Contig 013896:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF009A20Sequence282009400 (2)ref|XP_006350216.1|8e-10PREDICTED: translation factor GUF1 homolog, chloroplastic-like [Solanum tuberos816013896 (2)dbj|BAJ33885.1|1e-115unnamed protein product [Thellungiella halophila]
JMSF029P03Sequence607009400 (2)ref|XP_009605439.1|3e-81PREDICTED: translation factor GUF1 homolog, chloroplastic {ECO:0000255|HAMAP-Rul709013896 (2)ref|XP_008393921.1|2e-91PREDICTED: translation factor GUF1 homolog, chloroplastic [Malus domestica]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009A20+                                  AAGAAAGTCCATTGNGGNACCATATGTCAAGATTGA
                      ____________________________________________________________
consensus                                     AAGAAAGTCCATTGNGGNACCATATGTCAAGATTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009A20+          GATGCTCACTCCAAAAGAATACATTGGTGCACTAATGGAGCTTGCTCAAGACAGAAGAGG
                      ____________________________________________________________
consensus             GATGCTCACTCCAAAAGAATACATTGGTGCACTAATGGAGCTTGCTCAAGACAGAAGAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029P03+                CAAAGAAATGAAATTTATTGCTGAAAATAGAGCTTCAATTATATATGAATTGCC
rJMSF009A20+          AGAGTTCAAAGAAATGAAATTTATTGCTGAAAATAGAGCTTCAATTATATATGAATTGCC
                      ____________________________________________________________
consensus             AGAGTTCAAAGAAATGAAATTTATTGCTGAAAATAGAGCTTCAATTATATATGAATTGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029P03+          ACCTGCTGAGATGGTTGGTGATTTCTTTGATCAACTGAAATCAAGAAGCAAAGGTTATGC
rJMSF009A20+          ACTTGCTGAGATGGTTGGTGATTTCTTTGATCAACTGAAATCAAGAAGCAAAGGTTATGC
                      ____________________________________________________________
consensus             ACTTGCTGAGATGGTTGGTGATTTCTTTGATCAACTGAAATCAAGAAGCAAAGGTTATGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029P03+          TAGCATGGAGTACAATTTTATTGGATACAAAGAAAGTGATTTGATAAAGCTTGATATTCT
rJMSF009A20+          TAGCATGGAGTACAATTTTATTGGATACAAAGAAAGTGATTTGATAAAGCTTGATATTCT
                      ____________________________________________________________
consensus             TAGCATGGAGTACAATTTTATTGGATACAAAGAAAGTGATTTGATAAAGCTTGATATTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029P03+          TATTAATGGTGACCCTGTGGAACCTTTGTCAACTATTGTGCACAAGGACAAGGCATATGG
rJMSF009A20+          TATTAATGGTGACCCTGTGGAACCTTTGTCAACTATTGTGCACAAGGACAAGGCATATGG
                      ____________________________________________________________
consensus             TATTAATGGTGACCCTGTGGAACCTTTGTCAACTATTGTGCACAAGGACAAGGCATATGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029P03+          AGTGGGAAGGGCCTTGACTCAAAAGCTGAAAGAACTAATACCTAGACAAATGTTTAAAGT
rJMSF009A20+          AGTGGGAAGGGCCTTGACTCAAAAGCTGAAAGAACTAATACCTAGACAAATGTTTAAAGT
                      ____________________________________________________________
consensus             AGTGGGAAGGGCCTTGACTCAAAAGCTGAAAGAACTAATACCTAGACAAATGTTTAAAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029P03+          TCCAATCCAGGCATGCATAGGCTCCAAAGTCATTGCCAGTGAGGCTTTGTCTGCTATCAG
rJMSF009A20+          TCCAATCCAGGCATGCATAGGCTCCAAAGTCATTGCCAGTGAGGCTTTGTCTGCTATCAG
                      ____________________________________________________________
consensus             TCCAATCCAGGCATGCATAGGCTCCAAAGTCATTGCCAGTGAGGCTTTGTCTGCTATCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029P03+          GAAGGATGTTCTTGCCAAGTGCTATGGTGGTGACATTTCAAGAAAAAAGAAGTTGCTTAA
rJMSF009A20+          GAAGGATGTTCTTGCCAAGTGCTATGGTGGTGACATTTCAAGAAAAAAGAAGTTGCTTAA
                      ____________________________________________________________
consensus             GAAGGATGTTCTTGCCAAGTGCTATGGTGGTGACATTTCAAGAAAAAAGAAGTTGCTTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029P03+          GAAACAGGCCGAGGGGAAGAAAAGAATGAAGTCAATTGGTAAAGTTGATGTACCTCAGGA
rJMSF009A20+          GAAACAGGCCGAGGGGAAGAAAAGAATGAAGTCAATTGGTAAAGTTGATGTACCTCAGGA
                      ____________________________________________________________
consensus             GAAACAGGCCGAGGGGAAGAAAAGAATGAAGTCAATTGGTAAAGTTGATGTACCTCAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029P03+          AGCATTTATGGCAGTTCTCAAACTTGAGAAAGAGGTCCTATGATTGCATCAGTGCAGCGG
rJMSF009A20+          AGCATTTATGGCAGTTCTCAAACTTGAGAAAGAGGTCCTATGATTGCATCAGTGCAGCGG
                      ____________________________________________________________
consensus             AGCATTTATGGCAGTTCTCAAACTTGAGAAAGAGGTCCTATGATTGCATCAGTGCAGCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029P03+          AGGGCGATGTAGAATCAGTGCCCATCTTCTTGTAAAATTCTTTTTTCTTCATATTTTTTC
rJMSF009A20+          AGGGCGATGTAGAATCAGTGCCCATCTTCTTGTAAAATTCTTTTTTCTTCATATTTTTTC
                      ____________________________________________________________
consensus             AGGGCGATGTAGAATCAGTGCCCATCTTCTTGTAAAATTCTTTTTTCTTCATATTTTTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029P03+          GACACAACCAAATTGTAAAAGGCATCAGATATCTTCTTGGTGATCAAGCAAAGATTCATG
rJMSF009A20+          GACACAACCAAATTGTAAAAGGCATCAGATATCTTCTTGGTGATCAAGCAAAGATTCATG
                      ____________________________________________________________
consensus             GACACAACCAAATTGTAAAAGGCATCAGATATCTTCTTGGTGATCAAGCAAAGATTCATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029P03+          TACATCATATGGCAGGCTTCATGGATTGGAAATTTGATGTAAATACAAACAGCAT     
rJMSF009A20+          TACATCATATGGCAGGCTTCATGGATTGGAAATTTGATGTAAATACAAACAGCATTTTGA
                      ____________________________________________________________
consensus             TACATCATATGGCAGGCTTCATGGATTGGAAATTTGATGTAAATACAAACAGCATTTTGA