Contig 013929:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF015M19Sequence463002354 (4)712013929 (4)ref|XP_008245060.1|3e-49PREDICTED: enhancer of polycomb homolog 2 [Prunus mume]
JMSF031G21Sequence648002354 (4)724013929 (4)ref|XP_008372925.1|8e-23PREDICTED: enhancer of polycomb homolog 2-like isoform X2 [Malus domestica]
JMSF033C13Sequence671002354 (4)772013929 (4)ref|XP_008372925.1|1e-22PREDICTED: enhancer of polycomb homolog 2-like isoform X2 [Malus domestica]
JMSF035O23Sequence671002354 (4)612013929 (4)ref|XP_008372925.1|3e-23PREDICTED: enhancer of polycomb homolog 2-like isoform X2 [Malus domestica]

Alignment

This contig is upended


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rJMSF033C13+                                         GTGCATGGACATTTTTTTCGCCTTTTGGT
                      ____________________________________________________________
consensus                                            GTGCATGGACATTTTTTTCGCCTTTTGGT
 
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rJMSF033C13+          TTTACTTAANCAAGGGAATGTGGATGCATATAATCATATGTATGTATGTGCATATATACA
                      ____________________________________________________________
consensus             TTTACTTAANCAAGGGAATGTGGATGCATATAATCATATGTATGTATGTGCATATATACA
 
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rJMSF033C13+          TATTTATGTATGTATGTGCATATAGGTAACTAGATGTTGAATAGGGATATGAAATTAAGG
                      ____________________________________________________________
consensus             TATTTATGTATGTATGTGCATATAGGTAACTAGATGTTGAATAGGGATATGAAATTAAGG
 
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rJMSF033C13+          TTTCTTCATTTCTGACATAGGTGCACTGTGTTAGAGAAACACATTATGGAACTACCATTT
                      ____________________________________________________________
consensus             TTTCTTCATTTCTGACATAGGTGCACTGTGTTAGAGAAACACATTATGGAACTACCATTT
 
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rJMSF031G21+                              GGATCCTAATGAGCCAATTCTGCTGTTCACAAAACCTCTG
rJMSF033C13+          CTTATAACATGGTAAATGCAGGATCCTAATGAGCCAATTCTGCTGTTCACAAAACCTCTG
rJMSF035O23+                              GGATCCTAATGAGCCAATTCTGCTGTTCACAAAACCTCTG
rJMSF015M19+                              GGATCCTAATGAGCCAATTCTGCTGTTCACAAAACCTCTG
                      ____________________________________________________________
consensus             CTTATAACATGGTAAATGCAGGATCCTAATGAGCCAATTCTGCTGTTCACAAAACCTCTG
 
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rJMSF031G21+          GATCCCGAGAAACTGGCAGCTGCAGGCATTATGCCACCAACAGATTCATCAATGGCCAAT
rJMSF033C13+          GATCCCGAGAAACTGGCAGCTGCAGGCATTATGCCACCAACAGATTCATCAATGGCCAAT
rJMSF035O23+          GATCCCGAGAAACTGGCAGCTGCAGGCATTATGCCACCAACAGATTCATCAATGGCCAAT
rJMSF015M19+          GATCCCGAGAAACTGGCAGCTGCAGGCATTATGCCACCAACAGATTCATCAATGGCCAAT
                      ____________________________________________________________
consensus             GATCCCGAGAAACTGGCAGCTGCAGGCATTATGCCACCAACAGATTCATCAATGGCCAAT
 
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rJMSF031G21+          GTCATATCAGGGCGCCCATTTAATTTCCGTGGACGAATAGGCAGGGGTGGCCGACTGGTG
rJMSF033C13+          GTCATATCAGGGCGCCCATTTAATTTCCGTGGACGAATAGGCAGGGGTGGCCGACTGGTG
rJMSF035O23+          GTCATATCAGGGCGCCCATTTAATTTCCGTGGACGAATAGGCAGGGGTGGCCGACTGGTG
rJMSF015M19+          GTCATATCAGGGCGCCCATTTAATTTCCGTGGACGAATAGGCAGGGGTGGCCGACTGGTG
                      ____________________________________________________________
consensus             GTCATATCAGGGCGCCCATTTAATTTCCGTGGACGAATAGGCAGGGGTGGCCGACTGGTG
 
