Contig 013940:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF017H10-                               GGACATTTCTGAGCTCCAACGCAATTGAAAATTGAGATGG
                      ____________________________________________________________
consensus                                 GGACATTTCTGAGCTCCAACGCAATTGAAAATTGAGATGG
 
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JMSF017H10-           CAAGCGATTTGACCAAACTTTCTGAATCTGTCTACGACTTCATCGTTAAGGGAAAAATTC
                      ____________________________________________________________
consensus             CAAGCGATTTGACCAAACTTTCTGAATCTGTCTACGACTTCATCGTTAAGGGAAAAATTC
 
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JMSF017H10-           TTACTGACGATATCATTAGAAACTGGACCATTTTTATTGCTTGCTACAACAAACAATTGA
                      ____________________________________________________________
consensus             TTACTGACGATATCATTAGAAACTGGACCATTTTTATTGCTTGCTACAACAAACAATTGA
 
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JMSF017H10-           ACTGGGGAAGCGTAATCACATAATCATTAATCAAGAAATGTCTTTCTTTTAACTTAAGAC
                      ____________________________________________________________
consensus             ACTGGGGAAGCGTAATCACATAATCATTAATCAAGAAATGTCTTTCTTTTAACTTAAGAC
 
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JMSF017H10-           AGCAACAAAATGAAGAATTATAGATTTTGGTTGCATATATTTACCCTTGTTTGTTTTGAC
                      ____________________________________________________________
consensus             AGCAACAAAATGAAGAATTATAGATTTTGGTTGCATATATTTACCCTTGTTTGTTTTGAC
 
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JMSF017H10-           AGTCTGATGGATGTTCTGCAGCTACAGAATAAGTGTTTTTAGTTTCATCATGTCTTTGAC
rJMSF017H10+                               CTACAGAATAAGTGTTTTTAGTTTCATCATGTCTTNGAC
                      ____________________________________________________________
consensus             AGTCTGATGGATGTTCTGCAGCTACAGAATAAGTGTTTTTAGTTTCATCATGTCTTTGAC
 
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JMSF017H10-           TACTTAGCTTAGGGAGGGAAATAATGCAGCAGGTGATGGATGGGTAGTGTTATTTTGCAG
rJMSF018H10+                                                                   CAG
rJMSF017H10+          TACTTAGCNTAGGGAGGGAAATAATGCAGCAGGTGATGGATGGGTAGTGTTATTTTGCAG
                      ____________________________________________________________
consensus             TACTTAGCTTAGGGAGGGAAATAATGCAGCAGGTGATGGATGGGTAGTGTTATTTTGCAG
 
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JMSF017H10-           GATGCGAAAGGCAACGATGTAGATCTCAACATCTATAAGGGAAAAGTCCTCCTAATTGTC
rJMSF018H10+          GATGNGAAAGGCANNGATGTAGATCTCAACATCTATAAGGGAAAAGTCGTCCTAANGGTC
rJMSF017H10+          GATGCGAAAGGCAACGATGTAGATCTCAACATCTATAAGGGAAAAGTCCTCCTAATTGTC
                      ____________________________________________________________
consensus             GATGCGAAAGGCAACGATGTAGATCTCAACATCTATAAGGGAAAAGTCCTCCTAATTGTC
 
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JMSF017H10-           AATGTTGCTTCCAAGTGTGGGATGACGAACTCAAACTACACTGAGCTCAATCAATTGTAC
rJMSF018H10+          AATGTTGCTTCCAAGTGTGGGATGANGNACTCAAAATACNCNGAGCTCNATCAATTGTAC
rJMSF017H10+          AATGTTGCTTCCAAGTGTGGGATGACGAACTCAAACTACACTGAGCTCAATCAATTGTAC
                      ____________________________________________________________
consensus             AATGTTGCTTCCAAGTGTGGGATGACGAACTCAAACTACACTGAGCTCAATCAATTGTAC
 
