Contig 013908:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011I11Sequence349013908 (2)ref|XP_010646092.1|2e-21PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Vitis 753013908 (2)ref|XP_009773001.1|2e-44PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Nicoti

Alignment

This contig is upended


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JMSF011I11-                                        GAAGAAAATTTCATTATTTTCAACATATCAA
                      ____________________________________________________________
consensus                                          GAAGAAAATTTCATTATTTTCAACATATCAA
 
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JMSF011I11-           GGGGTCATAGTGGCAATAACCTAAGGTAATATAATTCCCCTCTTTGCTTTGTTTACTTCC
rJMSF011I11+                                                          TTGTTTACTTCC
                      ____________________________________________________________
consensus             GGGGTCATAGTGGCAATAACCTAAGGTAATATAATTCCCCTCTTTGCTTTGTTTACTTCC
 
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JMSF011I11-           GGCGTCAGGGTTTCAGATATCGAATCGGGGCTCTTCTCGCCGCTTTGATTCCCTCCGTCA
rJMSF011I11+          GGCGTCAGGGTTTCAGATATCGAATCGGGGCTCTTCTCGCCGCTTTGATTCCCTCCGTCA
                      ____________________________________________________________
consensus             GGCGTCAGGGTTTCAGATATCGAATCGGGGCTCTTCTCGCCGCTTTGATTCCCTCCGTCA
 
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JMSF011I11-           AATCCCCCGCCGGGTTGACGAGTATACAATAGTTCTAATGGATCCTGAAGGTAGAAAATT
rJMSF011I11+          AATCCCCCGCCGGGTTGACGAGTATACAATAGTTCTAATGGATCCTGAAGGTAGAAAATT
                      ____________________________________________________________
consensus             AATCCCCCGCCGGGTTGACGAGTATACAATAGTTCTAATGGATCCTGAAGGTAGAAAATT
 
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JMSF011I11-           TGGAAGAGGGCCTAGAGAGCTAGGAGGTTCAATTGATCTTCTAAATTATTATAAACTTGA
rJMSF011I11+          TGGAAGAGGGCCTAGAGAGCTAGGAGGTTCAATTGATCTTCTAAATTATTATAAACTTGA
                      ____________________________________________________________
consensus             TGGAAGAGGGCCTAGAGAGCTAGGAGGTTCAATTGATCTTCTAAATTATTATAAACTTGA
 
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JMSF011I11-           GCGGCATCATGAATTTTTCTGCAAGAGGTCACTACCGTCATCAATTTCCAAGACTCAGTA
rJMSF011I11+          GCGGCATCATGAATTTTTCTGCAAGAGGTCACTACCGTCATCAATTTCCAAGACTCAGTA
                      ____________________________________________________________
consensus             GCGGCATCATGAATTTTTCTGCAAGAGGTCACTACCGTCATCAATTTCCAAGACTCAGTA
 
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JMSF011I11-           CCTTCACAATGTTGTGGG                                          
rJMSF011I11+          CCTTCACAATGTTGTGGGAGAGACAGAAATTAGGAAAGGAGAAGGAATGGAACTTGATCA
                      ____________________________________________________________
consensus             CCTTCACAATGTTGTGGGAGAGACAGAAATTAGGAAAGGAGAAGGAATGGAACTTGATCA
 
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rJMSF011I11+          GCTGTTCCAAAATTCCACTAGTGTGGGATGCGGACACAAACCGCTGCATCCTTTTCAGTT
                      ____________________________________________________________
consensus             GCTGTTCCAAAATTCCACTAGTGTGGGATGCGGACACAAACCGCTGCATCCTTTTCAGTT
 
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rJMSF011I11+          GGATGTTCTCATGGATGCTTTTCAGCTGCGAGAAGCAACTTCTACCGACCTGCCTTATAC
                      ____________________________________________________________
consensus             GGATGTTCTCATGGATGCTTTTCAGCTGCGAGAAGCAACTTCTACCGACCTGCCTTATAC
 
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rJMSF011I11+          AAAGAAAAGGGCTTCTGGTGGGTCAAATTTGAAAGGTGAAGATAGGGAGGAGAAGCATAA
                      ____________________________________________________________
consensus             AAAGAAAAGGGCTTCTGGTGGGTCAAATTTGAAAGGTGAAGATAGGGAGGAGAAGCATAA
 
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rJMSF011I11+          AAAACACAAACACAAAAATAGGGAATCAAAAAAGGACAAACACAAGAATATAGAGACAAA
                      ____________________________________________________________
consensus             AAAACACAAACACAAAAATAGGGAATCAAAAAAGGACAAACACAAGAATATAGAGACAAA
 
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rJMSF011I11+          AATGGGTTCTAACATGCAGTCTCAACCCCGCGTTGATGCTAGCAGGAACAAAGATAAAGA
                      ____________________________________________________________
consensus             AATGGGTTCTAACATGCAGTCTCAACCCCGCGTTGATGCTAGCAGGAACAAAGATAAAGA
 
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rJMSF011I11+          GTATAAGAGAACTGTGGATCATAGTTTTGGTTATGACCACTACTTGAAACAAGAAAGGGT
                      ____________________________________________________________
consensus             GTATAAGAGAACTGTGGATCATAGTTTTGGTTATGACCACTACTTGAAACAAGAAAGGGT
 
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rJMSF011I11+          GTCAAAAATTTCTACTTTTTTGCCATTATAGTAAATTGCATTGAAGAACGATGTGAGCTG
                      ____________________________________________________________
consensus             GTCAAAAATTTCTACTTTTTTGCCATTATAGTAAATTGCATTGAAGAACGATGTGAGCTG