Contig 013938:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016O04Sequence336003629 (2)ref|XP_009597467.1|9e-51PREDICTED: mini-chromosome maintenance complex-binding protein [Nicotiana tomen580013938 (2)ref|XP_009799229.1|3e-41PREDICTED: mini-chromosome maintenance complex-binding protein [Nicotiana sylve
JMSF035M23Sequence618003629 (2)ref|XP_009597467.1|9e-94PREDICTED: mini-chromosome maintenance complex-binding protein [Nicotiana tomen499013938 (2)ref|XP_010695921.1|1e-22PREDICTED: mini-chromosome maintenance complex-binding protein [Beta vulgaris s

Alignment

This contig is upended


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rJMSF016O04+                              CCGAGGGAAAATCAAACATACTNCCNGCTGATATAGTTTT
                      ____________________________________________________________
consensus                                 CCGAGGGAAAATCAAACATACTNCCNGCTGATATAGTTTT
 
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rJMSF035M23+                        CTTCAGTAACTTCCTNTGAAGAAGTTGAGACTGGTGTGCNGTGTGG
rJMSF016O04+          GCCNTTCCGTCCAACTTCNGTAACTTCCTATGAAGAAGTTGAGACTGATGTGCTGTGTGG
                      ____________________________________________________________
consensus             GCCNTTCCGTCCAACTTCAGTAACTTCCTATGAAGAAGTTGAGACTGGTGTGCTGTGTGG
 
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rJMSF035M23+          TTGGCGTTGGTACTTGGGTACNANGAAATCNTTGTCNCNTACCNTTGCCCCGGAAATGCN
rJMSF016O04+          TTGGCGTTGGTACTTGGGTACAATGAAATCNTTGTCNCATACCNTTGCCCCGGAAATGCN
                      ____________________________________________________________
consensus             TTGGCGTTGGTACTTGGGTACAATGAAATCNTTGTCNCATACCNTTGCCCCGGAAATGCN
 
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rJMSF035M23+          GAAGGTGTTGGAAGATGATTTGGTTGCNNCCNGGCNAGCTGATNGTAGCCTGGGCNGCCN
rJMSF016O04+          GAAGGTGTTGGAAGATGATTTGGTTGCAGCCNGGCAAGCTGATNGTAGCCTGGGCNGCCN
                      ____________________________________________________________
consensus             GAAGGTGTTGGAAGATGATTTGGTTGCAGCCNGGCAAGCTGATNGTAGCCTGGGCNGCCN
 
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rJMSF035M23+          AGAATTTAGCNGATTGTTGACAATGGGGCGTTTGATATNTNTTAGTTTCGGNGAAACCNG
rJMSF016O04+          AGAATTTAGCNGATTGTTGNCAATGGGGCGTTTGATATNTNTTAGTTTCGGNGAAACCNG
                      ____________________________________________________________
consensus             AGAATTTAGCNGATTGTTGACAATGGGGCGTTTGATATNTNTTAGTTTCGGNGAAACCNG
 
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rJMSF035M23+          CTTGTCGGTTGAGCCCTGGCAAATGGTCAAAGAGTTGGNGNGACTCCNCAAAGAGAGACT
rJMSF016O04+          CTTGTCGGTTGAGCCCTGGCAAATGGTCAAAGAGTTGGNGNGACTCCNCAAAGAGAGACT
                      ____________________________________________________________
consensus             CTTGTCGGTTGAGCCCTGGCAAATGGTCAAAGAGTTGGNGNGACTCCNCAAAGAGAGACT
 
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rJMSF035M23+          CAATGGACGCNTGTAAAGTTTNTTTTGTTTCNGACNCCNTTTAGTTAGGTACTAAAATTG
rJMSF016O04+          CAATGGNCGCNNGTAAAGTTTNTTTTGTTTCNGACNCCTTTTAGTTAGGTACTAAAATTG
                      ____________________________________________________________
consensus             CAATGGACGCNTGTAAAGTTTNTTTTGTTTCNGACNCCTTTTAGTTAGGTACTAAAATTG
 
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rJMSF035M23+          NGTAAAAAAAAAAACGATAATATTGTGTGTTTTTTTTGGTTGTTGGAAGTGCATCCATTA
rJMSF016O04+          NGTAAAAAAAAAAACGATAATATTGTGTGTTTTTTTTGGTTGTTGGAAGTGCATCCATTA
                      ____________________________________________________________
consensus             NGTAAAAAAAAAAACGATAATATTGTGTGTTTTTTTTGGTTGTTGGAAGTGCATCCATTA
 
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rJMSF035M23+          AATCCTCTCTGGCTGTCTGTCTGTAGGGTTATTAAATTATAAGCTCTGCTCAGATTGGAC
rJMSF016O04+          AATCCTCTCTGGCTGTCTGTCTGTAGGGTTATTAAATTATAAGCTCTGCTCAGATTGGAC
                      ____________________________________________________________
consensus             AATCCTCTCTGGCTGTCTGTCTGTAGGGTTATTAAATTATAAGCTCTGCTCAGATTGGAC
 
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rJMSF035M23+          CCTTTTTCATCAGATCAGAGGGCTCCATAATGG                           
rJMSF016O04+          CCTTTTTCATCAGATCAGAGGGCTCCATAATGGTGTATTCAGATTGTATGTTTTATGTTA
                      ____________________________________________________________
consensus             CCTTTTTCATCAGATCAGAGGGCTCCATAATGGTGTATTCAGATTGTATGTTTTATGTTA