGTGTTGCAGAGAGTGATTCTCGGTTCACA
rJMSF011B16+ ATGCTGAAACAATCAGATGGTTCTTATGCATGTGTTGCAGAGAGTGATTCTCGGTTCACA
rJMSF047G20+ ATGCTGAAACAATCAGATGGTTCTTATGCATGTGTTGCAGAGAGTGATTCTCGGTTCACA
rJMSF052F05+ ATGCTGAAACAATCAGATGGTTCTTATGCATGTGTTGCAGAGAGTGATTCTCGGTTCACA
rJMSF018E05+ ATGCTGAAACAATCAGATGGTTCTTATGCATGTGTTGCAGAGAGTGATTCTCGGTTCACA
____________________________________________________________
consensus ATGCTGAAACAATCAGATGGTTCTTATGCATGTGTTGCAGAGAGTGATTCTCGGTTCACA
. : . : . : . : . : . :
rJMSF026L22+ CTTGGAGAAACCAAGGAAGAGCTGTTGCGGGTCCTAGGTCTTCAGGAGGAGAAAGGAAGC
rJMSF011B16+ CTTGGAGAAACCAAGGAAGAGCTGTTGCGGGTCCTAGGTCTTCAGGAGGAGAAAGGAAGC
rJMSF047G20+ CTTGGAGAAACCAAGGAAGAGCTGTTGCGGGTCCTAGGTCTTCAGGAGGAGAAAGGAAGC
rJMSF052F05+ CTTGGAGAAACCAAGGAAGAGCTGTTGCGGGTCCTAGGTCTTCAGGAGGAGAAAGGAAGC
rJMSF018E05+ CTTGGAGAAACCAAGGAAGAGCTGTTGCGGGTCCTAGGTCTTCAGGAGGAGAAAGGAAGC
____________________________________________________________
consensus CTTGGAGAAACCAAGGAAGAGCTGTTGCGGGTCCTAGGTCTTCAGGAGGAGAAAGGAAGC
. : . : . : . : . : . :
rJMSF026L22+ TCGCTTGAATTTCTTCGAAGAGGATATAAGTCTGCAACATGGTGGGAAGAAGATGTTGAG
rJMSF011B16+ TCGCTTGAATTTCTTCGAAGAGGATATAAGTCTGCAACATGGTGGGAAGAAGATGTTGAG
rJMSF047G20+ TCGCTTGAATTTCTTCGAAGAGGATATAAGTCTGCAACATGGTGGGAAGAAGATGTTGAG
rJMSF052F05+ TCGCTTGAATTTCTTCGAAGAGGATATAAGTCTGCAACATGGTGGGAAGAAGATGTTGAG
rJMSF018E05+ TCGCTTGAATTTCTTCGAAGAGGATATAAGTCTGCAACATGGTGGGAAGAAGATGTTGAG
____________________________________________________________
consensus TCGCTTGAATTTCTTCGAAGAGGATATAAGTCTGCAACATGGTGGGAAGAAGATGTTGAG
. : . : . : . : . : . :
rJMSF026L22+ TTGGAAAAGTCTTCAGCTTGGCGTAGTTGAACAGATACAATCGATCATAACGACATGATT
rJMSF011B16+ TTGGAAAAGTCTTCAGCTTGGCGTAGTTGAACAGATACAATCGATCATAACGACATGATT
rJMSF047G20+ TTGGAAAAGTCTTCAGCTTGGCGTAGTTGAACAGATACAATCGATCATAACGACATGATT
rJMSF052F05+ TTGGAAAAGTCTTCAGCTTGGCGTAGTTGAACAGATACAATCGATCATAACGACATGATT
rJMSF018E05+ TTGGAAAAGCCTTCAGCTTGGCGTAGTTGAACAGATACAATCGATCATAACGACATGATT
____________________________________________________________
consensus TTGGAAAAGTCTTCAGCTTGGCGTAGTTGAACAGATACAATCGATCATAACGACATGATT
. : . : . : . : . : . :
rJMSF026L22+ GAAGCAGCCTAAAAGAGAAGAACCCCACTGTGCATCACTTAGCCTTGGATGCAAATGTTT
rJMSF011B16+ GAAGCAGCCTAAAAGAGAAGAACCCCACTGTGCATCACTTAGCCTTGGATGCAAATGTTT
rJMSF047G20+ GAAGCAGCCTAAAAGAGAAGAACCCCACTGTGCATCACTTAGCCTTGGATGCAAATGTTT
