Contig 013906:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011A14Sequence287000697 (2)775013906 (3)ref|XP_009611158.1|170PREDICTED: uncharacterized protein LOC104104720 [Nicotiana tomentosiformis]
JMSF017C02Sequence390000697 (2)673013906 (3)ref|XP_009783639.1|147PREDICTED: uncharacterized protein LOC104232197 [Nicotiana sylvestris] ref|XP_00
JMSF036M10Sequence671022185762013906 (3)ref|XP_006350055.1|108PREDICTED: uncharacterized protein LOC102580515 [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF036M10+                     TAAAGAGATCTGGTCGTTTGCTTTCCTACAGTAGTTGCAAAACTATGGA
                      ____________________________________________________________
consensus                        TAAAGAGATCTGGTCGTTTGCTTTCCTACAGTAGTTGCAAAACTATGGA
 
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rJMSF036M10+          AGCTAATATACTGTTGCTGCAAGAAGCTGGTTTTTCAGATGATAAAATCCAACAGTTTGT
                      ____________________________________________________________
consensus             AGCTAATATACTGTTGCTGCAAGAAGCTGGTTTTTCAGATGATAAAATCCAACAGTTTGT
 
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rJMSF036M10+          CATGGCAAGGCCACGTTATATAACAAATAAGCCTACTTGGATTGGCAATATTTTGAAAAG
rJMSF011A14+                                              TTGGATTGACAAGATTCTGAATAG
                      ____________________________________________________________
consensus             CATGGCAAGGCCACGTTATATAACAAATAAGCCTACTTGGATTGGCAATATTTTGAATAG
 
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rJMSF036M10+          AGTGGAAATGGAGTTTGGGATTTCTCGAAACTCCCCAATGTTTTACTGCGGATTACTTGT
rJMSF017C02+                                                     TACAGTGGAGTGTTTGT
rJMSF011A14+          AGTGGAAAAGGAGTTTGGGATTCCTCGAGGCTCCCCAATGTTTTACAGTGGAGTGTTTGT
                      ____________________________________________________________
consensus             AGTGGAAATGGAGTTTGGGATTTCTCGAGGCTCCCCAATGTTTTACAGTGGAGTGTTTGT
 
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rJMSF036M10+          TGCAACTGCACTGAATAAGTCAACAGTGGACAAGAAACTTGAAATTTTCAGGAGCTATGG
rJMSF017C02+          CGCGACTGCGCTGAGTACAGCAACTGTGGACAGGAAACTTGAAATCTTGAGGAGCTTTGG
rJMSF011A14+          CGCGACTGCGCTGAGTACAGCAACTGTGGACAGGAAACTTGAAATCTTGAGGAGCTTTGG
                      ____________________________________________________________
consensus             CGCGACTGCGCTGAGTACAGCAACTGTGGACAGGAAACTTGAAATCTTGAGGAGCTTTGG
 
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rJMSF036M10+          GTGGTCTAATTCAGAAATTTCTACCATGGTGC--AAACTACCCCATTCTTTAACTCTATC
rJMSF017C02+          GTGGTCGAATTCAGAAATTTCTACCATGGTGCAAAAACAACCTCATTCTTTAACTGTATC
rJMSF011A14+          GTGGTCGAATTCAGAAATTTCTACCATGGTGCAAAAACAACCTCATTCTTTAACTGTATC
                      ____________________________________________________________
consensus             GTGGTCGAATTCAGAAATTTCTACCATGGTGCAAAAACAACCTCATTCTTTAACTGTATC
 
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rJMSF036M10+          AGAGGCTAGGTTGAAAAAGGTACTGAATTTTTTTATGAAGGAACTTGGGTATGAATCCTA
rJMSF017C02+          AGAGGATAGGTTGAAAAGGGTACTGAATTTTTTAATGAAGGAACTCGGCTATAGCTCCCA
rJMSF011A14+          AGAGGATAAGTTGAAAAGGGTACTGAATTTTTTAATGAAGGAACTCGGCTATAGCTCCCA
                      ____________________________________________________________
consensus             AGAGGATAGGTTGAAAAGGGTACTGAATTTTTTAATGAAGGAACTCGGCTATAGCTCCCA
 
