| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF012G02 | Sequence | 231 | 013287 (8) | gb|KJB60504.1| | 8e-09 | hypothetical protein B456_009G309100 [Gossypium raimondii] | 726 | 013911 (3) | ref|XP_009604635.1| | 5e-106 | PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic [Nicotiana |
| JMSF013K11 | Sequence | 482 | 013911 (3) | ref|XP_009762796.1| | 2e-34 | PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like [Nicot | 729 | 013911 (3) | ref|XP_009604635.1| | 5e-138 | PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic [Nicotiana |
This contig is upended
. : . : . : . : . : . :
JMSF013K11- GACTTTCTTATCACAATGGAGGATATTA
____________________________________________________________
consensus GACTTTCTTATCACAATGGAGGATATTA
. : . : . : . : . : . :
JMSF013K11- CTAGAAGAATACCAGACTGTTCTCTTGAAGTTTCCTTTATCTAAATATATAAAGCAAGAA
____________________________________________________________
consensus CTAGAAGAATACCAGACTGTTCTCTTGAAGTTTCCTTTATCTAAATATATAAAGCAAGAA
. : . : . : . : . : . :
JMSF013K11- AGACTACAAAAGGGTCAAATTTTGAAGGTTGTTTGTTTCTTTGCAGTTCTTGTTTTTTGT
____________________________________________________________
consensus AGACTACAAAAGGGTCAAATTTTGAAGGTTGTTTGTTTCTTTGCAGTTCTTGTTTTTTGT
. : . : . : . : . : . :
JMSF013K11- TTTTGTTGAATTGAAATGGCAGTAGCTATGGCTTCTGGTGGGATTGTTTCTGGGCTTTGC
____________________________________________________________
consensus TTTTGTTGAATTGAAATGGCAGTAGCTATGGCTTCTGGTGGGATTGTTTCTGGGCTTTGC
. : . : . : . : . : . :
JMSF013K11- AGTGGTTTAAGAGCGATCGAGAAGCAGCCCATTTCAATCCGTGGTGTTCTTAGAGGCTCT
____________________________________________________________
consensus AGTGGTTTAAGAGCGATCGAGAAGCAGCCCATTTCAATCCGTGGTGTTCTTAGAGGCTCT
. : . : . : . : . : . :
JMSF013K11- TTTGAATTGGGTTCAGTTCATAGGGTTGGCATTGTTCCCAAGAGGTTAGCGTTGTCAGCA
____________________________________________________________
consensus TTTGAATTGGGTTCAGTTCATAGGGTTGGCATTGTTCCCAAGAGGTTAGCGTTGTCAGCA
. : . : . : . : . : . :
JMSF013K11- AGTACATGTCCAAAAGCATCCTCGTCCACTGTTGAGACTGCTGAAGTTCCAACACCAAAA
rJMSF013K11+ AAA
____________________________________________________________
consensus AGTACATGTCCAAAAGCATCCTCGTCCACTGTTGAGACTGCTGAAGTTCCAACACCAAAA
. : . : . : . : . : . :
JMSF013K11- GTCATAATAGATCTGGATTCAGACCCAGATGCGACTGTGGTAGAGGTCACCTTCGGGGAT
rJMSF013K11+ GTCATAATAGATCTGGATTCAGACCCAGATGCGACTGTGGTAGAGGTCACCTTCGGGGAT
____________________________________________________________
consensus GTCATAATAGATCTGGATTCAGACCCAGATGCGACTGTGGTAGAGGTCACCTTCGGGGAT
. : . : . : . : . : . :
JMSF013K11- CGCCTAGGAGCACTAATCGATACNATGAATGCGC
rJMSF013K11+ CGCCTAGGAGCACTAATCGATACAATGAATGCGCTAAAGAACCTTGGACTTAACGTTACC
rJMSF012G02+ GATACAATGAATGCGCTAAAGAACCTTGGACTTAACGTTACC
____________________________________________________________
consensus CGCCTAGGAGCACTAATCGATACAATGAATGCGCTAAAGAACCTTGGACTTAACGTTACC
. : . : . : . : . : . :
rJMSF013K11+ AAGGCAAACGTCTATCTTGATTCTTCGGGGAAGCACAACAAGTTTGCAATCACAAAAGCT
rJMSF012G02+ AAGGCAAACGTCTATCTTGATTCTTCGGGGAAGCACAACAAGTTTGCAATCACAAAAGCT