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JMSF017H10-           GAGAAGTACAGACACCAAGGCCTGGAAATACTAGCATTTCCCTGCAATCAGTTTGGAGAG
rJMSF018H10+          GAGAAGTACAGACACCAAGGCCTGGAAATCCTAGCANTTCCCTGCAATCAGTTNGGAGAG
rJMSF017H10+          GAGAAGTACAGACACCAAGGCCTGGAAATACTAGCATTTCCCTGCAATCAGTTTGGAGAG
                      ____________________________________________________________
consensus             GAGAAGTACAGACACCAAGGCCTGGAAATACTAGCATTTCCCTGCAATCAGTTTGGAGAG
 
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JMSF017H10-           GA                                                          
rJMSF018H10+          GAGGAACCAGGAAGCAATGNTCAGATATTAGATNNNGTTTGCACTCGTTTCAAGTCAGAG
rJMSF017H10+          GAGGAACCAGGAAGCAATGATCAGATATTAGATTTTGTTTGCACTCGTTTCAAGTCAGAG
                      ____________________________________________________________
consensus             GAGGAACCAGGAAGCAATGATCAGATATTAGATTTTGTTTGCACTCGTTTCAAGTCAGAG
 
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rJMSF018H10+          TTNCCCGTNNTTGGCAAGANTGAAGTGAATGGTGAAAATGCTTCTCCCCTTTATAAGTAT
rJMSF017H10+          TTCCCCGTCTTTGGCAAGATTGAAGTGAATGGTGAAAATGCTTCTCCCCTTTATAAGTAT
                      ____________________________________________________________
consensus             TTCCCCGTCTTTGGCAAGATTGAAGTGAATGGTGAAAATGCTTCTCCCCTTTATAAGTAT
 
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rJMSF018H10+          ATGAAATTAGGGAAGTGGGGAATATTTGGAGATGACATTCAGTGGAACTTTGCAAAGTTT
rJMSF017H10+          ATGAAATTAGGGAAGTGGGGAATATTTGGAGATGACATTCAGTGGAACTTTGCAAAGTTT
                      ____________________________________________________________
consensus             ATGAAATTAGGGAAGTGGGGAATATTTGGAGATGACATTCAGTGGAACTTTGCAAAGTTT
 
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rJMSF018H10+          CTGGTTGATCAGAGAGGGCAGCCTGTCGATNGNTATTATCCCACAACATCACCCCTTACC
rJMSF017H10+          CTGGTTGATCAGAGAGGGCAGCCTGTCGATCGCTATTATCCCACAACATCACCCCTTACC
                      ____________________________________________________________
consensus             CTGGTTGATCAGAGAGGGCAGCCTGTCGATCGCTATTATCCCACAACATCACCCCTTACC
 
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rJMSF018H10+          ATTGAGAGAGATGTACAGAAACTACTAGGAAAAAAGGAATAGNGTGNTCTNNGTGCTACT
rJMSF017H10+          ATTGAGAGAGATGTACAGAAACTACTAGGAAAAAAGGAATAGTGTGATCTATGTGCTACT
                      ____________________________________________________________
consensus             ATTGAGAGAGATGTACAGAAACTACTAGGAAAAAAGGAATAGTGTGATCTATGTGCTACT
 
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rJMSF018H10+          CACTCACTTTCATGGAAATCTTAGT                                   
rJMSF017H10+          CACTCACTTTCATGGAAATCTTAGTATTCATTCTCCATCAGATTGGTGGTATAAATGCTC
                      ____________________________________________________________
consensus             CACTCACTTTCATGGAAATCTTAGTATTCATTCTCCATCAGATTGGTGGTATAAATGCTC
 
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rJMSF017H10+          TAATCTATACAACACTAGCAGTGCATCAAAATCACAAATCAAATGTTCTTCTGGATTGGA
                      ____________________________________________________________
consensus             TAATCTATACAACACTAGCAGTGCATCAAAATCACAAATCAAATGTTCTTCTGGATTGGA
 
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rJMSF017H10+          TTTGCAAAATCTTCTTGGTTTCTTTGTGTATTGTGACAGGCAAGTGATGTTTTAATGTAC
                      ____________________________________________________________
consensus             TTTGCAAAATCTTCTTGGTTTCTTTGTGTATTGTGACAGGCAAGTGATGTTTTAATGTAC