Contig 013889:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007A22Sequence292007865 (4)ref|XP_011085741.1|1e-41PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Sesamum indic725013889 (5)ref|XP_009592903.1|9e-78PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Nicotiana tom
JMSF007M02Sequence380007865 (4)ref|XP_009774058.1|6e-24PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Nicotiana syl685013889 (5)ref|XP_009592903.1|2e-43PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Nicotiana tom
JMSF020F21Sequence621007865 (4)ref|XP_009774058.1|2e-57PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Nicotiana syl780013889 (5)ref|XP_009592903.1|4e-61PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Nicotiana tom
JMSF021A22Sequence620007865 (4)ref|XP_011085741.1|3e-71PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Sesamum indic725013889 (5)ref|XP_009592903.1|9e-78PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Nicotiana tom
JMSF043D22Sequence728013889 (5)ref|XP_009592903.1|1e-63PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Nicotiana tom

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF007A22+ ATGCCGGTGTTGGTAACAAGGAGGAGGTATTCCGGATATG
rJMSF021A22+ TGCCGGTGTTGGTAACAAGGAGGAGGTATTCCGGATATG
                      ____________________________________________________________
consensus ATGCCGGTGTTGGTAACAAGGAGGAGGTATTCCGGATATG
 
. : . : . : . : . : . :
rJMSF007A22+ GAATGTCTACAAGTCGAATTTCCCCTTCATTCCAAACTCGAGCTACCATTCAATAATCGC
rJMSF021A22+ GAATGTCTACAAGTCGAATTTCCCCTTCATTCCAAACTCGAGCTACCATTCAATAATCGC
rJMSF043D22+ ATCGC
rJMSF020F21+ ATCGC
                      ____________________________________________________________
consensus GAATGTCTACAAGTCGAATTTCCCCTTCATTCCAAACTCGAGCTACCATTCAATAATCGC
 
. : . : . : . : . : . :
rJMSF007A22+ GTCTTTGCTGAGATTGGACGATGTTGAAGATGCGGAGAACATATTCGACGAATGGTTGTC
rJMSF021A22+ GTCTTTGCTGAGATTGGACGATGTTGAAGATGCGGAGAACATATTCGACGAATGGTTGTC
rJMSF043D22+ GTCTTTGCTGAGATTGGACGATGTTGAAGATGCGGAGAACATATTCGACGAATGGTTGTC
rJMSF020F21+ GTCTTTGCTGAGATTGGACGATGTTGAAGATGCGGAGAACATATTCGACGAATGGTTGTC
                      ____________________________________________________________
consensus GTCTTTGCTGAGATTGGACGATGTTGAAGATGCGGAGAACATATTCGACGAATGGTTGTC
 
. : . : . : . : . : . :
rJMSF007A22+ AGCAAAGTCGAGATATGATCCCCGAGTGGCGAATCTTCTGCTGGTTTGCTATGTGAGGAA
rJMSF021A22+ AGCAAAGTCGAGATATGATCCCCGAGTGGCGAATCTTCTGCTGGTTTGCTATGTGAGGAA
rJMSF043D22+ AGCAAAGTCGAGATATGATCCCCGAGTGGCGAATCTTCTGCTGGTTTGCTATGTGAGGAA
rJMSF020F21+ AGCAAAGTCGAGATATGATCCCCGAGTGGCGAATCTTCTGCTGGTTTGCTATGTGAGGAA
rJMSF007M02+ TTCTGCTGGTTTGCTATGTGAGGAA
                      ____________________________________________________________
consensus AGCAAAGTCGAGATATGATCCCCGAGTGGCGAATCTTCTGCTGGTTTGCTATGTGAGGAA
 
. : . : . : . : . : . :
rJMSF007A22+ GGGGCAATTCGAGAGGGCCGAAGGGTTCTTAGCCCAAATAATAGACGCCGGGGTAAAGCC
rJMSF021A22+ GGGGCAATTCGAGAGGGCCGAAGGGTTCTTAGCCCAAATAATAGACGCCGGGGTAAAGCC
rJMSF043D22+ GGGGCAATTCGAGAGGGCCGAAGGGTTCTTAGCCCAAATAATAGACGCCGGGGTAAAGCC
rJMSF020F21+ GGGGCAATTCGAGAGGGCCGAAGGGTTCTTAGCCCAAATAATAGACGCCGGGGTAAAGCC
rJMSF007M02+ GGGGCAATTCGAGAGGGCCGAAGGGTTCTTAGCCCAAATAATAGACGCCGGGGTAAAGCC
                      ____________________________________________________________
consensus GGGGCAATTCGAGAGGGCCGAAGGGTTCTTAGCCCAAATAATAGACGCCGGGGTAAAGCC
 