rJMSF052F05+ GAAGCAGCCTAAAAGAGAAGAACCCCACTGTGCATCACTTAGCCTTGGATGCAAATGTTT
rJMSF018E05+ GAAGCAGCCTAAAAGAGAAGAACCCCACTGTGCATCACTTAGCCTTGGATGCAAATGTTT
____________________________________________________________
consensus GAAGCAGCCTAAAAGAGAAGAACCCCACTGTGCATCACTTAGCCTTGGATGCAAATGTTT
. : . : . : . : . : . :
rJMSF026L22+ GTGTAATCTTGGATGAGCTTCAAGTCCTACACTACAAAAGCTGCATAAAATTTGCAAACA
rJMSF011B16+ GTGTAATCTTGGATGAGCTTCAAGTCCTACACTACAAAAGCTGCATAAAATTTGCAAACA
rJMSF047G20+ GTGTAATCTTGGATGAGCTTCAAGTCCTACACTACAAAAGCTGCATAAAATTTGCAAACA
rJMSF052F05+ GTGTAATCTTGGATGAGCTTCAAGTCCTACACTACAAAAGCTGCATAAAATTTGCAAACA
rJMSF018E05+ GTGTAATCTTGGATGAGCTTCAAGTCCTACACTACAAAAGCTGCATAAAATTTGCAAACA
____________________________________________________________
consensus GTGTAATCTTGGATGAGCTTCAAGTCCTACACTACAAAAGCTGCATAAAATTTGCAAACA
. : . : . : . : . : . :
rJMSF026L22+ TTTCCTTTTTTACTTCTCTCCTCTACTATGTTAGTATCAATTTTGTTTTTTTTGTTTTTC
rJMSF011B16+ TTTCCTTTTTTACTTCTCTCCTCTACTATGTTAGTATCAATTTTGTTTTTTTTGTTTTTC
rJMSF047G20+ TTTCCTTTTTTACTTCTCTCCTCTACTATGTTAGTATCAATTTTGTTTTTTTTGTTTTTC
rJMSF052F05+ TTTCCTTTTTTACTTCTCTCCTCTACTATGTTAGTATCAATTTTGTTTTTTTTGTTTTTC
rJMSF018E05+ TTTCCTTTTTTACTTCTCTCCTCTACTATGTTAGTATCAATTTTGTTTTTTTTGTTTTTC
____________________________________________________________
consensus TTTCCTTTTTTACTTCTCTCCTCTACTATGTTAGTATCAATTTTGTTTTTTTTGTTTTTC
. : . : . : . : . : . :
rJMSF026L22+ CTGTCAAATTGGGATTTTGTGTTTGATTGAAGTGAAGACTTGGCCTCTAGGGACTACAAT
rJMSF011B16+ CTGTCAAATTGGGATTTTGTGTTTGATTGAAGTGAAGACTTGGCCTCTAGGGACTACAAT
rJMSF047G20+ CTGTCAAATTGGGATTTTGTGTTTGATTGAAGTGAAGACTTGGCCTCTAGGGACTACAAT
rJMSF052F05+ CTGTCAAATTGGGATTTTGTGTTTGATTGAAGTGAAGACTTGGCCTCTAGGGACTACAAT
rJMSF018E05+ CTGTCAAATTGGGATTTTGTGTTTGATTGAAGTGAAGACTTGGCCTCTAGGGACTACAAT
____________________________________________________________
consensus CTGTCAAATTGGGATTTTGTGTTTGATTGAAGTGAAGACTTGGCCTCTAGGGACTACAAT
. : . : . : . : . : . :
rJMSF026L22+ CTTTTCCTGTATAATGTATCCCTCCTACATGCAATTCTCTCTAT
rJMSF011B16+ CTTTTCCTGTATAATGTATCCCTCCTACATGCAATTCTCTCTAT
rJMSF047G20+ CTTTTCC
rJMSF052F05+ CTTTTCCTGTATAATGTATCCCTCCTACATGCAATTCTCTCTAT
rJMSF018E05+ CTTTTCCTGTATAATGTATCCCTCCTACATGCAATTCTCTCTATGGGAGGGAATTGACTG
____________________________________________________________
consensus CTTTTCCTGTATAATGTATCCCTCCTACATGCAATTCTCTCTATGGGAGGGAATTGACTG