Contig 013902:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF025D05+                                                    TCAGGCTTAATGGCTTTC
                      ____________________________________________________________
consensus                                                       TCAGGCTTAATGGCTTTC
 
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rJMSF025D05+          AGTTTTCATGATACAACAGATGACACCACTTCTCAAGATATGTCAGCTCCAGCTTCTCAA
rJMSF010A12+                                                                  TCAA
                      ____________________________________________________________
consensus             AGTTTTCATGATACAACAGATGACACCACTTCTCAAGATATGTCAGCTCCAGCTTCTCAA
 
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rJMSF025D05+          GATATATCACTTCCAGCATCCCAAGAAATGTGGAATGTTTACAACATTTAACTTGCTTGT
rJMSF010A12+          GATATATCACTTCCAGCATCCCAAGAAATGTGGAATGTTTACAACATTTAACTTGCTTGT
                      ____________________________________________________________
consensus             GATATATCACTTCCAGCATCCCAAGAAATGTGGAATGTTTACAACATTTAACTTGCTTGT
 
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rJMSF025D05+          TTGCATCTGGTTGACTTGGCAGGAAGTGAAAGAGCTGACAAAACTGAAGCAATTGGTGAT
rJMSF010A12+          TTGCATCTGGTTGACTTGGCAGGAAGTGAAAGAGCTGACAAAACTGAAGCAATTGGTGAT
                      ____________________________________________________________
consensus             TTGCATCTGGTTGACTTGGCAGGAAGTGAAAGAGCTGACAAAACTGAAGCAATTGGTGAT
 
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rJMSF025D05+          AGGTTAATGGAGGCTTAACATATCAACAAGTCTCTCTCTGCTTTAGGAGATGTGATATCT
rJMSF010A12+          AGGTTAATGGAGGCTTAACATATCAACAAGTCTCTCTCTGCTTTAGGAGATGTGATATCT
                      ____________________________________________________________
consensus             AGGTTAATGGAGGCTTAACATATCAACAAGTCTCTCTCTGCTTTAGGAGATGTGATATCT
 
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rJMSF025D05+          GCCCTTGGCAATAAGAGTTCACACGTTCCCTACAGGAATAGTAAGCTTACACAGCTCCTG
rJMSF010A12+          GCCCTTGGCAATAAGAGTTCACACGTTCCCTACAGGAATAGTAAGCTTACACAGCTCCTG
                      ____________________________________________________________
consensus             GCCCTTGGCAATAAGAGTTCACACGTTCCCTACAGGAATAGTAAGCTTACACAGCTCCTG
 
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rJMSF025D05+          CAAGATTCTCTTGGAAGGCAAGCCAAGATATTAATGTTTGTTCACATTAGTCCTGAGGCG
rJMSF010A12+          CAAGATTCTCTTGGAAGGCAAGCCAAGATATTAATGTTTGTTCACATTAGTCCTGAGGCG
                      ____________________________________________________________
consensus             CAAGATTCTCTTGGAAGGCAAGCCAAGATATTAATGTTTGTTCACATTAGTCCTGAGGCG
 
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rJMSF025D05+          GATGCTATTGGAGAGACACTTATGACTCTTAAATTTGCTGAACGTGTGTCTGTTGTCGAG
rJMSF010A12+          GATGCTATTGGAGAGACACTTATGACTCTTAAATTTGCTGAACGTGTGTCTGTTGTCGAG
                      ____________________________________________________________
consensus             GATGCTATTGGAGAGACACTTATGACTCTTAAATTTGCTGAACGTGTGTCTGTTGTCGAG
 
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rJMSF025D05+          CTTGGTGTAGCCCGTGCAAACAAAGATATATCTGATGTTAAAGAACTCAAAGAACAGATT
rJMSF010A12+          CTTGGTGTAGCCCGTGCAAACAAAGATATATCTGATGTTAAAGAACTCAAAGAACAGATT
                      ____________________________________________________________
consensus             CTTGGTGTAGCCCGTGCAAACAAAGATATATCTGATGTTAAAGAACTCAAAGAACAGATT
 
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rJMSF025D05+          GCTAGTCTAAAGGCTGCTTTGGCAAAGAAGGAGGGGGCAAATTCCAGATCAAGTAGTCCA
rJMSF010A12+          GCTAGTCTAAAGGCTGCTTTGGCAAAGAAGGAGGGGGCAAATTCCAGATCAAGTAGTCCA
                      ____________________________________________________________
consensus             GCTAGTCTAAAGGCTGCTTTGGCAAAGAAGGAGGGGGCAAATTCCAGATCAAGTAGTCCA
 
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rJMSF025D05+          GAAAGGAGAATTCCATCCTATGGATCTTCACCTTCACATTCAAGTTGAGGGGATATGCAA
rJMSF010A12+          GAAAGGAGAATTCCATCCTATGGATCTTCACCTTCACATTCAAGTTGAGGGGATATGCAA
                      ____________________________________________________________
consensus             GAAAGGAGAATTCCATCCTATGGATCTTCACCTTCACATTCAAGTTGAGGGGATATGCAA
 
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rJMSF025D05+          ATCTATGATCAAGGGCAACCTTACGGAGGATGTTGGTGGCGGAAGAGCGGGTACTTCATC
rJMSF010A12+          ATCTATGATCAAGGGCAACCTTACGGAGGATGTTGGTGGCGGAAGAGCGGGTACTTCATC
                      ____________________________________________________________
consensus             ATCTATGATCAAGGGCAACCTTACGGAGGATGTTGGTGGCGGAAGAGCGGGTACTTCATC
 
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rJMSF025D05+          ATCACCTCCATCTCAGAACAATTGAATCTAATGGTTGTTTGTGAAGACTATTACAATGTT
rJMSF010A12+          ATCACCTCCATCTCAGAACAATTGAATCTAATGGTTGTTTGTGAAGACTATTACAATGTT
                      ____________________________________________________________
consensus             ATCACCTCCATCTCAGAACAATTGAATCTAATGGTTGTTTGTGAAGACTATTACAATGTT
 
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rJMSF025D05+          TAGACTTGGATAGACTATTATTATGTATATATTAAATGTGGATTAGTAATGTAT      
rJMSF010A12+          TAGACTTGGATAGACTATTATTATGTATATATTAAATGTGGATTAGTAATGTATTATTAC
                      ____________________________________________________________
consensus             TAGACTTGGATAGACTATTATTATGTATATATTAAATGTGGATTAGTAATGTATTATTAC