. : . : . : . : . : . :
rJMSF007A22+ GAACCCGAAGACATGGGAGATTCTCGCCGATGGGCATATCAAAGAGCGGAGAATCTCCGA
rJMSF021A22+ GAACCCGAAGACATGGGAGATTCTCGCCGATGGGCATATCAAAGAGCGGAGAATCTCCGA
rJMSF043D22+ GAACCCGAAGACATGGGAGATTCTCGCCGATGGGCATATCAAAGAGCGGAGAATCTCCGA
rJMSF020F21+ GAACCCGAAGACATGGGAGATTCTCGCCGATGGGCATATCAAAGAGCGGAGAATCTCCGA
rJMSF007M02+ GAACCCGAAGACATGGGAGATTCTCGCCGATGGGCATATCAAAGAGCGGAGAATCTCCGA
                      ____________________________________________________________
consensus GAACCCGAAGACATGGGAGATTCTCGCCGATGGGCATATCAAAGAGCGGAGAATCTCCGA
 
. : . : . : . : . : . :
rJMSF007A22+ GGCTTTATCCTGCTTGAAGGAGGCCGGTTCAGCCGAGGGATCTAAAAACTGGAGACCATG
rJMSF021A22+ GGCTTTATCCTGCTTGAAGGAGGCCGGTTCAGCCGAGGGATCTAAAAACTGGAGACCATG
rJMSF043D22+ GGCTTTATCCTGCTTGAAGGAGGCCGGTTCAGCCGAGGGATCTAAAAACTGGAGACCATG
rJMSF020F21+ GGCTTTATCCTGCTTGAAGGAGGCCGGTTCAGCCGAGGGATCTAAAAACTGGAGACCATG
rJMSF007M02+ GGCTTTATCCTGCTTGAAGGAGGCCGGTTCAGCCGAGGGATCTAAAAACTGGAGACCATG
                      ____________________________________________________________
consensus GGCTTTATCCTGCTTGAAGGAGGCCGGTTCAGCCGAGGGATCTAAAAACTGGAGACCATG
 
. : . : . : . : . : . :
rJMSF007A22+ GCCCGCAACTATATCGTCTTTTTTCAAGCTTTGTGAGGTAGAAGACGATACGGAAAGCAA
rJMSF021A22+ GCCCGCAACTATATCGTCTTTTTTCAAGCTTTGTGAGGTAGAAGACGATACGGAAAGCAA
rJMSF043D22+ GCCCGCAACTATATCGTCTTTTTTCAAGCTTTGTGAGGTAGAAGACGATACGGAAAGCAA
rJMSF020F21+ GCCCGCAACTATATCGTCTTTTTTCAAGCTTTGTGAGGTAGAAGACGATACGGAAAGCAA
rJMSF007M02+ GCCCGCAACTATATCGTCTTTTTTCAAGCTTTGTGAGGTAGAAGACGATACGGAAAGCAA
                      ____________________________________________________________
consensus GCCCGCAACTATATCGTCTTTTTTCAAGCTTTGTGAGGTAGAAGACGATACGGAAAGCAA
 
. : . : . : . : . : . :
rJMSF007A22+ GGAGCTACTGATCGAGGTGTTGAAGCAAGCCGGGTGTCTTCATCCCGAGGACTATGTGTC
rJMSF021A22+ GGAGCTACTGATCGAGGTGTTGAAGCAAGCCGGGTGTCTTCATCCCGAGGACTATGTGTC
rJMSF043D22+ GGAGCTACTGATCGAGGTGTTGAAGCAAGCCGGGTGTCTTCATCCCGAGGACTATGTGTC
rJMSF020F21+ GGAGCTACTGATCGAGGTGTTGAAGCAAGCCGGGTGTCTTCATCCCGAGGACTATGTGTC
rJMSF007M02+ GGAGCTACTGATCGAGGTGTTGAAGCAAGCCGGGTGTCTTCATCCCGAGGACTATGTGTC
                      ____________________________________________________________
consensus GGAGCTACTGATCGAGGTGTTGAAGCAAGCCGGGTGTCTTCATCCCGAGGACTATGTGTC
 