____________________________________________________________
consensus AAGGCAAACGTCTATCTTGATTCTTCGGGGAAGCACAACAAGTTTGCAATCACAAAAGCT
. : . : . : . : . : . :
rJMSF013K11+ TCTACAGGTAGAAAAGTTGACGACCCAGAGTTGCTCGAGGCAATTCGTTTAACAATTCTT
rJMSF012G02+ TCTACAGGTAGAAAAGTTGACGACCCAGAGTTGCTCGAGGC-ATTCGTTTAACAATTCTT
____________________________________________________________
consensus TCTACAGGTAGAAAAGTTGACGACCCAGAGTTGCTCGAGGCAATTCGTTTAACAATTCTT
. : . : . : . : . : . :
rJMSF013K11+ AACAATATGCTAGAGTTTCATCCGGAATCAAGTTCCCAGTTAGCTCTGGGTGAAGCTTTT
rJMSF012G02+ AACAATATGCTAGAGTTTCATCCGGAATCAAGT--CCAGTTAGCTCTGGGTGAAGCTTTT
____________________________________________________________
consensus AACAATATGCTAGAGTTTCATCCGGAATCAAGTTCCCAGTTAGCTCTGGGTGAAGCTTTT
. : . : . : . : . : . :
rJMSF013K11+ GGCGTTTTTCAACCAAGTCAAAAGGTTGACGTGGATATAGCAACACATGTCCATGTCTAC
rJMSF012G02+ GGCGTTTTTCAACCAAGTCAAAAGGTTGACGTGGATATAGCAACACATGTCCATGTCTAC
____________________________________________________________
consensus GGCGTTTTTCAACCAAGTCAAAAGGTTGACGTGGATATAGCAACACATGTCCATGTCTAC
. : . : . : . : . : . :
rJMSF013K11+ GATGATGGCCCTGAACGGAGCTTACTCAGTGTGGAGACAGTGGACCGACCTGGATTAATA
rJMSF012G02+ GATGATGGCCCTGAACGGAGCTTACTCAGTGTGGAGACAGTGGACCGACCTGGATTAATA
____________________________________________________________
consensus GATGATGGCCCTGAACGGAGCTTACTCAGTGTGGAGACAGTGGACCGACCTGGATTAATA
. : . : . : . : . : . :
rJMSF013K11+ GTCGATCTTGTAAAGATGATTACTGACATAAACATTGACGTTGAATCAGGAGAATTCGAC
rJMSF012G02+ GTCGATCTTGTAAAGATGATTACTGACATAAACATTGACGTTGAATCAGGAGAATTCGAC
____________________________________________________________
consensus GTCGATCTTGTAAAGATGATTACTGACATAAACATTGACGTTGAATCAGGAGAATTCGAC
. : . : . : . : . : . :
rJMSF013K11+ ACCGAGGGATTGTTGGCTAAGGCGAAATTTCATGTCAGTTACAAGGGTAAAGCTCTAATC
rJMSF012G02+ ACCGAGGGATTGTTGGCTAAGGCGAAATTTCATGTCAGTTACAAGGGTAAAGCTCTAATC
____________________________________________________________
consensus ACCGAGGGATTGTTGGCTAAGGCGAAATTTCATGTCAGTTACAAGGGTAAAGCTCTAATC
. : . : . : . : . : . :
rJMSF013K11+ AAGCCCCTTCAACAGGTTCTTGCAAATAGTCTGCGGTATTTCTTGAGAAG
rJMSF012G02+ AAGCCCCTTCAACAGGTTCTTGCAAATAGTCTGCGGTATTTCTTGAGAAGGCCAACGACA
____________________________________________________________
consensus AAGCCCCTTCAACAGGTTCTTGCAAATAGTCTGCGGTATTTCTTGAGAAGGCCAACGACA
. : . : . : . : . : . :
rJMSF012G02+ GAAGAGTCGAGCTTTTGATGCGTTGCAGGCTGTGGCACGATGAGGCACAATGGTCAATGG
____________________________________________________________
consensus GAAGAGTCGAGCTTTTGATGCGTTGCAGGCTGTGGCACGATGAGGCACAATGGTCAATGG
. : . : . : . : . : . :
rJMSF012G02+ CGCCTGGTAAAATGAATTTATGCCTCATATTTGATTAATATTTGACAGAATCCATTTTGA
____________________________________________________________
consensus CGCCTGGTAAAATGAATTTATGCCTCATATTTGATTAATATTTGACAGAATCCATTTTGA
. : . : . : . : . : . :
rJMSF012G02+ GGTTTACAATGAAAAGAAAAATGCATGTAATTTACAAAAATGCAGTTTGAATACTTCACT
____________________________________________________________
consensus GGTTTACAATGAAAAGAAAAATGCATGTAATTTACAAAAATGCAGTTTGAATACTTCACT