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rJMSF036M10+          TTACCTGGCTTTTCGGCCTATCATTCTAACATATAGTTTGGAGAAGAAGAGCATCCCTAG
rJMSF017C02+          TTACTTGGCTTTTCGCCCCATGTTTCTAATGTCTAGTTTGGAGAAGAAGACCATCCCTAG
rJMSF011A14+          TTACTTGGCTTTTCGCCCCATGTTTCTAATGTCTAGTTTGGAGAAGAAGACCATCCCTAG
                      ____________________________________________________________
consensus             TTACTTGGCTTTTCGCCCCATGTTTCTAATGTCTAGTTTGGAGAAGAAGACCATCCCTAG
 
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rJMSF036M10+          GAGTCAAGTGTTGAAAACTCTTGAAGAAAATAAGCTGAGAGCGTGCTCTCTCTTTAC   
rJMSF017C02+          GAGTCAAGTGTTGAAGATTCTTAAAGACAATCACCTGAGAGCATGCTCACTCTTTACCGC
rJMSF011A14+          GAGTCAAGTGTTGAAGATTCTTAAAGACAATCACCTGAGAGCATGCTCACTCTTTACCGC
                      ____________________________________________________________
consensus             GAGTCAAGTGTTGAAGATTCTTAAAGACAATCACCTGAGAGCATGCTCACTCTTTACCGC
 
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rJMSF017C02+          AATATCATTGACTGAATCAAAGTTTTCTAAAGATTATCTGCTACCCTACAAGGATAAGCT
rJMSF011A14+          AATATCATTGACTGAATCAAAGTTTTCTAAAGATTATCTGCTACCCTACAAGGATAAGCT
                      ____________________________________________________________
consensus             AATATCATTGACTGAATCAAAGTTTTCTAAAGATTATCTGCTACCCTACAAGGATAAGCT
 
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rJMSF017C02+          GCCTGAAATGTATCAAAGATACATAACAATTATGGAGATGTAGAACATGCAGTCATTTGT
rJMSF011A14+          GCCTGAAATGTATCAAAGATACATAACAAGTATGGAGATGTAGAACATGCAGTCATTTGT
                      ____________________________________________________________
consensus             GCCTGAAATGTATCAAAGATACATAACAATTATGGAGATGTAGAACATGCAGTCATTTGT
 
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rJMSF017C02+          TCATCAATGCTATCCTCTTCTTTCCATATTAATACTGTAGTTGTTCTAAGTTTTGTGGGG
rJMSF011A14+          TCATCAATGCTATCCTCTTCTTTCCATATTAATACTGTAGTTGTTCTAAGTTTTGTGGGG
                      ____________________________________________________________
consensus             TCATCAATGCTATCCTCTTCTTTCCATATTAATACTGTAGTTGTTCTAAGTTTTGTGGGG
 
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rJMSF017C02+          ATTGATTGGATTTGCTGAAATGCTCTTCATAATTGATGAATCATGAAAGATGTGCAGAGA
rJMSF011A14+          ATTGATTGGATTTGCTGAAATGCTCTTCATAATTGATGAATCATGAAAGATGTGCAGAGA
                      ____________________________________________________________
consensus             ATTGATTGGATTTGCTGAAATGCTCTTCATAATTGATGAATCATGAAAGATGTGCAGAGA
 
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rJMSF017C02+          TTCCGTTCTTTCTTTAATTCAAGGCATAAAGCAGGGACAGTGTTGATACAATCTGATCAT
rJMSF011A14+          TTCCGTTCTTTCTTTAATTCAAGGCATAAAGCAGGGACAGTGTTGATACAATCTGATCAT
                      ____________________________________________________________
consensus             TTCCGTTCTTTCTTTAATTCAAGGCATAAAGCAGGGACAGTGTTGATACAATCTGATCAT
 
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rJMSF017C02+          TAGTTGGACTTGGCCTGCAGTATGGTCATTATATATTGTACTTTAAGTTCAT        
rJMSF011A14+          TAGTTGGACTTGGCCTGCAGTATGGTCATTATATATTGTACTTTAAGTTCATTGTTGATT
                      ____________________________________________________________
consensus             TAGTTGGACTTGGCCTGCAGTATGGTCATTATATATTGTACTTTAAGTTCATTGTTGATT