. : . : . : . : . : . :
rJMSF007A22+ TCAAATCCCGACACCCAATGGCTCGAATACTAACAACGAACCCGACACATGGGAGGAAGA
rJMSF021A22+ TCAAATCCCGACACCCAATGGCTCGAATACTAACAACGAACCCGACACATGGGAGGAAGA
rJMSF043D22+ TCAAATCCCGACACCCAATGGCTCGAATACTAACAACGAACCCGACACATGGGAGGAAGA
rJMSF020F21+ TCAAATCCCGACACCCAATGGCTCGAATACTAACAACGAACCCGACACATGGGAGGAAGA
rJMSF007M02+ TCAAATCCCGACACCCAATGGCTCGAATACTAACAACGAACCCGACACATGGGAGGAAGA
                      ____________________________________________________________
consensus TCAAATCCCGACACCCAATGGCTCGAATACTAACAACGAACCCGACACATGGGAGGAAGA
 
. : . : . : . : . : . :
rJMSF007A22+ CTCATTCCTGGATAACAACGACGATAAAAGTGGTGACCTCCTTCTCAGTGAACTACACGG
rJMSF021A22+ CTCATTCCTGGATAACAACGACGATAAAAGTGGTGACCTCCTTCTCAGTGAACTACACGG
rJMSF043D22+ CTCATTCCTGGATAACAACGACGATAAAAGTGGTGACCTCCTTCTCAGTGAACTACACGG
rJMSF020F21+ CTCATTCCTGGATAACAACGACGATAAAAGTGGTGACCTCCTTCTCAGTGAACTACACGG
rJMSF007M02+ CTCATTCCTGGATAACAACGACGATAAAAGTGGTGACCTCCTTCTCAGTGAACTACACGG
                      ____________________________________________________________
consensus CTCATTCCTGGATAACAACGACGATAAAAGTGGTGACCTCCTTCTCAGTGAACTACACGG
 
. : . : . : . : . : . :
rJMSF007A22+ GAGCTTATGATAACTTCTTTCGCTTATCCTAACGTGATAGATCGCGGGCACTATTAAGAA
rJMSF021A22+ GAGCTTATGATAACTTCTTTCGCTTATCCTAACGTGATAGATCGCGGGCACTATTAAGAA
rJMSF043D22+ GAGCTTATGATAACTTCTTTCGCTTATCCTAACGTGATAGATCGCGGGCACTATTAAGAA
rJMSF020F21+ GAGCTTATGATAACTTCTTTCGCTTATCCTAACGTGATATATCGCGGGCACTATTAAGAA
rJMSF007M02+ GAGCTTATGATAACTTCTTTCGCTTATCCTAACGTGATAGATCGCGGGCACTATTAAGAA
                      ____________________________________________________________
consensus GAGCTTATGATAACTTCTTTCGCTTATCCTAACGTGATAGATCGCGGGCACTATTAAGAA
 
. : . : . : . : . : . :
rJMSF007A22+ ATGTAGATTCTTT
rJMSF021A22+ ATGTAGATTCTTT
rJMSF043D22+ ATGTAGATTCTTTTACAGTCAGAAAATTTTCATTTAAGTTTATATCAATGGTTTCTGCAT
rJMSF020F21+ ATGTAGATTCTTTTACAGTCAGAAAATTTTCATTTAAGTTTATATCAATGGTTTCTGCAT
rJMSF007M02+ ATGTAGATTCTTTTACAGTCAGAAAATTTTCATTTAAGTTTATATCAATGGTTTCTGCAT
                      ____________________________________________________________
consensus ATGTAGATTCTTTTACAGTCAGAAAATTTTCATTTAAGTTTATATCAATGGTTTCTGCAT
 
. : . : . : . : . : . :
rJMSF043D22+ CTTTTTAGTTCATGGATAAGCATTAGGGGCTTCATTACCCT
rJMSF020F21+ CTTTTTAGTTCATGGATAAGCATTAGGGGCTTCATTACCCTTGGAAGCATAATGTACCAG
rJMSF007M02+ CTTTTTAGTTCATGGATAAGCATTAGGGGCTTCATTACCCTTGGAAGCATAATGTACCAG
                      ____________________________________________________________
consensus CTTTTTAGTTCATGGATAAGCATTAGGGGCTTCATTACCCTTGGAAGCATAATGTACCAG
 
. : . : . : . : . : . :
rJMSF020F21+ GGGTCCCAAAATGGAAGCTAATGGTGATATTGATTGTAAATAAATATTG
rJMSF007M02+ GGGTCCCAAAATGGAAGCTAATGGTGATATTGATTGTAAATAAATATTGGTTCCCGTGAG
                      ____________________________________________________________
consensus GGGTCCCAAAATGGAAGCTAATGGTGATATTGATTGTAAATAAATATTGGTTCCCGTGAG