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rJMSF031G21+          TTTGACAGATGGAATCCACTTATGCATACTCCAATTGAGTGCGGTGATACTTTATACCTA
rJMSF033C13+          TTTGACAGATGGAATCCACTTATGCATACTCCAATTGAGTGCGGTGATACTTTATACCTA
rJMSF035O23+          TTTGACAGATGGAATCCACTTATGCATACTCCAATTGAGTGCGGTGATACTTTATACCTA
rJMSF015M19+          TTTGACAGATGGAATCCACTTATGCATACTCCAATTGAGTGCGGTGATACTTTATACCTA
                      ____________________________________________________________
consensus             TTTGACAGATGGAATCCACTTATGCATACTCCAATTGAGTGCGGTGATACTTTATACCTA
 
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rJMSF031G21+          CCACCAAAGCCCCGGCCAGCCACCCATCGCTGATATGAAATGTTATTTCCAGTTTCTGAA
rJMSF033C13+          CCACCAAAGCCCCGGCCAGCCACCCATCGCTGATATGAAATGTTATTTCCAGTTTCTGAA
rJMSF035O23+          CCACCAAAGCCCCGGCCAGCCACCCATCGCTGATATGAAATGTTATTTCCAGTTTCTGAA
rJMSF015M19+          CCACCAAAGCCCCGGCCAGCCACCCATCGCTGATATGAAATGTTATTTCCAGTTTCTGAA
                      ____________________________________________________________
consensus             CCACCAAAGCCCCGGCCAGCCACCCATCGCTGATATGAAATGTTATTTCCAGTTTCTGAA
 
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rJMSF031G21+          CTTGGAAGAGTATGCTCTATGGTTCTATGCTCTAGGTTTACCATAGCTCATTGTGCAATT
rJMSF033C13+          CTTGGAAGAGTATGCTCTATGGTTCTATGCTCTAGGTTTACCATAGCTCATTGTGCAATT
rJMSF035O23+          CTTGGAAGAGTATGCTCTATGGTTCTATGCTCTAGGTTTACCATAGCTCATTGTGCAATT
rJMSF015M19+          CTTGGAAGAGTATGCTCTATGGTTCTATGCTCTAGGTTTACCATAGCTCATTGTGCAATT
                      ____________________________________________________________
consensus             CTTGGAAGAGTATGCTCTATGGTTCTATGCTCTAGGTTTACCATAGCTCATTGTGCAATT
 
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rJMSF031G21+          AACATTGTATTCTTCAAGGTTAGGAAAAAGAGCACACCCTTTGTACAATTAGCGGTATTC
rJMSF033C13+          AACATTGTATTCTTCAAGGTTAGGAAAAAGAGCACACCCTTTGTACAATTAGCGGTATTC
rJMSF035O23+          AACATTGTATTCTTCAAGGTTAGGAAAAAGAGCACACCCTTTGTACAATTAGCGGTATTC
rJMSF015M19+          AACATTGTATTCTTCAAGGTTAGGAAAAAGAGCACACCCTTTGTACAATTAGCGGTATTC
                      ____________________________________________________________
consensus             AACATTGTATTCTTCAAGGTTAGGAAAAAGAGCACACCCTTTGTACAATTAGCGGTATTC
 
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rJMSF031G21+          TCGTGTTTTTTTCGAGGCTGGTCGGTAGAAAGGAAGAGCCCAACAGAGCGTCTTTGTTGC
rJMSF033C13+          TCGTGTTTTTTTCGAGGCTAGTCGGTAGAAAGGAAGAGCCCAACAGAGCGTCTTTGTTGC
rJMSF035O23+          TCGTGTTTTTTTCGAGGCTAGTCGGTAGAAAGGAAGAGCCCAACAGAGCGTCTTTGTTGC
rJMSF015M19+          TCGTGTTTTTTTCGAGGCTAGTCGGTAGAAAGGAAGAGCCCAACAGAGCGTCTTTGTTGC
                      ____________________________________________________________
consensus             TCGTGTTTTTTTCGAGGCTAGTCGGTAGAAAGGAAGAGCCCAACAGAGCGTCTTTGTTGC
 
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rJMSF031G21+          GGATTTAGCAACATGATG                                          
rJMSF033C13+          GGATTTAGCAACATGATG                                          
rJMSF035O23+          GGATTTAGCAACATGATG                                          
rJMSF015M19+          GGATTTAGCAACATGATGTTTGGAGTAAATGCGTAGATAGTGTTTTAAATGAAATGGAAT
                      ____________________________________________________________
consensus             GGATTTAGCAACATGATGTTTGGAGTAAATGCGTAGATAGTGTTTTAAATGAAATGGAAT